##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088211_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2040549 Sequences flagged as poor quality 0 Sequence length 43 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.011970307990644 31.0 31.0 33.0 28.0 34.0 2 31.16873204221021 31.0 31.0 34.0 28.0 34.0 3 31.20807635592186 31.0 31.0 34.0 28.0 34.0 4 35.17293091222019 35.0 35.0 37.0 33.0 37.0 5 35.03560071333744 35.0 35.0 37.0 32.0 37.0 6 35.10213966927528 37.0 35.0 37.0 32.0 37.0 7 34.93802501189631 36.0 35.0 37.0 32.0 37.0 8 35.001378060512145 37.0 35.0 37.0 32.0 37.0 9 36.450748793584474 38.0 35.0 39.0 32.0 39.0 10 36.304567055238564 38.0 35.0 39.0 32.0 39.0 11 36.350225356019386 38.0 35.0 39.0 32.0 39.0 12 36.19983788676479 38.0 35.0 39.0 32.0 39.0 13 36.2436466852793 38.0 35.0 39.0 32.0 39.0 14 37.14253811106717 39.0 36.0 41.0 31.0 41.0 15 37.19778745817915 39.0 36.0 41.0 32.0 41.0 16 37.16117329208953 39.0 36.0 40.0 31.0 41.0 17 37.27688381901145 39.0 36.0 40.0 32.0 41.0 18 37.30070632952211 39.0 36.0 40.0 32.0 41.0 19 37.40608924363002 39.0 36.0 41.0 32.0 41.0 20 37.36762900572346 39.0 36.0 41.0 32.0 41.0 21 37.25248842345859 39.0 36.0 41.0 31.0 41.0 22 37.21084668880777 39.0 36.0 40.0 31.0 41.0 23 37.099798632622885 39.0 36.0 40.0 31.0 41.0 24 36.99707627702153 39.0 36.0 40.0 31.0 41.0 25 36.923362291226525 39.0 35.0 40.0 31.0 41.0 26 36.63984447322755 38.0 35.0 40.0 30.0 41.0 27 36.4570049530788 38.0 35.0 40.0 30.0 41.0 28 36.306491047262284 38.0 35.0 40.0 30.0 41.0 29 36.15578209589674 38.0 35.0 40.0 30.0 41.0 30 35.962887438625586 38.0 35.0 40.0 30.0 41.0 31 35.681764564340284 38.0 34.0 40.0 29.0 41.0 32 35.380550528313705 38.0 34.0 40.0 27.0 41.0 33 35.491436863314725 38.0 34.0 40.0 28.0 41.0 34 35.450183749569355 38.0 34.0 40.0 27.0 41.0 35 35.34984751652619 38.0 34.0 40.0 27.0 41.0 36 35.24106208672274 38.0 34.0 40.0 26.0 41.0 37 35.083107046191984 38.0 34.0 40.0 25.0 41.0 38 34.939461390047484 38.0 33.0 40.0 25.0 41.0 39 34.84375087292685 38.0 33.0 40.0 24.0 41.0 40 34.64290198373085 38.0 33.0 40.0 24.0 41.0 41 34.47429000724805 38.0 33.0 40.0 23.0 41.0 42 34.224347957338935 38.0 33.0 40.0 21.0 41.0 43 33.884151765039704 38.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 3.0 15 6.0 16 14.0 17 62.0 18 180.0 19 392.0 20 828.0 21 1681.0 22 2939.0 23 5175.0 24 8518.0 25 13221.0 26 20112.0 27 28811.0 28 40257.0 29 53854.0 30 68041.0 31 83163.0 32 100789.0 33 122277.0 34 147729.0 35 176184.0 36 220326.0 37 285986.0 38 343680.0 39 316320.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.94454433586255 23.4686841629385 14.815669704574603 21.77110179662434 2 17.48475532810043 23.73748437307803 36.24799012422637 22.52977017459517 3 19.986288003865628 26.117187090336962 32.94765281304198 20.94887209275543 4 13.229625948703019 16.42396237483148 35.272811385563394 35.07360029090211 5 10.862958938991419 41.06051851732058 34.65621261729074 13.420309926397259 6 31.09663134774024 36.32130372757528 15.428641997815292 17.15342292686919 7 23.649321824665815 36.26293708212839 21.597521059283554 18.490220033922245 8 27.48363308109729 33.81055784497211 20.448369531924985 18.257439542005606 9 25.000526819008023 13.882391454456618 24.74931991341546 36.367761813119905 10 16.33281043483886 28.54099558501168 34.0545608069201 21.071633173229362 11 30.640479596422338 22.33550872828832 25.45138587703603 21.572625798253313 12 19.96663642970593 28.487823620015984 31.786935770716607 19.75860417956148 13 30.701247556417417 21.623739493636272 29.553174170284564 18.121838779661747 14 20.645179312038085 23.408749312072388 29.43766603987456 26.508405336014963 15 22.66605702680994 29.656087650921393 27.55101690770474 20.126838414563924 16 21.181799603930116 28.59117815842697 28.29444428925745 21.93257794838546 17 18.6029838048486 28.022899719634275 28.809501756635104 24.564614718882027 18 19.455891527231152 27.02204161723144 33.77767453758768 19.74439231794973 19 18.835470258249128 25.62810302521527 35.42992596600229 20.106500750533314 20 23.26746380508383 24.458711846664794 33.92636001389822 18.347464334353155 21 22.623176409877928 25.384051056847934 32.423284125987664 19.56948840728647 22 20.703594963904322 25.216694134764712 33.29540236475576 20.784308536575207 23 19.901604911227324 27.34293565114094 34.25053747790423 18.504921959727504 24 18.37123244773833 26.491008057145404 32.70761937106141 22.43014012405485 25 19.654955602634388 27.415171113264126 34.05593298666192 18.87394029743956 26 20.994350049913038 26.192853001814708 32.598972139360534 20.21382480891172 27 19.724985775886783 27.77218287823522 32.118611216883295 20.3842201289947 28 19.516071410194023 27.498531032579958 32.06637037385527 20.91902718337075 29 18.450279802151286 27.25158768547092 33.145295702284045 21.152836810093753 30 17.900427777034515 27.304808656885964 35.43007298526034 19.364690580819182 31 19.437906171329384 26.732560698125845 33.97938495963586 19.850148170908906 32 20.462140335762584 27.16386619483286 31.993840873215984 20.380152596188577 33 21.505487003742623 27.0788400572591 31.23296720637436 20.182705732623916 34 19.657944994214795 29.77242889046036 31.39659964058692 19.173026474737924 35 18.130414903048152 30.564127595073682 31.688383861402002 19.617073640476164 36 19.237567929023022 26.884480598113548 33.86201458529053 20.015936887572902 37 19.22776664515285 27.156613244768934 32.95216140362226 20.66345870645596 38 19.597471072735818 26.8452264562135 33.48368502790181 20.073617443148876 39 20.775683406769453 26.20534963874918 33.18866638340957 19.830300571071806 40 18.90976398998505 26.907268583111705 32.60534297387615 21.577624453027102 41 19.68190913327737 26.25303288477758 32.44896348972752 21.616094492217535 42 17.119951542452547 27.95164438589811 32.82626391230987 22.102140159339474 43 17.794524904817283 27.63942448821371 32.57098947391119 21.99506113305782 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 217.0 1 315.0 2 413.0 3 1055.0 4 1697.0 5 1697.0 6 3011.5 7 4326.0 8 4797.0 9 5268.0 10 7883.0 11 10498.0 12 10498.0 13 19052.0 14 27606.0 15 44927.0 16 62248.0 17 60972.5 18 59697.0 19 59697.0 20 64654.5 21 69612.0 22 56541.5 23 43471.0 24 46760.5 25 50050.0 26 50050.0 27 54041.0 28 58032.0 29 59784.5 30 61537.0 31 65876.5 32 70216.0 33 70216.0 34 75549.5 35 80883.0 36 87167.5 37 93452.0 38 94697.5 39 95943.0 40 95943.0 41 100428.0 42 104913.0 43 118227.0 44 131541.0 45 167553.0 46 203565.0 47 203565.0 48 206944.0 49 210323.0 50 189283.5 51 168244.0 52 153058.0 53 137872.0 54 137872.0 55 118855.0 56 99838.0 57 79267.0 58 58696.0 59 49969.5 60 41243.0 61 41243.0 62 35653.5 63 30064.0 64 25596.5 65 21129.0 66 17731.0 67 14333.0 68 14333.0 69 11936.5 70 9540.0 71 7728.5 72 5917.0 73 4788.5 74 3660.0 75 3660.0 76 2891.5 77 2123.0 78 1607.5 79 1092.0 80 865.5 81 639.0 82 639.0 83 482.5 84 326.0 85 254.0 86 182.0 87 143.0 88 104.0 89 104.0 90 67.5 91 31.0 92 18.5 93 6.0 94 3.5 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2040549.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.80671159240005 #Duplication Level Percentage of deduplicated Percentage of total 1 70.86532251226151 26.791848101234848 2 14.083843755559155 10.649276379576989 3 5.807368031569653 6.586724648414337 4 2.9043241384723264 4.39211780296276 5 1.6904391016099616 3.1954971789541826 6 1.0293352736805963 2.334946909435588 7 0.676729624352619 1.7909445213752884 8 0.46960765361449847 1.4203456897429638 9 0.35435683412489 1.2057359965700094 >10 1.8295002513360716 12.898668137960437 >50 0.17017305398645222 4.49593250901223 >100 0.09857800910134987 7.446666034876362 >500 0.01021088016542636 2.775873634331636 >1k 0.008509066804521967 6.246420942268186 >5k 0.0011781784806261185 2.9796333603384353 >10k+ 5.236348802782749E-4 4.789368152945824 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 30813 1.5100347994583811 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 29227 1.4323106183679 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 24903 1.220406861094735 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11827 0.5795989216627486 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9900 0.4851635515736206 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8063 0.395138759226071 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7421 0.36367663800281197 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 6740 0.330303266424869 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6364 0.3118768527489416 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 5838 0.28609947617038356 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 5663 0.27752335278398116 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5180 0.2538532522375106 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 5035 0.24674732143163433 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4420 0.21660837353084883 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4291 0.2102865454345865 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4136 0.20269055043520148 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3809 0.18666545130746678 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3751 0.18382307898511624 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3657 0.1792164755661344 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3227 0.15814371524525997 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3108 0.15231195134250636 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3081 0.15098877802003285 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2629 0.12883787647343925 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2603 0.12756370957031662 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2459 0.12050678518379122 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 2451 0.12011473382898426 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 2379 0.11658627163572156 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2341 0.11472402770038848 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2323 0.1138419121520728 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 2206 0.10810816108802093 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2188 0.10722604553970526 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 2177 0.10668697492684567 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTC 2059 0.10090421744344291 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 9.801283870174154E-5 0.0 0.0 0.0 0.0 6 2.4503209675435383E-4 0.0 0.0 0.0 0.0 7 2.4503209675435383E-4 0.0 0.0 0.0 0.0 8 2.4503209675435383E-4 0.0 0.0 4.900641935087077E-5 0.0 9 2.4503209675435383E-4 0.0 0.0 4.900641935087077E-5 0.0 10 2.4503209675435383E-4 0.0 0.0 9.801283870174154E-5 0.0 11 2.4503209675435383E-4 0.0 0.0 1.960256774034831E-4 0.0 12 2.4503209675435383E-4 0.0 0.0 4.410577741578369E-4 0.0 13 2.4503209675435383E-4 0.0 0.0 5.390706128595785E-4 0.0 14 2.4503209675435383E-4 0.0 0.0 6.3708345156132E-4 0.0 15 2.4503209675435383E-4 0.0 0.0 9.801283870174153E-4 0.0 16 2.9403851610522463E-4 0.0 0.0 0.0015682054192278647 0.0 17 3.430449354560954E-4 0.0 0.0 0.002156282451438314 0.0 18 3.430449354560954E-4 0.0 0.0 0.0024993273868944093 0.0 19 3.430449354560954E-4 0.0 0.0 0.0031364108384557294 0.0 20 3.430449354560954E-4 0.0 0.0 0.0036754814513153076 0.0 21 3.430449354560954E-4 0.0 0.0 0.005439712547946655 0.0 22 3.430449354560954E-4 0.0 0.0 0.008380097708998903 0.0 23 3.430449354560954E-4 0.0 0.0 0.014162855192401652 0.0 24 3.430449354560954E-4 0.0 0.0 0.022738978578804036 0.0 25 3.430449354560954E-4 0.0 0.0 0.029109813094417236 0.0 26 3.430449354560954E-4 0.0 0.0 0.03964619325485445 0.0 27 3.430449354560954E-4 0.0 0.0 0.12232002269977345 0.0 28 3.430449354560954E-4 0.0 0.0 0.2078852308863938 0.0 29 3.430449354560954E-4 0.0 0.0 0.3025166266529253 0.0 30 3.430449354560954E-4 0.0 0.0 0.48462448096076105 0.0 31 3.430449354560954E-4 0.0 0.0 0.7545028323260063 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6025 0.0 31.135267 1 CGCACTA 45 1.3237039E-4 24.666666 29 TATTCGG 45 0.0038268105 20.555555 5 ACGTTTA 100 1.2913006E-8 20.35 26 ATTGGAC 455 0.0 19.516483 3 GTATTGG 510 0.0 18.5 1 GTATCAA 10520 0.0 17.86692 2 GCGCACT 65 0.0015805014 17.076923 28 CGAATTA 145 2.9831426E-9 16.586206 15 CAATGCG 90 4.448677E-5 16.444445 19 TTTTTAC 1705 0.0 16.384165 1 CGTCTGT 705 0.0 16.269503 34 ACGATCT 265 0.0 16.056604 32 CGATCTG 255 0.0 15.960784 33 TGGACCC 1025 0.0 15.882926 5 GGACCCT 1040 0.0 15.653846 6 TTGGACC 1065 0.0 15.633802 4 GTTATCA 225 0.0 15.622222 1 TGCGACG 95 7.0639624E-5 15.578948 22 ACCGGGG 85 5.3666835E-4 15.235293 8 >>END_MODULE