##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088200_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2866447 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.09834160547884 31.0 31.0 33.0 30.0 34.0 2 31.2477118886203 31.0 31.0 34.0 28.0 34.0 3 31.30878087053415 31.0 31.0 34.0 28.0 34.0 4 35.26541533822185 37.0 35.0 37.0 33.0 37.0 5 35.121205450510686 37.0 35.0 37.0 32.0 37.0 6 35.16817788711949 37.0 35.0 37.0 32.0 37.0 7 35.01400828272771 37.0 35.0 37.0 32.0 37.0 8 35.071343373870164 37.0 35.0 37.0 32.0 37.0 9 36.578551775072064 39.0 35.0 39.0 32.0 39.0 10 36.42963257300763 38.0 35.0 39.0 32.0 39.0 11 36.45391943405896 38.0 35.0 39.0 32.0 39.0 12 36.296427947211306 38.0 35.0 39.0 32.0 39.0 13 36.36429419417139 38.0 35.0 39.0 32.0 39.0 14 37.30825548143747 39.0 36.0 41.0 32.0 41.0 15 37.363819041482365 39.0 36.0 41.0 32.0 41.0 16 37.33483472745179 39.0 36.0 41.0 32.0 41.0 17 37.407078868020236 39.0 36.0 41.0 32.0 41.0 18 37.411688756150035 39.0 36.0 41.0 32.0 41.0 19 37.499552581994365 39.0 36.0 41.0 32.0 41.0 20 37.45445773112149 39.0 36.0 41.0 32.0 41.0 21 37.33640949928605 39.0 36.0 41.0 31.0 41.0 22 37.2915822270567 39.0 36.0 41.0 31.0 41.0 23 37.198868494690466 39.0 36.0 40.0 31.0 41.0 24 37.11018658290211 39.0 36.0 40.0 31.0 41.0 25 37.02391497208914 39.0 36.0 40.0 31.0 41.0 26 36.77526359287299 39.0 35.0 40.0 30.0 41.0 27 36.62239036688974 38.0 35.0 40.0 30.0 41.0 28 36.481679584516996 38.0 35.0 40.0 30.0 41.0 29 36.35194894585527 38.0 35.0 40.0 30.0 41.0 30 36.17747755322181 38.0 35.0 40.0 30.0 41.0 31 35.954038571095154 38.0 35.0 40.0 29.0 41.0 32 35.68441872464413 38.0 34.0 40.0 28.0 41.0 33 35.84678628280935 38.0 34.0 40.0 29.0 41.0 34 35.84143819857824 38.0 35.0 40.0 29.0 41.0 35 35.7441826065509 38.0 34.0 40.0 28.0 41.0 36 35.67159483499957 38.0 34.0 40.0 28.0 41.0 37 35.53804588049247 38.0 34.0 40.0 27.0 41.0 38 35.42554423647115 38.0 34.0 40.0 27.0 41.0 39 35.37950221999569 38.0 34.0 40.0 26.0 41.0 40 35.23936078357632 38.0 34.0 40.0 25.0 41.0 41 35.12671680306666 38.0 34.0 40.0 25.0 41.0 42 34.9464532224039 38.0 34.0 40.0 24.0 41.0 43 34.63546508970862 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 1.0 14 1.0 15 18.0 16 30.0 17 87.0 18 192.0 19 426.0 20 884.0 21 1828.0 22 3537.0 23 6033.0 24 10083.0 25 15967.0 26 24713.0 27 36033.0 28 50745.0 29 68827.0 30 89041.0 31 109546.0 32 133866.0 33 163232.0 34 199341.0 35 241645.0 36 301597.0 37 391173.0 38 501724.0 39 515875.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.79876585891872 22.604987986870157 13.632032966247065 22.964213187964056 2 17.425125948604666 22.93431554813328 36.69420714912921 22.946351354132837 3 19.576988515747892 26.348472516673084 32.0733995779444 22.001139389634623 4 12.862125132611906 15.773743592677626 36.191110458347914 35.17302081636255 5 11.119479969453474 40.608983874462005 35.21258198738717 13.058954168697346 6 31.390672843419047 36.67735702072984 15.701458983891905 16.230511151959202 7 24.735709399127213 35.00015873309362 21.87956030584204 18.38457156193713 8 27.34768861939537 33.90524925107633 20.419285617351377 18.32777651217692 9 25.327557076757394 13.691549154754998 23.556130638382637 37.42476313010497 10 16.047741332737008 27.650467634671077 34.19396904948879 22.107821983103122 11 31.613143379242665 21.98125414493971 25.238317680389695 21.16728479542793 12 19.99259012987158 27.392971159069052 32.01936055332612 20.595078157733248 13 30.511675255115478 21.127514306038105 28.61511132073958 19.74569911810684 14 20.72112269998364 22.38084290412486 28.64581134763699 28.25222304825451 15 22.804677707280128 29.092008329475476 26.94506474391468 21.158249219329715 16 21.76133031589281 28.392954762463773 27.197572465145875 22.64814245649754 17 19.422616221405804 27.332722356282886 28.313518442866727 24.931142979444587 18 20.464568157025056 26.826171912475623 32.100122555902836 20.609137374596497 19 19.99238081150637 25.175138420490594 33.28946950702385 21.543011260979185 20 23.84596680140955 24.305176408285238 32.18894331554011 19.6599134747651 21 23.282586421447878 25.178661946304953 30.890087973020258 20.64866365922691 22 21.75260871734241 24.82107640573853 31.861953142688492 21.564361734230562 23 20.97397928515685 26.506612541588943 32.75347494651044 19.76593322674377 24 19.84090408788301 25.913474067373304 31.232567704897384 23.013054139846297 25 20.709959053839125 26.705290556567068 32.35653755328461 20.2282128363092 26 22.05786466660643 25.812931479284284 31.030331277710697 21.098872576398588 27 20.786813780265256 27.21728327786978 30.605205677969977 21.39069726389499 28 20.68260812078507 26.395987785575663 30.9737804327099 21.947623660929366 29 19.974239886521534 26.47716842488279 31.71099971497816 21.837591973617513 30 19.3071073702043 26.601259329057893 33.53304631133944 20.55858698939837 31 20.56716904237197 26.103186279041612 32.50319995450815 20.826444724078275 32 21.340077105908463 26.261535622322686 30.743913981315547 21.654473290453303 33 22.1834556857322 26.178924640853296 30.386154008778117 21.251465664636395 34 20.792290944154907 28.529534995763044 30.26590060796519 20.412273452116857 35 19.554765882641473 29.428766692703544 30.41500505678284 20.60146236787214 36 20.726739409450097 26.02594780227927 32.282369079211996 20.964943709058637 37 20.554644826853593 26.226021273025456 31.631249417833295 21.588084482287652 38 20.75796273226053 25.824269557399802 32.28359010300906 21.13417760733061 39 21.413338533731828 25.463265150201625 32.16225522397588 20.961141092090664 40 19.811704175936274 26.24088287695534 31.577035961244004 22.370376985864382 41 20.702109615143765 25.764613823315063 31.3612636131071 22.172012948434073 42 18.660557826466004 27.383098309509997 31.50370476063224 22.45263910339176 43 19.183330443577013 27.015709692172923 31.3329707474096 22.467989116840464 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 183.0 1 276.0 2 369.0 3 1178.5 4 1988.0 5 1988.0 6 3508.0 7 5028.0 8 5317.0 9 5606.0 10 8684.0 11 11762.0 12 11762.0 13 20900.5 14 30039.0 15 48172.5 16 66306.0 17 65499.0 18 64692.0 19 64692.0 20 69051.5 21 73411.0 22 61089.0 23 48767.0 24 53891.5 25 59016.0 26 59016.0 27 64508.5 28 70001.0 29 75219.5 30 80438.0 31 87591.0 32 94744.0 33 94744.0 34 104225.5 35 113707.0 36 126102.5 37 138498.0 38 143657.0 39 148816.0 40 148816.0 41 155084.5 42 161353.0 43 180432.0 44 199511.0 45 239924.0 46 280337.0 47 280337.0 48 283264.0 49 286191.0 50 259233.5 51 232276.0 52 214916.0 53 197556.0 54 197556.0 55 172557.0 56 147558.0 57 122136.5 58 96715.0 59 85118.5 60 73522.0 61 73522.0 62 64864.5 63 56207.0 64 48614.5 65 41022.0 66 35096.5 67 29171.0 68 29171.0 69 24550.5 70 19930.0 71 16576.0 72 13222.0 73 10722.5 74 8223.0 75 8223.0 76 6359.5 77 4496.0 78 3561.5 79 2627.0 80 2053.0 81 1479.0 82 1479.0 83 1124.0 84 769.0 85 613.5 86 458.0 87 362.5 88 267.0 89 267.0 90 205.5 91 144.0 92 85.0 93 26.0 94 19.0 95 12.0 96 12.0 97 8.0 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2866447.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.07409385200614 #Duplication Level Percentage of deduplicated Percentage of total 1 73.9532143322833 31.11514480474013 2 13.919109772603989 11.712678618178323 3 5.008741833690327 6.322148219734684 4 2.3244580509884196 3.911978647693522 5 1.2395830739313813 2.60771672949736 6 0.7605467997779883 1.9199590459621205 7 0.4806837605500468 1.4157033558162542 8 0.3430634874442975 1.1547268294342323 9 0.24426409294294807 0.9249471334041073 >10 1.432455056118882 11.756728993216758 >50 0.16942342342438174 4.998364183540046 >100 0.11082640474209594 8.76711104325107 >500 0.006438669850633639 1.8323827503378267 >1k 0.005853336227846913 4.6508810491110495 >5k 9.198099786616577E-4 2.7316340050389893 >10k+ 4.1809544484620805E-4 4.17789459104343 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 31520 1.099619145234501 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 31005 1.081652652220676 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 27822 0.9706092594769763 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 17074 0.5956502945981559 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11330 0.39526284630415287 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9264 0.32318755588364273 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9126 0.3183732334838216 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8701 0.30354651594814064 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 8618 0.30065094522940766 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 6993 0.24396055465180413 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6580 0.22955247384654243 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6476 0.22592428884957583 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6378 0.2225054222178188 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5406 0.18859584705386145 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5088 0.17750197369775195 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5013 0.1748854941326318 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4496 0.15684922833040346 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3843 0.13406841291675722 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3817 0.13316136666751557 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3555 0.1240211313866958 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3461 0.12074181033174519 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3197 0.11153180226252221 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3152 0.10996191452345011 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3014 0.10514759212362901 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2999 0.10462429621060497 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 3.488639420160219E-5 0.0 0.0 0.0 0.0 3 3.488639420160219E-5 0.0 0.0 0.0 0.0 4 3.488639420160219E-5 0.0 0.0 0.0 0.0 5 3.488639420160219E-5 3.488639420160219E-5 0.0 1.0465918260480658E-4 0.0 6 3.488639420160219E-5 3.488639420160219E-5 0.0 1.0465918260480658E-4 0.0 7 3.488639420160219E-5 3.488639420160219E-5 0.0 1.0465918260480658E-4 0.0 8 3.488639420160219E-5 3.488639420160219E-5 0.0 1.0465918260480658E-4 0.0 9 3.488639420160219E-5 3.488639420160219E-5 0.0 1.3954557680640877E-4 0.0 10 3.488639420160219E-5 3.488639420160219E-5 0.0 2.4420475941121537E-4 0.0 11 3.488639420160219E-5 3.488639420160219E-5 0.0 4.884095188224307E-4 0.0 12 3.488639420160219E-5 3.488639420160219E-5 0.0 6.977278840320438E-4 0.0 13 3.488639420160219E-5 3.488639420160219E-5 0.0 9.07046249241657E-4 0.0 14 3.488639420160219E-5 3.488639420160219E-5 0.0 0.0012907965854592812 0.0 15 3.488639420160219E-5 3.488639420160219E-5 0.0 0.0017792061042817117 0.0 16 3.488639420160219E-5 6.977278840320438E-5 0.0 0.0030002299013377884 0.0 17 3.488639420160219E-5 6.977278840320438E-5 0.0 0.0041165945157890585 0.0 18 3.488639420160219E-5 6.977278840320438E-5 0.0 0.004570117640409887 0.0 19 3.488639420160219E-5 6.977278840320438E-5 0.0 0.005302731918643533 0.0 20 3.488639420160219E-5 6.977278840320438E-5 0.0 0.006628414898304417 0.0 21 3.488639420160219E-5 1.0465918260480658E-4 0.0 0.009907735953255023 0.0 22 3.488639420160219E-5 1.0465918260480658E-4 0.0 0.017547856283405903 0.0 23 3.488639420160219E-5 1.7443197100801096E-4 0.0 0.028048660938088162 0.0 24 3.488639420160219E-5 1.7443197100801096E-4 0.0 0.04343356078099473 0.0 25 3.488639420160219E-5 1.7443197100801096E-4 0.0 0.05058527159232318 0.0 26 3.488639420160219E-5 1.7443197100801096E-4 0.0 0.05948130211373174 0.0 27 3.488639420160219E-5 2.0931836520961315E-4 0.0 0.13012625037197617 0.0 28 3.488639420160219E-5 2.0931836520961315E-4 0.0 0.20610881694306576 0.0 29 3.488639420160219E-5 2.0931836520961315E-4 0.0 0.28871979841245976 0.0 30 3.488639420160219E-5 2.0931836520961315E-4 0.0 0.4488483477978138 0.0 31 3.488639420160219E-5 2.0931836520961315E-4 0.0 0.6898784453366834 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7120 0.0 29.72472 1 GTATTGG 1155 0.0 20.021645 1 ACGTTTA 150 1.2732926E-11 18.5 26 GGACCCT 1735 0.0 17.59366 6 CGCACTA 75 2.0686245E-4 17.266666 19 CGAACTA 215 0.0 17.209303 24 ATTGGAC 1305 0.0 17.153257 3 CGTCTGT 790 0.0 17.094936 34 TGGACCC 1835 0.0 16.93733 5 GTATCAA 12650 0.0 16.788935 2 TTGGACC 1930 0.0 16.199482 4 GACCCTC 1875 0.0 15.589333 7 GTACCGT 110 1.453295E-5 15.136364 6 CACGGTA 75 0.0041063954 14.8 32 ACGGACC 155 1.2120472E-7 14.32258 8 TATTGGA 1565 0.0 14.303513 2 TATATCG 80 0.0063016503 13.875 5 TGCGTCT 865 0.0 13.6878605 32 TCACGTT 190 7.1395334E-9 13.631579 24 AAGACCG 140 9.569923E-6 13.214286 5 >>END_MODULE