##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088215_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2394577 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.425881898974225 31.0 30.0 33.0 27.0 34.0 2 30.787177443030647 31.0 31.0 34.0 27.0 34.0 3 30.970997800446593 31.0 31.0 34.0 27.0 34.0 4 35.02070135978087 35.0 35.0 37.0 32.0 37.0 5 34.86136257050828 35.0 35.0 37.0 32.0 37.0 6 34.910974673188626 35.0 35.0 37.0 32.0 37.0 7 34.716952096341025 35.0 35.0 37.0 31.0 37.0 8 34.84319944608171 35.0 35.0 37.0 32.0 37.0 9 36.29296656570242 38.0 35.0 39.0 32.0 39.0 10 36.166041434457945 38.0 35.0 39.0 32.0 39.0 11 36.201820613828666 38.0 35.0 39.0 32.0 39.0 12 36.03244664924118 38.0 35.0 39.0 30.0 39.0 13 36.11079034000577 38.0 35.0 39.0 31.0 39.0 14 36.9678385785882 39.0 36.0 40.0 31.0 41.0 15 37.03243119766038 39.0 36.0 40.0 31.0 41.0 16 36.9727396529742 38.0 36.0 40.0 31.0 41.0 17 37.102408483836605 39.0 36.0 40.0 31.0 41.0 18 37.1077956566024 39.0 36.0 40.0 31.0 41.0 19 37.22552292116729 39.0 36.0 40.0 31.0 41.0 20 37.18497087377019 39.0 36.0 40.0 31.0 41.0 21 37.07276608770568 39.0 36.0 40.0 31.0 41.0 22 37.030637143846285 39.0 36.0 40.0 31.0 41.0 23 36.9148016539038 39.0 35.0 40.0 31.0 41.0 24 36.84482729099962 39.0 35.0 40.0 31.0 41.0 25 36.73621562388681 38.0 35.0 40.0 30.0 41.0 26 36.45365590665909 38.0 35.0 40.0 30.0 41.0 27 36.29032225733397 38.0 35.0 40.0 30.0 41.0 28 36.120326053411524 38.0 35.0 40.0 30.0 41.0 29 35.99496654315146 38.0 34.0 40.0 29.0 41.0 30 35.82199110740645 38.0 34.0 40.0 29.0 41.0 31 35.541301449065955 38.0 34.0 40.0 27.0 41.0 32 35.24364595500583 38.0 34.0 40.0 27.0 41.0 33 35.35147209715954 38.0 34.0 40.0 27.0 41.0 34 35.315311221982 38.0 34.0 40.0 27.0 41.0 35 35.192556347112664 38.0 34.0 40.0 26.0 41.0 36 35.08817883074965 38.0 34.0 40.0 25.0 41.0 37 34.93707907492639 38.0 33.0 40.0 25.0 41.0 38 34.790494103969095 38.0 33.0 40.0 25.0 41.0 39 34.69888042856839 38.0 33.0 40.0 24.0 41.0 40 34.510602916506755 38.0 33.0 40.0 23.0 41.0 41 34.366618822447556 38.0 33.0 40.0 22.0 41.0 42 34.152077381516655 38.0 33.0 40.0 21.0 41.0 43 33.7947123855278 37.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 11.0 16 45.0 17 96.0 18 234.0 19 540.0 20 1173.0 21 2224.0 22 4109.0 23 6756.0 24 11183.0 25 17285.0 26 25677.0 27 37540.0 28 51121.0 29 67428.0 30 85781.0 31 103531.0 32 125195.0 33 149270.0 34 178539.0 35 210452.0 36 259005.0 37 325649.0 38 385063.0 39 346668.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.26356220743789 24.163766711197844 14.12094912796707 21.451721953397197 2 17.57688309876859 23.43992279220923 36.457670812005624 22.52552329701655 3 20.46808267180383 26.50656044888095 32.147264422902246 20.87809245641297 4 13.107158383296923 15.869733986420147 35.17147287391468 35.85163475636824 5 10.888770751577418 41.355404315668274 34.41739396979091 13.338430962963397 6 31.455158886099717 35.851384190193095 15.463566216496694 17.2298907072105 7 24.034641608935527 35.76690162813724 21.535661622073544 18.66279514085369 8 27.882628121793534 33.679476583964515 20.250883558975133 18.187011735266815 9 25.171376823547543 13.545064535406462 24.27773255986339 37.005826081182605 10 16.39099515279734 27.84228696759386 33.598460187331625 22.168257692277173 11 30.949224017436066 21.5932918423588 25.669043008431135 21.788441131774007 12 19.881423733711635 27.52987270820692 32.25935102525415 20.3293525328273 13 31.20346516315825 20.761495662908313 29.644484182383778 18.390554991549656 14 20.706955758783284 22.511658635324736 29.136962394610823 27.644423211281154 15 22.808412508764597 28.749503565765476 27.95750564713517 20.48457827833475 16 21.189629734186873 28.488246567138997 27.92121531276714 22.40090838590699 17 18.76181054106842 26.893893994638717 28.708786562303068 25.63550890198979 18 19.939930935609922 26.295792534547857 33.52124404435523 20.243032485486996 19 19.222601737175292 24.42272685321875 34.929091860483084 21.425579549122872 20 24.06095105732662 23.384171818237625 33.684654951584356 18.870222172851406 21 23.402838998286548 24.385016643858183 32.13373384944397 20.0784105084113 22 21.41367765580309 23.789086757285315 33.40890687582817 21.388328711083417 23 20.302416668998326 26.15313685882726 34.57779808291819 18.966648389256225 24 19.01317017577635 25.064050978523554 32.847304555251306 23.075474290448796 25 20.185151699026594 26.26413767442016 33.98587725514778 19.56483337140547 26 21.98785004616682 24.954595321010768 32.38033272682399 20.67722190599843 27 20.330354797527914 26.69594671626763 31.93866808208715 21.035030404117304 28 20.06354358201887 25.968511348768487 32.23471201803074 21.733233051181898 29 19.074851215893247 25.88845545580702 33.29377171834524 21.742921609954493 30 18.28702940018216 26.066315679136647 35.44705390555409 20.199601015127097 31 19.948658990711092 25.40294173041836 34.172047923286655 20.476351355583887 32 21.18202922687389 25.68136251204284 31.831008148829625 21.305600112253646 33 22.285439140190523 25.59312145735969 31.295214144293542 20.826225258156242 34 20.276357786782384 28.740190856255616 31.282811118623457 19.700640238338547 35 18.854937636167055 29.61733951340884 31.4209148421621 20.106808008262004 36 19.809135392179915 25.560255527385422 33.90648953865338 20.724119541781285 37 20.02541576236638 25.939529194509092 32.871734757328746 21.163320285795777 38 20.41579786325518 25.335664712389704 33.479942386484126 20.76859503787099 39 21.33583509738881 24.90289516687081 33.39395642737736 20.367313308363023 40 19.470912816752186 25.814538434136804 32.24703152164244 22.467517227468566 41 20.5041642010259 25.386571406975012 32.003773526597804 22.10549086540128 42 17.91924001608635 27.350843176059907 32.386972730465544 22.3429440773882 43 18.756214563156668 27.108503923657494 31.878198111816825 22.25708340136901 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 176.0 1 274.0 2 372.0 3 1091.0 4 1810.0 5 1810.0 6 3178.5 7 4547.0 8 5146.5 9 5746.0 10 8816.0 11 11886.0 12 11886.0 13 21733.5 14 31581.0 15 51381.0 16 71181.0 17 69366.0 18 67551.0 19 67551.0 20 71011.5 21 74472.0 22 59495.0 23 44518.0 24 47508.5 25 50499.0 26 50499.0 27 54409.5 28 58320.0 29 60780.0 30 63240.0 31 67375.5 32 71511.0 33 71511.0 34 77644.0 35 83777.0 36 91944.5 37 100112.0 38 104172.5 39 108233.0 40 108233.0 41 114802.5 42 121372.0 43 140503.5 44 159635.0 45 206016.0 46 252397.0 47 252397.0 48 252750.0 49 253103.0 50 227086.5 51 201070.0 52 186188.5 53 171307.0 54 171307.0 55 146191.0 56 121075.0 57 98876.0 58 76677.0 59 66111.0 60 55545.0 61 55545.0 62 48835.5 63 42126.0 64 36541.5 65 30957.0 66 26251.5 67 21546.0 68 21546.0 69 18256.5 70 14967.0 71 12525.5 72 10084.0 73 7966.0 74 5848.0 75 5848.0 76 4497.5 77 3147.0 78 2472.5 79 1798.0 80 1413.0 81 1028.0 82 1028.0 83 809.5 84 591.0 85 480.0 86 369.0 87 295.5 88 222.0 89 222.0 90 187.5 91 153.0 92 85.0 93 17.0 94 11.5 95 6.0 96 6.0 97 4.5 98 3.0 99 2.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2394577.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.57953788647824 #Duplication Level Percentage of deduplicated Percentage of total 1 74.92787377072833 31.15466366203258 2 13.251871496736168 11.020133859305652 3 4.845139809845233 6.043760228662314 4 2.1936224612674375 3.648392329475963 5 1.2319366903624356 2.561167914533375 6 0.734426252529346 1.8322262515120906 7 0.45647830168503944 1.3286109787487839 8 0.3330851481590469 1.1079621229841847 9 0.24790332136867677 0.9276934988729416 >10 1.5165818101158473 12.088519555942275 >50 0.15578904496961654 4.496710785221585 >100 0.08944009164926678 7.093452237346091 >500 0.006909759228685867 1.9690082456478302 >1k 0.007417829760206885 6.123981957324186 >5k 9.14526956737835E-4 2.8567794461617924 >10k+ 6.096846378252235E-4 5.746936926228308 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34140 1.4257215366221256 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 32880 1.3731026398399384 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28879 1.2060167620418971 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 18147 0.7578373967510755 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11895 0.4967474422413645 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 10079 0.42090941322830716 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9946 0.4153551963457429 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9170 0.3829486376925862 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9154 0.3822804612255108 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7681 0.3207664652253822 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7241 0.3023916123808088 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7226 0.30176519694292564 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6308 0.2634285721444748 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5506 0.2299362267323206 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5383 0.22479962014167848 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4834 0.20187281511515395 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4348 0.1815769549277388 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4304 0.17973946964328147 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4183 0.17468638511102377 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3594 0.15008913891681078 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3486 0.14557894776405186 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3279 0.13693441472126391 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3275 0.1367673706044951 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3153 0.1316725250430452 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3116 0.1301273669629333 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2974 0.12419730081763918 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2867 0.11972887069407248 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2615 0.10920509133763501 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2587 0.10803578252025306 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2557 0.10678295164448669 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2395 0.10001766491534832 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.1761029192212235E-5 0.0 2 0.0 0.0 0.0 4.1761029192212235E-5 0.0 3 0.0 0.0 0.0 4.1761029192212235E-5 0.0 4 0.0 0.0 0.0 4.1761029192212235E-5 0.0 5 0.0 0.0 0.0 8.352205838442447E-5 0.0 6 4.1761029192212235E-5 0.0 0.0 8.352205838442447E-5 0.0 7 8.352205838442447E-5 0.0 0.0 8.352205838442447E-5 0.0 8 8.352205838442447E-5 0.0 0.0 1.252830875766367E-4 0.0 9 8.352205838442447E-5 0.0 0.0 3.340882335376979E-4 0.0 10 8.352205838442447E-5 0.0 0.0 7.516985254598203E-4 0.0 11 8.352205838442447E-5 0.0 0.0 0.001211069846574155 0.0 12 8.352205838442447E-5 0.0 0.0 0.0015033970509196405 0.0 13 8.352205838442447E-5 0.0 0.0 0.0016286801384962771 0.0 14 8.352205838442447E-5 0.0 0.0 0.0022550955763794606 0.0 15 8.352205838442447E-5 0.0 0.0 0.0032573602769925543 0.0 16 2.088051459610612E-4 0.0 0.0 0.005345411736603166 0.0 17 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.007600507312982627 0.0 18 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.008352205838442447 0.0 19 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.009229187451478904 0.0 20 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.01231950361170261 0.0 21 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.018583657990534446 0.0 22 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.03407699982084519 0.0 23 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.05520808059210457 0.0 24 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.08277035985896465 0.0 25 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.09220835245640462 0.0 26 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.1041102457761851 0.0 27 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.18729821592707188 0.0 28 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.27320065297545243 0.0 29 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.36945982526350163 0.0 30 2.088051459610612E-4 4.1761029192212235E-5 0.0 0.571207357291079 0.0 31 4.176102919221224E-4 4.1761029192212235E-5 0.0 0.8497951830323268 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7510 0.0 30.127165 1 ATTGGAC 960 0.0 21.968748 3 GTATTGG 995 0.0 20.638191 1 TATACCG 90 2.1541982E-6 18.5 5 TTGGACC 1660 0.0 18.165663 4 TGGACCC 1635 0.0 18.103975 5 GGACCCT 1625 0.0 17.987692 6 TATTGGA 1165 0.0 17.785408 2 CGTCTGT 705 0.0 17.319149 34 GTATCAA 13650 0.0 16.995605 2 CGTGACT 100 5.883143E-6 16.650002 12 ACCGACC 100 5.883143E-6 16.650002 8 AGCCGTC 125 1.6597915E-7 16.279999 12 GACCCTC 1800 0.0 15.930555 7 TGCGCGC 75 0.0041061337 14.799999 19 TCCCGTA 75 0.0041061337 14.799999 2 CTAGCGG 75 0.0041061337 14.799999 29 CGGACCA 125 2.9618022E-6 14.799999 9 TATACTG 290 0.0 14.672414 5 ACAGCGT 90 8.2786306E-4 14.388888 8 >>END_MODULE