##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088214_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 718389 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.956987091951575 31.0 30.0 31.0 27.0 34.0 2 30.23985194650809 31.0 30.0 31.0 27.0 34.0 3 30.32989230068946 31.0 30.0 33.0 27.0 34.0 4 34.327133349758974 35.0 35.0 37.0 30.0 37.0 5 34.07963512804344 35.0 33.0 37.0 30.0 37.0 6 34.30269672837418 35.0 35.0 37.0 30.0 37.0 7 34.12221929901488 35.0 35.0 37.0 30.0 37.0 8 34.29726095471952 35.0 35.0 37.0 30.0 37.0 9 35.68013012448687 37.0 35.0 39.0 30.0 39.0 10 35.4113050171982 37.0 34.0 39.0 30.0 39.0 11 35.56993077566611 37.0 35.0 39.0 30.0 39.0 12 35.31720418881692 37.0 34.0 39.0 30.0 39.0 13 35.444273228014346 37.0 34.0 39.0 30.0 39.0 14 36.16589897673823 38.0 34.0 40.0 29.0 41.0 15 36.28381420094127 38.0 34.0 40.0 30.0 41.0 16 36.150060760952634 38.0 34.0 40.0 29.0 41.0 17 36.26705447884085 38.0 34.0 40.0 30.0 41.0 18 36.268131889547305 38.0 34.0 40.0 30.0 41.0 19 36.37902584811293 38.0 35.0 40.0 30.0 41.0 20 36.355187788231724 38.0 35.0 40.0 30.0 41.0 21 36.25602841914339 38.0 34.0 40.0 29.0 41.0 22 36.19196285021068 38.0 34.0 40.0 29.0 41.0 23 36.009259607260134 38.0 34.0 40.0 29.0 41.0 24 35.94573970369814 38.0 34.0 40.0 29.0 41.0 25 35.81726056495854 38.0 34.0 40.0 28.0 41.0 26 35.52037266717614 38.0 34.0 40.0 27.0 41.0 27 35.30697992313357 38.0 34.0 40.0 27.0 41.0 28 35.116055507531435 37.0 33.0 40.0 27.0 41.0 29 34.952773497367026 37.0 33.0 40.0 26.0 41.0 30 34.750146508368026 37.0 33.0 40.0 26.0 41.0 31 34.46406612573411 37.0 33.0 39.0 25.0 40.0 32 34.18501675276208 36.0 33.0 39.0 24.0 40.0 33 34.365794854876675 37.0 33.0 39.0 25.0 40.0 34 34.30019669009408 37.0 33.0 39.0 25.0 41.0 35 34.185698834475474 37.0 33.0 39.0 24.0 41.0 36 34.05382738321439 37.0 33.0 39.0 24.0 40.0 37 33.91446556113749 37.0 33.0 40.0 23.0 41.0 38 33.76262999572655 37.0 32.0 39.0 23.0 41.0 39 33.68089433440657 37.0 32.0 40.0 22.0 41.0 40 33.501687804239765 37.0 32.0 40.0 21.0 41.0 41 33.35900048580922 37.0 31.0 40.0 19.0 41.0 42 33.1151409612341 37.0 31.0 40.0 18.0 41.0 43 32.728141717091994 36.0 31.0 39.0 16.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 4.0 14 7.0 15 15.0 16 33.0 17 86.0 18 180.0 19 341.0 20 671.0 21 1302.0 22 2209.0 23 3508.0 24 5282.0 25 7884.0 26 11017.0 27 15279.0 28 20264.0 29 25501.0 30 31841.0 31 37722.0 32 44204.0 33 52184.0 34 61367.0 35 71876.0 36 86664.0 37 100330.0 38 95986.0 39 42632.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.882570585017305 25.861476164028126 14.604900687510527 19.65105256344404 2 21.76856828264353 25.49162083495154 31.82955195583451 20.910258926570425 3 24.659202743917294 26.174259349739486 30.570902394106813 18.59563551223641 4 17.593392994603203 18.381266973742637 32.329559611853746 31.695780419800414 5 11.38213419192109 42.80034911447698 33.30911247249053 12.508404221111402 6 32.07899898244545 36.49415567331905 14.827203645935558 16.599641698299948 7 23.941764141711523 36.18624449984618 21.621015911991968 18.250975446450322 8 27.96896945805128 35.114123406678 20.00712705790317 16.909780077367554 9 25.485496019566 13.536955604832478 23.72809160496611 37.24945677063541 10 16.859389550786553 28.957431141067026 33.17868174484854 21.004497563297882 11 32.207898506241044 21.511047635751662 24.51721838725259 21.763835470754703 12 18.469241594734886 28.485263554982048 32.690923719600384 20.35457113068268 13 31.290289801207983 20.654965485273298 29.655381694318816 18.399363019199903 14 20.455352183844685 22.732252303417784 29.50393171387646 27.30846379886106 15 23.664616245516008 29.164561261377887 27.28925415060643 19.881568342499676 16 21.070617729391735 28.645065556404674 28.393669724898352 21.89064698930524 17 18.71604381470206 27.608162151703326 29.605687169486174 24.070106864108443 18 19.52897385678233 26.43052719348431 33.1953857868091 20.845113162924264 19 19.28815725185102 25.008178020543188 34.8674603870605 20.836204340545304 20 23.445654095483086 24.232692872524495 33.90962278097243 18.41203025101999 21 22.544888632760244 24.798681494287912 32.552976173076146 20.103453699875693 22 21.226104519974555 24.08263489557886 34.025576672248604 20.665683912197988 23 20.162474648136318 26.542165873920677 34.68427272689309 18.611086751049918 24 19.37780227703932 25.334463640172665 33.048390217556225 22.23934386523179 25 20.099138489035884 26.86497148480837 33.72128470786719 19.31460531828856 26 21.611411087864653 25.166727218818775 32.60197469616043 20.619886997156136 27 20.99252633322615 26.890584349147883 32.16224079154887 19.954648526077097 28 20.396192035234392 26.354802203263134 32.75077986995903 20.498225891543438 29 19.350936609552765 25.6846917199456 34.23047958696473 20.733892083536915 30 19.012262158802542 25.957246004601963 35.31443270985496 19.716059126740525 31 19.993485423635384 25.835167297940252 33.80229931137587 20.36904796704849 32 21.20174445878208 26.41966956620995 32.066053349926015 20.312532625081957 33 22.247835086561736 26.29675565745021 31.327177893870868 20.128231362117184 34 20.92863337272703 28.42874821301551 31.512871160332356 19.129747253925103 35 19.512409015171446 28.811131573562516 31.819668731007848 19.85679068025819 36 20.17834348799884 25.600336308044806 34.21725555374595 20.004064650210402 37 20.439065742933145 25.904628272426223 33.21849304485453 20.437812939786106 38 20.683779957655254 25.66186286259951 33.381357453969926 20.27299972577531 39 21.539305306734928 25.40086220696586 33.169216121070896 19.890616365228308 40 20.324782255853027 25.847277728361657 31.940216233823183 21.88772378196214 41 20.992247932526805 25.89126503885778 31.710118055816555 21.40636897279886 42 18.74973029932251 27.769356156622667 31.31673786764552 22.164175676409297 43 20.106794508267807 26.676633411703133 31.37381001101075 21.842762069018317 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 79.0 1 86.0 2 93.0 3 208.5 4 324.0 5 324.0 6 722.5 7 1121.0 8 1262.0 9 1403.0 10 2295.0 11 3187.0 12 3187.0 13 6283.0 14 9379.0 15 15332.5 16 21286.0 17 19920.5 18 18555.0 19 18555.0 20 21571.5 21 24588.0 22 19647.5 23 14707.0 24 15575.0 25 16443.0 26 16443.0 27 17496.5 28 18550.0 29 19776.5 30 21003.0 31 22503.5 32 24004.0 33 24004.0 34 25927.5 35 27851.0 36 30000.5 37 32150.0 38 33265.0 39 34380.0 40 34380.0 41 36414.0 42 38448.0 43 43315.0 44 48182.0 45 60005.0 46 71828.0 47 71828.0 48 70441.0 49 69054.0 50 62036.5 51 55019.0 52 50875.5 53 46732.0 54 46732.0 55 40318.5 56 33905.0 57 29014.5 58 24124.0 59 21264.0 60 18404.0 61 18404.0 62 16054.5 63 13705.0 64 11899.0 65 10093.0 66 8546.0 67 6999.0 68 6999.0 69 5949.0 70 4899.0 71 4141.5 72 3384.0 73 2676.5 74 1969.0 75 1969.0 76 1530.5 77 1092.0 78 864.5 79 637.0 80 512.0 81 387.0 82 387.0 83 282.0 84 177.0 85 146.5 86 116.0 87 92.0 88 68.0 89 68.0 90 60.0 91 52.0 92 29.5 93 7.0 94 6.0 95 5.0 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 718389.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.87945088929769 #Duplication Level Percentage of deduplicated Percentage of total 1 86.22462919761095 51.63083449486249 2 8.305555208410711 9.946641704207595 3 2.1958916272579754 3.9446635455784174 4 0.91956396472163 2.202519410604669 5 0.5242394128925194 1.5695584089265937 6 0.3443907163300285 1.2373156191128396 7 0.22946483958194408 0.9618160014797315 8 0.18450517952050707 0.8838455068735407 9 0.13666423871559935 0.7365041613444591 >10 0.8288768095575858 9.08859851722849 >50 0.057194812799875795 2.3394825020840173 >100 0.03968608924831836 4.801967534449085 >500 0.005602742011442464 2.3939944106407602 >1k 0.002801371005721232 3.5025063618483525 >5k 7.00342751430308E-4 3.153597682123996 >10k+ 2.334475838101027E-4 1.6061541386349607 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 11490 1.5994120177229885 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 9821 1.367086634121625 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6586 0.9167735029350393 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6153 0.8564997515273759 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3708 0.5161548965811003 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 3400 0.47328118888234644 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 2721 0.3787641514555485 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2713 0.3776505486581782 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 2128 0.29621834410048037 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1955 0.2721366836073492 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1744 0.2427654098267095 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 1501 0.20893972485658885 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1461 0.2033717108697377 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 1457 0.20281490947105257 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1254 0.1745572384877831 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1014 0.1411491545666763 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 945 0.13154433043935806 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 918 0.12778592099823355 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 866 0.12054750281532706 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 851 0.11845949757025791 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 829 0.11539708987748977 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 819 0.114005086380777 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 807 0.11233468218472165 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 781 0.1087154730932684 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 774 0.10774107064556947 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 772 0.10746266994622691 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 770 0.10718426924688434 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 738 0.10272985805740345 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 735 0.10231225700838961 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.3920034967127836E-4 0.0 5 0.0 0.0 0.0 1.3920034967127836E-4 0.0 6 0.0 0.0 0.0 1.3920034967127836E-4 0.0 7 0.0 0.0 0.0 1.3920034967127836E-4 0.0 8 0.0 0.0 0.0 1.3920034967127836E-4 0.0 9 0.0 0.0 0.0 1.3920034967127836E-4 0.0 10 0.0 0.0 0.0 1.3920034967127836E-4 0.0 11 0.0 0.0 0.0 1.3920034967127836E-4 0.0 12 0.0 0.0 0.0 2.7840069934255673E-4 0.0 13 0.0 0.0 0.0 2.7840069934255673E-4 0.0 14 0.0 0.0 0.0 6.960017483563918E-4 0.0 15 0.0 0.0 0.0 8.352020980276702E-4 0.0 16 0.0 0.0 0.0 0.001531203846384062 0.0 17 0.0 0.0 0.0 0.002644806643754289 0.0 18 0.0 0.0 0.0 0.003340808392110681 0.0 19 0.0 0.0 0.0 0.0038976097907957945 0.0 20 0.0 0.0 0.0 0.005568013986851135 0.0 21 0.0 0.0 0.0 0.0072384181829064755 0.0 22 0.0 0.0 0.0 0.014476836365812951 0.0 23 0.0 0.0 0.0 0.022132855597733262 0.0 24 0.0 0.0 0.0 0.037444894061573884 0.0 25 0.0 0.0 0.0 0.043012908048425016 0.0 26 0.0 0.0 0.0 0.051504129378372995 0.0 27 0.0 0.0 0.0 0.09966745036463531 0.0 28 0.0 0.0 0.0 0.15075397869399448 0.0 29 0.0 0.0 0.0 0.21534294094146764 0.0 30 0.0 0.0 0.0 0.32976562837125845 0.0 31 0.0 0.0 0.0 0.4945788423820521 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2255 0.0 29.698448 1 CGACGAG 25 0.0054949885 29.6 24 ACGTTTA 40 5.937076E-5 27.75 26 TATAGAC 35 8.866144E-4 26.42857 3 ACTCGGG 50 9.084892E-6 25.900002 16 GCTATGC 40 0.001930486 23.125 3 AACACCG 40 0.001930486 23.125 5 TACTCGG 60 3.7237827E-5 21.583334 15 TACCAAC 45 0.0038244321 20.555555 7 CCGTATA 45 0.0038244321 20.555555 2 TCTAATG 45 0.0038244321 20.555555 3 GAGTATA 55 5.1405135E-4 20.181818 1 GCGCTAC 55 5.1405135E-4 20.181818 1 TCACGTT 55 5.1405135E-4 20.181818 24 CGGACCA 55 5.1405135E-4 20.181818 9 GTATCAA 3495 0.0 19.373388 2 GTATTGG 245 0.0 18.87755 1 TAGACGT 50 0.0070323767 18.5 16 TACGGAC 50 0.0070323767 18.5 30 ATCACGT 60 9.2322193E-4 18.5 23 >>END_MODULE