##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088207_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3252147 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.178274536790617 31.0 31.0 34.0 30.0 34.0 2 31.335404580420256 31.0 31.0 34.0 30.0 34.0 3 31.379397979242636 31.0 31.0 34.0 28.0 34.0 4 35.32051810696134 37.0 35.0 37.0 33.0 37.0 5 35.21030168685487 37.0 35.0 37.0 32.0 37.0 6 35.26676377174832 37.0 35.0 37.0 32.0 37.0 7 35.1040807810963 37.0 35.0 37.0 32.0 37.0 8 35.17279108232192 37.0 35.0 37.0 32.0 37.0 9 36.66466214473085 39.0 35.0 39.0 32.0 39.0 10 36.538320069787744 38.0 35.0 39.0 32.0 39.0 11 36.56622963230137 39.0 35.0 39.0 32.0 39.0 12 36.42038136652494 38.0 35.0 39.0 32.0 39.0 13 36.45400961272661 38.0 35.0 39.0 32.0 39.0 14 37.39699619974128 39.0 36.0 41.0 32.0 41.0 15 37.446846959869895 39.0 36.0 41.0 32.0 41.0 16 37.418884201728886 39.0 36.0 41.0 32.0 41.0 17 37.53116264424702 39.0 36.0 41.0 32.0 41.0 18 37.542473326082735 39.0 36.0 41.0 32.0 41.0 19 37.64318464079268 39.0 37.0 41.0 32.0 41.0 20 37.61482798901772 39.0 36.0 41.0 32.0 41.0 21 37.48792566879664 39.0 36.0 41.0 32.0 41.0 22 37.44646382835708 39.0 36.0 41.0 32.0 41.0 23 37.32822747557229 39.0 36.0 41.0 32.0 41.0 24 37.229372473015516 39.0 36.0 41.0 31.0 41.0 25 37.15963546543253 39.0 36.0 41.0 31.0 41.0 26 36.905176180535506 39.0 35.0 40.0 31.0 41.0 27 36.740534483834836 39.0 35.0 40.0 30.0 41.0 28 36.59915311331253 38.0 35.0 40.0 30.0 41.0 29 36.45824681356655 38.0 35.0 40.0 30.0 41.0 30 36.26822803520259 38.0 35.0 40.0 30.0 41.0 31 35.999414540609635 38.0 35.0 40.0 30.0 41.0 32 35.721620517153745 38.0 34.0 40.0 29.0 41.0 33 35.84864460308836 38.0 35.0 40.0 30.0 41.0 34 35.82166427286344 38.0 35.0 40.0 29.0 41.0 35 35.71828671951176 38.0 35.0 40.0 29.0 41.0 36 35.621728046118456 38.0 34.0 40.0 28.0 41.0 37 35.47108356418083 38.0 34.0 40.0 27.0 41.0 38 35.34290608634849 38.0 34.0 40.0 26.0 41.0 39 35.26324394315509 38.0 34.0 40.0 25.0 41.0 40 35.07472755690318 38.0 34.0 40.0 25.0 41.0 41 34.92240387657753 38.0 34.0 40.0 24.0 41.0 42 34.67832235135742 38.0 33.0 40.0 23.0 41.0 43 34.363547527218174 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 5.0 14 7.0 15 13.0 16 31.0 17 90.0 18 191.0 19 491.0 20 983.0 21 2098.0 22 3784.0 23 6699.0 24 10873.0 25 17873.0 26 26981.0 27 39391.0 28 55844.0 29 76036.0 30 97677.0 31 120924.0 32 148288.0 33 182631.0 34 223887.0 35 273047.0 36 345888.0 37 460424.0 38 572389.0 39 585601.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.90005771571826 22.909450280076516 14.071996130556213 22.118495873649007 2 17.283136340392975 22.924117513753224 37.214676950334656 22.578069195519145 3 19.88025141544955 26.427372440421664 32.474085581002335 21.218290563126452 4 12.568650802070138 15.464983593915035 35.54344253196427 36.42292307205056 5 10.9050728641725 40.88877286297329 34.7505509437304 13.455603329123806 6 31.33287025463486 35.85173117943315 15.543916065294711 17.271482500637273 7 24.273687505515586 35.692144297290376 21.349742185700705 18.68442601149333 8 27.86343913728377 33.46623015503297 20.26611958192542 18.404211125757847 9 25.110273305603958 13.63652996005408 24.347423409827414 36.90577332451455 10 16.290284541258437 27.70791111225907 33.74257067715574 22.259233669326754 11 30.845991893970353 21.652557525843697 25.897722335429485 21.603728244756464 12 20.24668626602672 27.223953898762883 32.23359829675596 20.295761538454443 13 31.267959289663104 20.7783965484955 29.385233816306584 18.56841034553481 14 20.768649141628593 22.582773779906013 28.91154674127584 27.737030337189555 15 22.678771900532173 28.882120027169744 27.725007510423115 20.71410056187497 16 21.428213423316965 28.63591344425698 27.626026744793514 22.30984638763254 17 18.98825606591584 26.94659866236059 28.333251848701796 25.73189342302178 18 20.216060344135737 26.39619303801458 33.206371052723014 20.181375565126668 19 19.21383012514502 24.61687617441647 34.757346454511435 21.411947245927077 20 24.37528192913789 23.311922862035452 33.21574947257919 19.09704573624747 21 23.605298284487137 24.505749586350188 31.834477346811198 20.054474782351477 22 21.606065162491117 24.057799355318192 32.8644738383597 21.471661643830984 23 20.52853084439295 26.212775744761846 34.1827721809623 19.075921229882905 24 19.036654862157214 25.28960099282105 32.29792503229405 23.375819112727683 25 20.377492161332192 26.33094383494965 33.6134867212337 19.678077282484463 26 22.01954585693697 25.138777552183218 31.99477145405789 20.84690513682192 27 20.476165437786175 26.88740699605522 31.542085889721466 21.094341676437132 28 20.200747383190244 26.129384680335793 31.683930646431417 21.98593729004255 29 19.087698065308857 26.18611643323626 32.799747366893314 21.926438134561568 30 18.505682553709903 26.282114553862417 35.04813896788798 20.164063924539697 31 20.074892063612133 25.76620921502011 33.6046002840585 20.55429843730926 32 21.43131906399065 25.92410490669702 31.25240033737712 21.392175691935204 33 22.43318029597063 25.874506902670756 30.689203163325647 21.003109638032967 34 20.377153923239018 29.089705969625605 30.739293150032886 19.79384695710249 35 18.96494838640443 30.195375547292297 30.9162224216802 19.923453644623077 36 19.969638518800043 25.9979638066791 33.49876250981275 20.533635164708112 37 20.10487225823433 26.398314713326304 32.37605803181714 21.12075499662223 38 20.443879074346885 25.79028561747055 33.08555855562494 20.68027675255762 39 21.519506959556256 25.20627142623012 32.98507109303485 20.28915052117878 40 19.60692428724778 26.25010493068118 31.805112130540223 22.33785865153082 41 20.833929093611083 25.660648181032407 31.642788594734494 21.862634130622016 42 18.010963219067282 27.705205207513682 32.10030173912803 22.183529834291008 43 18.786143430785877 27.460167083468246 31.55755259525477 22.196136890491115 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 257.0 1 360.5 2 464.0 3 1463.5 4 2463.0 5 2463.0 6 4419.5 7 6376.0 8 6917.0 9 7458.0 10 11378.0 11 15298.0 12 15298.0 13 28034.0 14 40770.0 15 65787.0 16 90804.0 17 89578.0 18 88352.0 19 88352.0 20 93291.5 21 98231.0 22 79394.5 23 60558.0 24 65681.5 25 70805.0 26 70805.0 27 76204.5 28 81604.0 29 84790.5 30 87977.0 31 93688.5 32 99400.0 33 99400.0 34 107272.0 35 115144.0 36 125001.0 37 134858.0 38 140095.5 39 145333.0 40 145333.0 41 153224.0 42 161115.0 43 186214.5 44 211314.0 45 275565.0 46 339816.0 47 339816.0 48 343791.0 49 347766.0 50 313878.5 51 279991.0 52 259074.0 53 238157.0 54 238157.0 55 203183.0 56 168209.0 57 135115.5 58 102022.0 59 88294.0 60 74566.0 61 74566.0 62 65230.5 63 55895.0 64 48987.5 65 42080.0 66 35709.0 67 29338.0 68 29338.0 69 25027.0 70 20716.0 71 17688.5 72 14661.0 73 11778.0 74 8895.0 75 8895.0 76 6941.5 77 4988.0 78 3897.0 79 2806.0 80 2233.5 81 1661.0 82 1661.0 83 1250.5 84 840.0 85 671.0 86 502.0 87 434.0 88 366.0 89 366.0 90 290.0 91 214.0 92 133.5 93 53.0 94 36.0 95 19.0 96 19.0 97 11.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3252147.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.32869745342749 #Duplication Level Percentage of deduplicated Percentage of total 1 70.93004582441952 25.767961751130848 2 14.092718050356082 10.239401806956852 3 5.835044837939991 6.359387356341173 4 2.8361179808622152 4.121298882758763 5 1.6280613392060352 2.9572673913819023 6 1.0209775070368738 2.2254469775938337 7 0.6483326605042277 1.6487156750843661 8 0.4623365118141495 1.3436866607495392 9 0.33836291743172836 1.1063055651152696 >10 1.8783759834245881 12.78219271819174 >50 0.18861600878785964 4.764092777959435 >100 0.12029674614417092 8.038580107473738 >500 0.010910884383977642 2.6672847678234293 >1k 0.00809792200371727 6.381069964553165 >5k 8.524128424965547E-4 2.3645509040249735 >10k+ 8.524128424965547E-4 7.232756692860967 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 45153 1.388405874642198 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 43116 1.3257703295699732 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 39548 1.2160581917115063 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 25993 0.7992566141690397 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16015 0.49244391474309124 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 14039 0.43168405364210166 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 13382 0.41148201480437385 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 13153 0.40444051268285225 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 12786 0.39315565993788104 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 10378 0.3191122664504403 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 9974 0.30668970375570354 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 9932 0.3053982492181319 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 9824 0.30207736612151914 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 8544 0.2627187516431453 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 7767 0.23882684269806992 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 7607 0.2339070158882732 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 6713 0.20641748358853398 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5489 0.168780808493589 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 5261 0.16177005528962865 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5246 0.1613088215262102 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4884 0.15017771336904512 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4765 0.1465185921792588 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4732 0.14550387789973823 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 4576 0.14070704676018642 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4465 0.13729391691088996 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3914 0.12035126333465246 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3867 0.11890606420927466 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 3604 0.1108190988906713 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3592 0.11045011187993654 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3526 0.1084206833208954 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 3466 0.10657574826722163 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 3370 0.10362385218134358 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 3276 0.10073345393058801 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 3.074891756122955E-5 0.0 7 0.0 0.0 0.0 3.074891756122955E-5 0.0 8 0.0 0.0 0.0 3.074891756122955E-5 0.0 9 0.0 0.0 0.0 6.14978351224591E-5 0.0 10 0.0 0.0 0.0 1.229956702449182E-4 0.0 11 0.0 0.0 0.0 2.459913404898364E-4 0.0 12 0.0 0.0 0.0 7.072251039082797E-4 0.0 13 0.0 0.0 0.0 7.994718565919683E-4 0.0 14 0.0 0.0 0.0 9.532164443981161E-4 0.0 15 0.0 0.0 0.0 0.0014759480429390184 0.0 16 0.0 0.0 0.0 0.0026444069102657414 0.0 17 0.0 0.0 0.0 0.004274099541010908 0.0 18 0.0 0.0 0.0 0.004858328974674269 0.0 19 0.0 0.0 0.0 0.005596302996143779 0.0 20 3.074891756122955E-5 0.0 0.0 0.007287493462011404 0.0 21 3.074891756122955E-5 0.0 0.0 0.010208640630328211 0.0 22 3.074891756122955E-5 0.0 0.0 0.016942653576237483 0.0 23 3.074891756122955E-5 0.0 0.0 0.02927296951829053 0.0 24 3.074891756122955E-5 0.0 0.0 0.044985666392078835 0.0 25 3.074891756122955E-5 0.0 0.0 0.05153518583262073 0.0 26 3.074891756122955E-5 0.0 0.0 0.05952990439854041 0.0 27 3.074891756122955E-5 0.0 0.0 0.12859197324106197 0.0 28 3.074891756122955E-5 0.0 0.0 0.2030966004919212 0.0 29 3.074891756122955E-5 0.0 0.0 0.28943956100385376 0.0 30 3.074891756122955E-5 0.0 0.0 0.4670760577550769 0.0 31 3.074891756122955E-5 0.0 0.0 0.71623453675372 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9805 0.0 29.90566 1 GTATTGG 1330 0.0 23.090227 1 ATTGGAC 1255 0.0 22.848606 3 TTGGACC 2085 0.0 20.052757 4 GGACCCT 2035 0.0 19.454546 6 TGGACCC 2130 0.0 18.847418 5 TAGTGCG 90 2.1546803E-6 18.5 7 CGTCTGT 1015 0.0 18.2266 34 TATTGGA 1660 0.0 17.942772 2 CGACGAG 185 1.8189894E-12 17.000002 24 GACCCTC 2340 0.0 16.918802 7 CAATGCG 165 5.4569682E-11 16.818182 19 GTATCAA 17575 0.0 16.71579 2 TCTATAC 255 0.0 16.686275 3 TGCGACG 200 0.0 16.65 22 TCACGTT 180 1.0913936E-11 16.444445 24 TGAACCG 115 1.2438286E-6 16.086956 5 CGCGCTT 70 0.0025938614 15.857142 17 ATCACGT 195 4.1836756E-11 15.179487 23 TGCGTTA 185 3.0559022E-10 15.000001 37 >>END_MODULE