##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088210_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3282521 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.069228803105904 31.0 31.0 33.0 30.0 34.0 2 31.221882205780254 31.0 31.0 34.0 28.0 34.0 3 31.281586012701823 31.0 31.0 34.0 28.0 34.0 4 35.23410969800346 37.0 35.0 37.0 33.0 37.0 5 35.08865838177425 35.0 35.0 37.0 32.0 37.0 6 35.148790213375634 37.0 35.0 37.0 32.0 37.0 7 34.99753360298381 37.0 35.0 37.0 32.0 37.0 8 35.055051285277386 37.0 35.0 37.0 32.0 37.0 9 36.564457927306485 38.0 35.0 39.0 32.0 39.0 10 36.396224121643094 38.0 35.0 39.0 32.0 39.0 11 36.42887707344447 38.0 35.0 39.0 32.0 39.0 12 36.27649084347061 38.0 35.0 39.0 32.0 39.0 13 36.32545808541666 38.0 35.0 39.0 32.0 39.0 14 37.274224902140766 39.0 36.0 41.0 32.0 41.0 15 37.32258712130098 39.0 36.0 41.0 32.0 41.0 16 37.29554571014169 39.0 36.0 41.0 32.0 41.0 17 37.36198031939476 39.0 36.0 41.0 32.0 41.0 18 37.35335767844288 39.0 36.0 41.0 32.0 41.0 19 37.44896194114219 39.0 36.0 41.0 32.0 41.0 20 37.405540741399676 39.0 36.0 41.0 32.0 41.0 21 37.291339187167424 39.0 36.0 41.0 31.0 41.0 22 37.24459158067839 39.0 36.0 40.0 31.0 41.0 23 37.13081073967234 39.0 36.0 40.0 31.0 41.0 24 37.04444023358876 39.0 36.0 40.0 31.0 41.0 25 36.96299703794736 39.0 36.0 40.0 31.0 41.0 26 36.714794208475745 39.0 35.0 40.0 30.0 41.0 27 36.54591577631948 38.0 35.0 40.0 30.0 41.0 28 36.39972021504204 38.0 35.0 40.0 30.0 41.0 29 36.26299907906149 38.0 35.0 40.0 30.0 41.0 30 36.0863921358005 38.0 35.0 40.0 30.0 41.0 31 35.850509410297754 38.0 34.0 40.0 29.0 41.0 32 35.59145577438804 38.0 34.0 40.0 28.0 41.0 33 35.76996400023031 38.0 34.0 40.0 29.0 41.0 34 35.768310393139906 38.0 34.0 40.0 29.0 41.0 35 35.68306219518474 38.0 34.0 40.0 28.0 41.0 36 35.61057979522446 38.0 34.0 40.0 27.0 41.0 37 35.479169516356485 38.0 34.0 40.0 27.0 41.0 38 35.36582675327896 38.0 34.0 40.0 27.0 41.0 39 35.324563955569516 38.0 34.0 40.0 26.0 41.0 40 35.180286432287865 38.0 34.0 40.0 25.0 41.0 41 35.05929131908067 38.0 34.0 40.0 25.0 41.0 42 34.863615495529196 38.0 33.0 40.0 24.0 41.0 43 34.554215190093224 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 2.0 14 9.0 15 18.0 16 22.0 17 102.0 18 249.0 19 489.0 20 1081.0 21 2286.0 22 4262.0 23 7423.0 24 12140.0 25 18974.0 26 28818.0 27 41540.0 28 58900.0 29 79388.0 30 101989.0 31 126436.0 32 155473.0 33 190260.0 34 229576.0 35 279901.0 36 351254.0 37 456439.0 38 588171.0 39 547317.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.572383238370755 22.797081877008555 13.89998723542058 22.730547649200112 2 17.656733955395868 23.30431397087787 36.17320346160771 22.86574861211855 3 19.96514264493662 26.314378491409503 31.96625398588463 21.75422487776925 4 13.258163466433267 16.109965480799666 35.88327386176661 34.74859719100045 5 11.43224978606382 40.36775393059176 34.90302118402289 13.296975099321529 6 31.531648997828192 36.626513585137765 15.616046325370043 16.225791091664 7 24.72032928349887 34.868748745247935 21.860758849676817 18.550163121576375 8 27.338530355175184 33.86034697112372 20.476121858778665 18.325000814922433 9 25.332633058554688 13.684451676013648 23.459956539501196 37.522958725930465 10 16.094002140428042 27.674948614190132 34.34808185537884 21.88296739000299 11 31.78002516967904 21.964581490872412 25.08486617450429 21.17052716494426 12 20.018303005525325 27.222034527730365 32.0859790386718 20.673683428072508 13 30.761052252217127 21.01186862170874 28.56240675992629 19.664672366147848 14 20.9515186650748 22.339872311555663 28.49989383160077 28.208715191768764 15 22.93097287115604 29.01297508835435 26.737376546867488 21.318675493622127 16 21.81524505098368 28.369353920355728 27.211554777562736 22.603846251097863 17 19.62979063957245 27.130214856203512 28.179743556857673 25.06025094736637 18 20.658359839891354 26.52570996499337 32.127441073491994 20.688489121623288 19 20.05202708527988 25.155330308625594 33.262483316938415 21.53015928915611 20 23.90936722110841 24.219098674463925 32.157570355223925 19.713963749203735 21 23.396864787765256 25.023480428609595 30.927144106618055 20.652510677007093 22 21.884460145114076 24.685021055463164 31.677146924574128 21.75337187484863 23 21.010680510497874 26.486410901864755 32.57018005368435 19.93272853395302 24 19.922096461835277 25.798037544923552 31.121659236909682 23.158206756331488 25 20.976133892212722 26.483181676522406 32.1856889872144 20.354995444050473 26 22.165189499168473 25.67313354583261 30.927205035398096 21.23447191960082 27 20.968761509827356 26.998334511797488 30.579423558904878 21.453480419470278 28 20.78963089649693 26.36759978077825 30.843732606737323 21.9990367159875 29 20.04511166874485 26.357089566220598 31.60430656803109 21.993492197003462 30 19.46537432662274 26.558337326707125 33.27713668853908 20.69915165813105 31 20.73461220811687 26.005104003904318 32.28634333184769 20.97394045613113 32 21.54328944125567 26.19331300546135 30.501647971178247 21.76174958210473 33 22.42325334704637 26.162879079829192 30.062412395838443 21.351455177285995 34 20.87822134268143 28.50257469792272 30.213180662058214 20.406023297337626 35 19.744153959715717 29.319111743687245 30.41790136300727 20.518832933589763 36 20.669844914929712 26.108073642179285 32.14431834556428 21.077763097326716 37 20.66366064375521 26.339846721468042 31.464657804169416 21.53183483060733 38 21.023780198207415 25.889979074010494 31.929788111028078 21.156452616754013 39 21.63730254886412 25.53119995271927 32.01670301576136 20.814794482655252 40 20.115910911156394 26.185239942105472 31.26663926902524 22.432209877712893 41 20.959378477700525 25.74018566827143 31.136160286560237 22.164275567467808 42 18.83613235071459 27.268553651294237 31.46520616318982 22.430107834801362 43 19.465161075892585 26.99949215861833 31.049946062797467 22.48540070269162 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 349.0 1 438.0 2 527.0 3 1398.0 4 2269.0 5 2269.0 6 3946.5 7 5624.0 8 5987.5 9 6351.0 10 9871.5 11 13392.0 12 13392.0 13 24272.0 14 35152.0 15 56179.5 16 77207.0 17 75919.5 18 74632.0 19 74632.0 20 79883.0 21 85134.0 22 70811.5 23 56489.0 24 62274.5 25 68060.0 26 68060.0 27 75960.0 28 83860.0 29 89184.0 30 94508.0 31 101688.5 32 108869.0 33 108869.0 34 118247.0 35 127625.0 36 138530.5 37 149436.0 38 154867.5 39 160299.0 40 160299.0 41 168385.5 42 176472.0 43 196871.0 44 217270.0 45 265391.5 46 313513.0 47 313513.0 48 320007.0 49 326501.0 50 297065.0 51 267629.0 52 249218.5 53 230808.0 54 230808.0 55 203001.5 56 175195.0 57 146318.5 58 117442.0 59 103523.0 60 89604.0 61 89604.0 62 79033.5 63 68463.0 64 59526.5 65 50590.0 66 42724.5 67 34859.0 68 34859.0 69 29568.0 70 24277.0 71 20356.0 72 16435.0 73 13257.5 74 10080.0 75 10080.0 76 8085.5 77 6091.0 78 4709.5 79 3328.0 80 2709.0 81 2090.0 82 2090.0 83 1547.5 84 1005.0 85 773.5 86 542.0 87 427.0 88 312.0 89 312.0 90 242.0 91 172.0 92 103.0 93 34.0 94 28.5 95 23.0 96 23.0 97 12.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3282521.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.34836288521367 #Duplication Level Percentage of deduplicated Percentage of total 1 72.25430519414282 29.87597231186395 2 14.116974079689395 11.674275341763046 3 5.499526171984136 6.821892115677901 4 2.6590555642338987 4.397903776075593 5 1.4518539481783124 3.001589195280353 6 0.8777662834906826 2.177651929090685 7 0.5807610153488917 1.6809462048561783 8 0.3940359114540206 1.3034191885285413 9 0.28536059220251336 1.0619273987576097 >10 1.614447208687644 12.67108351310005 >50 0.16022076563753368 4.63851824562546 >100 0.09262654804725522 7.121758754825716 >500 0.00601365948380002 1.6870165591724928 >1k 0.005790931354625742 4.776201589853532 >5k 6.681843870722011E-4 1.9344436079378624 >10k+ 5.939416773975121E-4 5.175400267590958 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 36817 1.1216074474466424 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36396 1.1087819392473042 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 31908 0.9720577568277553 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 18719 0.5702629168252084 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13227 0.4029524868233897 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10838 0.330173059060399 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10603 0.3230139274051864 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 10082 0.3071419802036301 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9584 0.29197071397258384 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8233 0.2508133230526172 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7405 0.22558880811425122 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7393 0.22522323543398504 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7382 0.22488812714374107 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6238 0.19003686495836586 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5872 0.17888689821024753 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5696 0.17352516556634368 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5212 0.158780400795608 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4540 0.13830833070070228 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4337 0.13212405952619952 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4214 0.12837693955347126 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3983 0.1213396654583474 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3740 0.1139368186829574 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3689 0.11238313479182616 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3538 0.1077830118984768 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3496 0.1065035075175452 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3358 0.10229942169448421 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3353 0.1021470997443733 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.046439002218112E-5 0.0 0.0 0.0 3.046439002218112E-5 7 3.046439002218112E-5 0.0 0.0 0.0 3.046439002218112E-5 8 6.092878004436224E-5 0.0 0.0 0.0 3.046439002218112E-5 9 6.092878004436224E-5 0.0 0.0 3.046439002218112E-5 3.046439002218112E-5 10 6.092878004436224E-5 0.0 0.0 1.8278634013308673E-4 3.046439002218112E-5 11 6.092878004436224E-5 0.0 0.0 3.046439002218112E-4 3.046439002218112E-5 12 6.092878004436224E-5 0.0 0.0 4.8743024035489795E-4 3.046439002218112E-5 13 1.2185756008872449E-4 0.0 0.0 5.178946303770791E-4 3.046439002218112E-5 14 1.523219501109056E-4 0.0 0.0 9.139317006654336E-4 3.046439002218112E-5 15 1.8278634013308673E-4 0.0 0.0 0.0016755414512199618 3.046439002218112E-5 16 1.8278634013308673E-4 0.0 0.0 0.0024066868117523085 3.046439002218112E-5 17 1.8278634013308673E-4 0.0 0.0 0.003747119972728278 3.046439002218112E-5 18 1.8278634013308673E-4 0.0 0.0 0.004173621433038814 3.046439002218112E-5 19 2.1325073015526785E-4 0.0 0.0 0.0048743024035489795 3.046439002218112E-5 20 2.1325073015526785E-4 0.0 0.0 0.005788234104214413 3.046439002218112E-5 21 2.1325073015526785E-4 0.0 0.0 0.007951205795789272 3.046439002218112E-5 22 2.1325073015526785E-4 0.0 0.0 0.013221545269626607 3.046439002218112E-5 23 2.1325073015526785E-4 0.0 0.0 0.022939685686702384 3.046439002218112E-5 24 2.1325073015526785E-4 0.0 0.0 0.03567380071597409 3.046439002218112E-5 25 2.1325073015526785E-4 0.0 0.0 0.04161435677029941 3.046439002218112E-5 26 2.1325073015526785E-4 0.0 0.0 0.0488953459856007 3.046439002218112E-5 27 2.1325073015526785E-4 0.0 0.0 0.11046387822042875 3.046439002218112E-5 28 2.1325073015526785E-4 0.0 0.0 0.17483513433729747 3.046439002218112E-5 29 2.1325073015526785E-4 0.0 0.0 0.2506305367124841 3.046439002218112E-5 30 2.4371512017744897E-4 0.0 0.0 0.4000888341613047 3.046439002218112E-5 31 2.741795101996301E-4 0.0 0.0 0.6321970217403027 3.046439002218112E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8910 0.0 27.324354 1 GTATTGG 1175 0.0 22.042553 1 ATTGGAC 1205 0.0 21.647303 3 TTGGACC 1880 0.0 19.385637 4 GGACCCT 1860 0.0 18.99731 6 TGGACCC 1885 0.0 18.647215 5 TATTGGA 1465 0.0 17.93174 2 CTAGTAC 340 0.0 16.867647 3 GACCCTC 2055 0.0 16.834549 7 CGTCTGT 845 0.0 16.420118 34 GTATCAA 15025 0.0 16.326788 2 GTACCGT 95 7.06606E-5 15.578948 6 AAGACCG 190 2.7284841E-11 15.578948 5 CGAATTA 170 1.4897523E-9 15.235294 15 TAGGTCG 110 1.4534218E-5 15.136364 21 CGCGAAT 75 0.0041065635 14.8 35 TTTTTAC 2075 0.0 14.8 1 ACCCTCG 2295 0.0 14.751635 8 TAGTACT 440 0.0 14.295454 4 AACCGTT 120 3.304028E-5 13.875001 7 >>END_MODULE