##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088212_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2025315 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15261971594542 31.0 31.0 33.0 30.0 34.0 2 31.31834159130802 31.0 31.0 34.0 30.0 34.0 3 31.35745698817221 31.0 31.0 34.0 28.0 34.0 4 35.3069339831088 37.0 35.0 37.0 33.0 37.0 5 35.192868763624425 37.0 35.0 37.0 32.0 37.0 6 35.24545268266912 37.0 35.0 37.0 32.0 37.0 7 35.07624492980104 37.0 35.0 37.0 32.0 37.0 8 35.139776775464554 37.0 35.0 37.0 32.0 37.0 9 36.62978944016116 39.0 35.0 39.0 32.0 39.0 10 36.493734554871715 38.0 35.0 39.0 32.0 39.0 11 36.53164322586857 38.0 35.0 39.0 32.0 39.0 12 36.376652520719 38.0 35.0 39.0 32.0 39.0 13 36.41443429787465 38.0 35.0 39.0 32.0 39.0 14 37.3247657771754 39.0 36.0 41.0 32.0 41.0 15 37.380322567106845 39.0 36.0 41.0 32.0 41.0 16 37.34799426262088 39.0 36.0 41.0 32.0 41.0 17 37.466379303960125 39.0 36.0 41.0 32.0 41.0 18 37.494276692761375 39.0 36.0 41.0 32.0 41.0 19 37.60062410044857 39.0 36.0 41.0 32.0 41.0 20 37.574040087591314 39.0 36.0 41.0 32.0 41.0 21 37.448530722381456 39.0 36.0 41.0 32.0 41.0 22 37.41007695099281 39.0 36.0 41.0 32.0 41.0 23 37.2861243806519 39.0 36.0 41.0 31.0 41.0 24 37.19016399918038 39.0 36.0 41.0 31.0 41.0 25 37.11087855469396 39.0 36.0 40.0 31.0 41.0 26 36.84186854884302 39.0 35.0 40.0 31.0 41.0 27 36.68073460177799 38.0 35.0 40.0 30.0 41.0 28 36.54342559058714 38.0 35.0 40.0 30.0 41.0 29 36.38663022789048 38.0 35.0 40.0 30.0 41.0 30 36.18802704764444 38.0 35.0 40.0 30.0 41.0 31 35.90687572056692 38.0 35.0 40.0 30.0 41.0 32 35.60947210680808 38.0 34.0 40.0 29.0 41.0 33 35.72948849931986 38.0 34.0 40.0 29.0 41.0 34 35.70017799700293 38.0 34.0 40.0 29.0 41.0 35 35.58909749841383 38.0 34.0 40.0 28.0 41.0 36 35.48884346385624 38.0 34.0 40.0 27.0 41.0 37 35.33809555550618 38.0 34.0 40.0 27.0 41.0 38 35.196281566077374 38.0 34.0 40.0 26.0 41.0 39 35.10617706381476 38.0 34.0 40.0 25.0 41.0 40 34.90422921866475 38.0 34.0 40.0 24.0 41.0 41 34.73876014348385 38.0 33.0 40.0 23.0 41.0 42 34.46843379918679 38.0 33.0 40.0 22.0 41.0 43 34.136085004061094 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 6.0 15 5.0 16 16.0 17 56.0 18 124.0 19 358.0 20 666.0 21 1428.0 22 2450.0 23 4268.0 24 7009.0 25 11175.0 26 17494.0 27 25558.0 28 36216.0 29 48955.0 30 63174.0 31 76919.0 32 94377.0 33 116101.0 34 142080.0 35 172606.0 36 217148.0 37 289348.0 38 349120.0 39 348656.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.44353594379146 23.08569284284173 14.445506007707444 22.025265205659366 2 17.21722299987903 23.298696745938287 36.810027082206965 22.674053171975718 3 19.722907300839623 26.036937464048805 33.172617592818895 21.06753764229268 4 12.751349790032663 15.896885175886219 35.407973574481005 35.943791459600114 5 10.996659778849216 40.80975058200823 34.63959927221198 13.553990366930577 6 31.15949864588965 36.043775906463935 15.444116100458446 17.35260934718797 7 24.10168294808462 36.05765029143615 21.20489899102115 18.635767769458084 8 27.9049925567134 33.309386441121504 20.229939540269047 18.55568146189605 9 25.099058664948416 13.755045511438963 24.603728308929725 36.5421675146829 10 16.394783033750304 28.290611583877073 33.752873009877476 21.561732372495143 11 30.715567701814283 21.958510157679175 25.77549665113822 21.550425489368322 12 20.46012595571553 28.019937639330177 31.634782737500096 19.885153667454198 13 31.206750554851958 21.11765330331331 29.35824797624073 18.317348165593994 14 20.96873819628058 23.131414125703902 29.099473415246518 26.800374262769 15 22.84128641717461 29.313810444301257 27.384332807489205 20.460570331034926 16 21.603355527411786 28.482532346820122 27.934123827651504 21.97998829811659 17 18.956261124812684 27.53438354033817 28.310262848001422 25.199092486847725 18 19.964252474306466 26.623068510330494 33.45568467127335 19.956994344089686 19 19.145219385626433 25.01921923256382 35.14258275873136 20.692978623078385 20 23.856437146814198 23.780202092020254 33.497702826473905 18.86565793469164 21 23.298844871044754 24.88225288411926 32.14053122600682 19.678371018829168 22 21.16080708433009 24.745484035816652 33.078508775178186 21.015200104675074 23 20.396382784900126 26.799584262201186 34.13419640895367 18.669836543945014 24 18.788287254081464 25.962084910248528 32.32563823405248 22.923989601617524 25 20.1338557212088 26.879226194443827 33.753712385480775 19.233205698866595 26 21.476264186064885 25.871580470198463 32.26145068791768 20.390704655818972 27 20.00952938184924 27.405613447784667 31.7859197211298 20.79893744923629 28 19.902632430017057 27.022512547430892 31.730718431453873 21.344136591098177 29 18.851734174683937 26.956103124699123 32.76013854634958 21.43202415426736 30 18.21474684184929 27.138543880828415 35.14194088327001 19.50476839405228 31 19.97728748367538 26.53365032106117 33.588997267091784 19.900064928171666 32 21.088176407126795 26.72724983521082 31.36692316997603 20.81765058768636 33 21.96448453697326 26.800670512981934 30.758277107511674 20.476567842533136 34 20.045079407400824 29.780058904417338 30.793086507530926 19.381775180650912 35 18.393681970458918 30.99917790565912 31.029889177732844 19.577250946149118 36 19.66499038421184 27.036781932687013 33.402655883158914 19.89557179994223 37 19.696936032172772 27.270276475511217 32.46082708121946 20.571960411096548 38 20.029674396328474 26.94993124526308 32.94243117737241 20.077963181036036 39 21.293033429367778 26.28894764518112 32.56362590510612 19.854393020344983 40 19.175239407203325 27.142987634022365 31.921404818509714 21.760368140264603 41 20.50071223488692 26.407694605530494 31.746419692739153 21.345173466843427 42 17.5420613583566 28.36106975951889 32.22071628363983 21.87615259848468 43 18.198551830209126 28.09706144476291 31.889557920619755 21.814828804408204 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 211.0 1 279.0 2 347.0 3 967.0 4 1587.0 5 1587.0 6 2784.5 7 3982.0 8 4325.5 9 4669.0 10 7207.5 11 9746.0 12 9746.0 13 17808.5 14 25871.0 15 42999.5 16 60128.0 17 58865.5 18 57603.0 19 57603.0 20 62151.5 21 66700.0 22 53715.0 23 40730.0 24 44492.5 25 48255.0 26 48255.0 27 51686.0 28 55117.0 29 56224.5 30 57332.0 31 61387.0 32 65442.0 33 65442.0 34 70422.5 35 75403.0 36 81166.5 37 86930.0 38 89020.0 39 91110.0 40 91110.0 41 95589.5 42 100069.0 43 114548.0 44 129027.0 45 166819.0 46 204611.0 47 204611.0 48 209772.5 49 214934.0 50 195030.5 51 175127.0 52 160273.0 53 145419.0 54 145419.0 55 124409.0 56 103399.0 57 81466.5 58 59534.0 59 51250.0 60 42966.0 61 42966.0 62 37555.0 63 32144.0 64 27783.5 65 23423.0 66 19524.0 67 15625.0 68 15625.0 69 13108.0 70 10591.0 71 8901.5 72 7212.0 73 5798.0 74 4384.0 75 4384.0 76 3350.5 77 2317.0 78 1867.5 79 1418.0 80 1149.5 81 881.0 82 881.0 83 667.5 84 454.0 85 387.5 86 321.0 87 245.5 88 170.0 89 170.0 90 133.5 91 97.0 92 59.5 93 22.0 94 14.0 95 6.0 96 6.0 97 3.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2025315.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.55039829711635 #Duplication Level Percentage of deduplicated Percentage of total 1 69.39671692642975 24.670809272468137 2 14.374937741694133 10.220695244269534 3 6.125867099239255 6.53331045879469 4 3.097814670310484 4.405141815207516 5 1.808962311949891 3.2154665347145532 6 1.1498623885125587 2.452683953909701 7 0.757444751549446 1.88492238239502 8 0.5119988197753993 1.4561409576535151 9 0.4007013952364402 1.2820584778979123 >10 2.05141729965211 13.46239537145981 >50 0.1816883156416419 4.517150611881327 >100 0.12022203304813588 8.21535744684331 >500 0.010484178262917289 2.5800941745189343 >1k 0.010064811132400597 6.9736290925636295 >5k 0.0012581013915500747 3.2060594702206275 >10k+ 5.591561740222554E-4 4.924084735201831 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 30757 1.518627966513851 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 29207 1.4420966615069755 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 25215 1.2449915198376549 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 13906 0.6866092435003938 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9656 0.47676534267509 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8873 0.4381046898877459 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8591 0.4241809298800433 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 7179 0.3544633797705542 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6778 0.3346639905397432 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6270 0.3095814725116834 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6067 0.29955834030755707 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5556 0.27432769717303235 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5544 0.27373519674717267 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4982 0.24598642680274427 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4812 0.23759267076973212 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4733 0.23369204296615587 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4508 0.22258265998128685 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3732 0.1842676324423608 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3548 0.17518262591251235 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3353 0.16555449399229255 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3238 0.15987636491113727 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3201 0.15804948859806994 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2887 0.14254572745474162 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2849 0.14066947610618596 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2668 0.13173259468280243 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 2461 0.12151196233672293 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2431 0.12003071127207374 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2351 0.11608070843300917 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2307 0.11390820687152368 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 2230 0.11010632913892407 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTC 2207 0.10897070332269301 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2175 0.1073907021870672 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 2157 0.10650195154827768 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 1.4812510646492028E-4 0.0 10 0.0 4.937503548830676E-5 0.0 1.4812510646492028E-4 0.0 11 0.0 4.937503548830676E-5 0.0 1.4812510646492028E-4 0.0 12 0.0 4.937503548830676E-5 0.0 1.4812510646492028E-4 0.0 13 0.0 4.937503548830676E-5 0.0 1.4812510646492028E-4 0.0 14 0.0 4.937503548830676E-5 0.0 2.9625021292984055E-4 0.0 15 0.0 4.937503548830676E-5 0.0 7.406255323246014E-4 0.0 16 0.0 4.937503548830676E-5 0.0 0.0012837509226959758 0.0 17 0.0 4.937503548830676E-5 0.0 0.002221876596973804 0.0 18 0.0 4.937503548830676E-5 0.0 0.0025675018453919516 0.0 19 0.0 4.937503548830676E-5 0.0 0.0030612522002750188 0.0 20 0.0 4.937503548830676E-5 0.0 0.0035550025551580864 0.0 21 0.0 4.937503548830676E-5 0.0 0.004888128513342369 0.0 22 0.0 9.875007097661352E-5 0.0 0.0068631299328746394 0.0 23 0.0 9.875007097661352E-5 0.0 0.010862507807427486 0.0 24 0.0 9.875007097661352E-5 0.0 0.01673813703053599 0.0 25 0.0 9.875007097661352E-5 0.0 0.021527515472901746 0.0 26 0.0 9.875007097661352E-5 0.0 0.029180645973589294 0.0 27 0.0 9.875007097661352E-5 0.0 0.0899119396242066 0.0 28 0.0 9.875007097661352E-5 0.0 0.15286510987179772 0.0 29 0.0 9.875007097661352E-5 0.0 0.22905078963025505 0.0 30 0.0 9.875007097661352E-5 0.0 0.3809777738277749 0.0 31 0.0 9.875007097661352E-5 0.0 0.5960554284148392 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6110 0.0 31.459084 1 GTATTGG 515 0.0 22.990292 1 ATTGGAC 530 0.0 21.990564 3 CGAATTA 125 1.8189894E-11 20.72 15 TATACCG 155 1.8189894E-12 19.096773 5 GTATCAA 10690 0.0 17.998129 2 TTGGACC 1080 0.0 17.98611 4 CGTCTGT 655 0.0 17.793894 34 CCGAATT 150 2.5102054E-10 17.266666 14 TATTGGA 730 0.0 17.232876 2 ACGTGAG 65 0.0015804956 17.076925 11 TTTTTAC 1540 0.0 16.57792 1 GGACCCT 1120 0.0 16.517859 6 ACGTTTA 160 6.311893E-10 16.1875 26 TGGACCC 1215 0.0 15.987655 5 GACCCTC 1130 0.0 15.880531 7 TATAGAC 95 7.063922E-5 15.578948 3 ACCGACG 315 0.0 15.269841 8 CTAATAC 195 4.1836756E-11 15.179487 3 GTATAGA 210 9.094947E-12 14.97619 1 >>END_MODULE