##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088216_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1717999 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.45221271956503 31.0 31.0 33.0 27.0 34.0 2 30.835197226540878 31.0 31.0 34.0 27.0 34.0 3 31.0006612343779 31.0 31.0 34.0 27.0 34.0 4 35.04468803532482 35.0 35.0 37.0 32.0 37.0 5 34.92148307420435 35.0 35.0 37.0 32.0 37.0 6 34.97479917043025 36.0 35.0 37.0 32.0 37.0 7 34.76650743102877 35.0 35.0 37.0 32.0 37.0 8 34.8996803839816 36.0 35.0 37.0 32.0 37.0 9 36.327537443269755 38.0 35.0 39.0 32.0 39.0 10 36.21614855421918 38.0 35.0 39.0 32.0 39.0 11 36.2624396172524 38.0 35.0 39.0 32.0 39.0 12 36.08553439204563 38.0 35.0 39.0 31.0 39.0 13 36.144744554566095 38.0 35.0 39.0 31.0 39.0 14 36.98300639290244 39.0 36.0 40.0 31.0 41.0 15 37.05183763203588 39.0 36.0 40.0 31.0 41.0 16 36.99580558545145 39.0 36.0 40.0 31.0 41.0 17 37.15372476933921 39.0 36.0 40.0 31.0 41.0 18 37.18780569720937 39.0 36.0 40.0 31.0 41.0 19 37.3136206714905 39.0 36.0 40.0 31.0 41.0 20 37.276777809533066 39.0 36.0 40.0 31.0 41.0 21 37.16726843263587 39.0 36.0 40.0 31.0 41.0 22 37.11952218831326 39.0 36.0 40.0 31.0 41.0 23 36.97034689775722 39.0 35.0 40.0 31.0 41.0 24 36.91304593308843 39.0 35.0 40.0 31.0 41.0 25 36.80039743911376 39.0 35.0 40.0 30.0 41.0 26 36.502560828033076 38.0 35.0 40.0 30.0 41.0 27 36.33030461600967 38.0 35.0 40.0 30.0 41.0 28 36.149225348792406 38.0 35.0 40.0 30.0 41.0 29 36.02022236334247 38.0 35.0 40.0 30.0 41.0 30 35.826475451964754 38.0 34.0 40.0 29.0 41.0 31 35.508000877765355 38.0 34.0 40.0 28.0 41.0 32 35.18723992272405 37.0 34.0 40.0 27.0 41.0 33 35.25582610932835 38.0 34.0 40.0 27.0 41.0 34 35.18308799946915 38.0 34.0 40.0 27.0 41.0 35 35.04327767361914 38.0 33.0 40.0 26.0 41.0 36 34.91238178834796 38.0 33.0 40.0 25.0 41.0 37 34.75373501381549 38.0 33.0 40.0 25.0 41.0 38 34.57379369836653 37.0 33.0 40.0 24.0 41.0 39 34.45113763162843 38.0 33.0 40.0 23.0 41.0 40 34.225253914583185 38.0 33.0 40.0 22.0 41.0 41 34.03930328248154 38.0 33.0 40.0 21.0 41.0 42 33.771344453634725 37.0 33.0 40.0 18.0 41.0 43 33.40844144845253 37.0 33.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 2.0 15 14.0 16 24.0 17 61.0 18 164.0 19 404.0 20 807.0 21 1660.0 22 2946.0 23 4917.0 24 8093.0 25 12430.0 26 18696.0 27 26886.0 28 36997.0 29 49517.0 30 62134.0 31 73973.0 32 89678.0 33 108080.0 34 128334.0 35 152870.0 36 186518.0 37 239686.0 38 272558.0 39 240549.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.16358565982867 24.47725522541049 14.56246482099233 20.796694293768507 2 17.458275586889165 23.495473513081205 36.78308311006002 22.26316778996961 3 20.63918547100435 26.360550850146012 32.75525771551672 20.245005963332925 4 12.852102940688557 15.573874024373705 34.6574124897628 36.91661054517494 5 10.42387102670025 41.82854588390331 34.1153865630888 13.632196526307641 6 31.327899492374563 35.31748272263255 15.162348755732689 18.192269029260203 7 23.2345886115184 36.840882910874804 21.037788729795533 18.886739747811262 8 28.21159965750853 33.38709743137219 20.15140870279901 18.24989420832026 9 24.900945809630855 13.576201150291705 25.21014273000159 36.31271031007585 10 16.75414246457652 28.086512273872106 33.071672335082845 22.087672926468525 11 30.108632193615946 21.6364503122528 26.025800946333494 22.22911654779776 12 20.037497111465143 27.982437708054547 32.221031560553875 19.759033619926438 13 31.571264011213046 20.929523241864516 30.17731675047541 17.32189599644703 14 20.506531144663064 23.020851583732004 29.680576065527397 26.79204120607754 15 22.655542872842187 28.873066864416103 28.64623320502515 19.825157057716563 16 20.91083871410868 28.66555801254832 28.348561320466427 22.075041952876575 17 18.0868556966564 27.091808551692985 28.865732750717548 25.955603000933063 18 19.409906524974694 26.398327356418715 34.61922853272906 19.572537585877523 19 18.420383248185825 24.368349457712142 36.41404913506934 20.79721815903269 20 24.220910489470597 22.990059947648398 34.799787427117245 17.989242135763757 21 23.348907653613303 24.164216626435756 33.03453610857748 19.452339611373464 22 20.95455236004212 23.78796495224968 34.17696983525602 21.080512852452184 23 19.660896193769613 26.56980591956107 35.61742469000273 18.15187319666659 24 18.053095490742425 25.297453607365313 33.62539791932358 23.024052982568673 25 19.487613205828406 26.646697698892723 35.05071888866059 18.81497020661828 26 21.562410688248363 24.988314894246155 33.211311531613234 20.237962885892248 27 19.725389828515617 27.036977320708566 32.734826970213604 20.50280588056221 28 19.332141636869405 26.37452059052421 32.93692254768484 21.35641522492155 29 18.100185157267262 26.180224784764132 34.256422733657004 21.4631673243116 30 17.380394284280722 26.274636946820106 36.90520192386607 19.439766845033088 31 19.151175291720193 25.705893891672808 35.187680551618485 19.955250264988514 32 20.74430776735027 26.138490185384278 32.50351135245131 20.613690694814142 33 21.970559936297985 26.07550993917924 31.735699496914727 20.21823062760805 34 19.44779944575055 29.734767016744478 31.84827232146235 18.969161216042618 35 17.81659942758989 30.6298199242258 32.018470325070034 19.535110323114274 36 19.00391094523338 25.944252586875777 34.97504946161203 20.076787006278813 37 19.19366658537054 26.443845427151004 33.64466451959518 20.717823467883274 38 19.638020743900316 25.84099292258028 34.38197577530604 20.139010558213364 39 20.970442939722318 25.140002991852732 34.117598438648685 19.77195562977627 40 18.720034179298125 26.237442513063165 32.84914601230851 22.193377295330208 41 19.95350404744124 25.81596380440268 32.549087630435174 21.68144451772091 42 16.851057538450256 27.858339847694907 33.12941392864606 22.16118868520878 43 17.801581956683325 27.736221033888842 32.49908760133155 21.96310940809628 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 179.0 1 214.0 2 249.0 3 815.5 4 1382.0 5 1382.0 6 2515.0 7 3648.0 8 4150.5 9 4653.0 10 7374.0 11 10095.0 12 10095.0 13 18342.5 14 26590.0 15 43529.5 16 60469.0 17 58567.0 18 56665.0 19 56665.0 20 59052.5 21 61440.0 22 48177.0 23 34914.0 24 36967.0 25 39020.0 26 39020.0 27 41076.5 28 43133.0 29 43696.5 30 44260.0 31 46652.0 32 49044.0 33 49044.0 34 52584.0 35 56124.0 36 60628.5 37 65133.0 38 68199.0 39 71265.0 40 71265.0 41 75574.0 42 79883.0 43 95716.5 44 111550.0 45 150409.5 46 189269.0 47 189269.0 48 191164.0 49 193059.0 50 172071.5 51 151084.0 52 138249.5 53 125415.0 54 125415.0 55 105621.0 56 85827.0 57 67309.5 58 48792.0 59 41272.5 60 33753.0 61 33753.0 62 28602.0 63 23451.0 64 20114.0 65 16777.0 66 14084.5 67 11392.0 68 11392.0 69 9411.0 70 7430.0 71 6175.5 72 4921.0 73 4044.5 74 3168.0 75 3168.0 76 2515.0 77 1862.0 78 1444.5 79 1027.0 80 786.5 81 546.0 82 546.0 83 417.5 84 289.0 85 208.0 86 127.0 87 95.0 88 63.0 89 63.0 90 50.5 91 38.0 92 23.5 93 9.0 94 6.0 95 3.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1717999.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.63804966549199 #Duplication Level Percentage of deduplicated Percentage of total 1 76.28321388323236 31.000010344301447 2 12.739490269043177 10.354160765328572 3 4.505304298122672 5.492603394757911 4 1.9902838458969032 3.2352501511193905 5 1.0764367295956785 2.187214463953448 6 0.6695410643082534 1.6325305814667104 7 0.4434442649208276 1.2614497043211126 8 0.3198012983058554 1.0396880834913738 9 0.2276513345635426 0.8326175616367901 >10 1.4713556397055507 11.573002325110163 >50 0.1593906840954618 4.476068961057118 >100 0.0938854129402337 7.560227038460154 >500 0.008574642020859304 2.421715201274666 >1k 0.009737305345721585 7.510010281038045 >5k 0.0013079962404700636 3.8499743640984208 >10k+ 5.813316624311393E-4 5.573476778584747 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 28700 1.670548120225914 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 27547 1.6034351591589984 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 24076 1.4013977889393416 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 14046 0.817579055633909 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9915 0.5771248993742139 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8507 0.4951690891554652 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7775 0.452561381001968 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7613 0.4431318062466858 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7534 0.43853343337219636 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6410 0.3731084826009794 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5932 0.34528541634773946 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5846 0.3402795927122193 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5655 0.3291620076612385 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4666 0.2715950358527566 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4660 0.2712457923433017 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4145 0.24126905778175659 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3882 0.225960550617317 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3587 0.20878941140245133 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3396 0.1976718263514705 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3123 0.1817812466712728 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2976 0.17322478068962788 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2761 0.16071022160082746 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2733 0.15908041855670463 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2705 0.15745061551258177 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2679 0.15593722697161058 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2559 0.14895235678251267 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2274 0.13236329008340517 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2265 0.13183942481922284 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 2197 0.12788133171206734 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 2119 0.12334116608915373 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2096 0.12200239930290994 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2015 0.11728761192526886 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 1938 0.11280565355393105 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 1914 0.11140867951611147 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 1896 0.1103609489877468 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTC 1875 0.10913859670465466 No Hit CTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTAC 1874 0.10908038945307884 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 1866 0.10861473144047232 No Hit ATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAG 1809 0.10529691810065081 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACCTGTCTCT 1762 0.10256117727658748 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.820725157581582E-5 0.0 0.0 0.0 3 0.0 5.820725157581582E-5 0.0 0.0 0.0 4 0.0 5.820725157581582E-5 0.0 0.0 0.0 5 0.0 5.820725157581582E-5 0.0 0.0 0.0 6 1.1641450315163163E-4 5.820725157581582E-5 0.0 0.0 0.0 7 1.1641450315163163E-4 5.820725157581582E-5 0.0 0.0 0.0 8 1.1641450315163163E-4 5.820725157581582E-5 0.0 0.0 0.0 9 1.1641450315163163E-4 5.820725157581582E-5 0.0 1.7462175472744744E-4 0.0 10 1.1641450315163163E-4 5.820725157581582E-5 0.0 5.820725157581582E-4 0.0 11 1.1641450315163163E-4 5.820725157581582E-5 0.0 0.0011641450315163164 0.0 12 1.1641450315163163E-4 5.820725157581582E-5 0.0 0.001629803044122843 0.0 13 1.1641450315163163E-4 5.820725157581582E-5 0.0 0.001920839302001922 0.0 14 1.1641450315163163E-4 5.820725157581582E-5 0.0 0.002561119069335896 0.0 15 1.7462175472744744E-4 5.820725157581582E-5 0.0 0.0044237511197620025 0.0 16 1.7462175472744744E-4 5.820725157581582E-5 0.0 0.006810248434370451 0.0 17 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.01100117054782919 0.0 18 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.012572766340376216 0.0 19 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.014318983887650691 0.0 20 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.018160662491654534 0.0 21 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.024563460164994274 0.0 22 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.04004658908416128 0.0 23 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.0618161011735164 0.0 24 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.09144359222560665 0.0 25 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.10378352955967961 0.0 26 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.11752044093157214 0.0 27 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.20721781560990432 0.0 28 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.30232846468478736 0.0 29 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.4089641495716819 0.0 30 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.6447617257053119 0.0 31 1.7462175472744744E-4 1.1641450315163163E-4 0.0 0.9573928739190186 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6810 0.0 28.850222 1 GTATTGG 710 0.0 25.535212 1 ATTGGAC 725 0.0 25.006895 3 TCGACGG 50 2.7028576E-4 22.199999 19 TTGGACC 1265 0.0 21.205532 4 CGAATTA 115 1.3460522E-10 20.913042 15 TATTGGA 845 0.0 20.579884 2 CCCCCGT 65 6.904672E-5 19.923077 37 CGTTTAG 65 6.904672E-5 19.923077 26 CATTGCG 85 1.2460423E-6 19.588234 29 GGACCCT 1325 0.0 19.407547 6 CTGTGCG 115 3.0540832E-9 19.304346 9 TGGACCC 1350 0.0 18.637037 5 TAGGTCG 90 2.153478E-6 18.5 21 GACCGTC 60 9.239349E-4 18.5 22 CCGAATT 130 6.9667294E-10 18.5 14 TGAACGG 50 0.007036267 18.499998 25 CTCGACG 50 0.007036267 18.499998 18 TACGTCC 50 0.007036267 18.499998 6 TTTTTAC 1400 0.0 17.839287 1 >>END_MODULE