##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088189_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3319104 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.529193420875032 31.0 31.0 33.0 28.0 34.0 2 30.932778846339254 31.0 31.0 34.0 28.0 34.0 3 31.126244311717862 31.0 31.0 34.0 28.0 34.0 4 35.164648350880235 35.0 35.0 37.0 33.0 37.0 5 35.02779364551397 35.0 35.0 37.0 32.0 37.0 6 35.06776859055938 37.0 35.0 37.0 32.0 37.0 7 34.88141167013748 36.0 35.0 37.0 32.0 37.0 8 35.001492270203045 37.0 35.0 37.0 32.0 37.0 9 36.48413035566225 38.0 35.0 39.0 32.0 39.0 10 36.36265992267793 38.0 35.0 39.0 32.0 39.0 11 36.39861812103508 38.0 35.0 39.0 32.0 39.0 12 36.23277727965137 38.0 35.0 39.0 32.0 39.0 13 36.29911717138119 38.0 35.0 39.0 32.0 39.0 14 37.19186774502998 39.0 36.0 41.0 31.0 41.0 15 37.25990809567883 39.0 36.0 41.0 32.0 41.0 16 37.22329038198261 39.0 36.0 41.0 32.0 41.0 17 37.33288742986059 39.0 36.0 41.0 32.0 41.0 18 37.34757934671526 39.0 36.0 41.0 32.0 41.0 19 37.45518670098918 39.0 36.0 41.0 32.0 41.0 20 37.4239867144868 39.0 36.0 41.0 32.0 41.0 21 37.32739046441449 39.0 36.0 41.0 31.0 41.0 22 37.27001835435105 39.0 36.0 41.0 31.0 41.0 23 37.150845830682016 39.0 36.0 40.0 31.0 41.0 24 37.07886284973294 39.0 36.0 40.0 31.0 41.0 25 36.98937665104799 39.0 36.0 40.0 31.0 41.0 26 36.70787326941247 38.0 35.0 40.0 30.0 41.0 27 36.56185434382291 38.0 35.0 40.0 30.0 41.0 28 36.41929719586973 38.0 35.0 40.0 30.0 41.0 29 36.29407183384431 38.0 35.0 40.0 30.0 41.0 30 36.10889203833324 38.0 35.0 40.0 30.0 41.0 31 35.8378713050269 38.0 34.0 40.0 29.0 41.0 32 35.51981769778832 38.0 34.0 40.0 27.0 41.0 33 35.647581696747075 38.0 34.0 40.0 29.0 41.0 34 35.61404794787991 38.0 34.0 40.0 28.0 41.0 35 35.507954556410404 38.0 34.0 40.0 27.0 41.0 36 35.395070476851586 38.0 34.0 40.0 27.0 41.0 37 35.255005266481554 38.0 34.0 40.0 26.0 41.0 38 35.116950538458575 38.0 34.0 40.0 25.0 41.0 39 35.04993666965542 38.0 34.0 40.0 25.0 41.0 40 34.861177896203316 38.0 33.0 40.0 24.0 41.0 41 34.707493347602245 38.0 33.0 40.0 23.0 41.0 42 34.49103342347814 38.0 33.0 40.0 23.0 41.0 43 34.14006942837585 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 6.0 15 10.0 16 36.0 17 98.0 18 242.0 19 554.0 20 1210.0 21 2426.0 22 4375.0 23 7635.0 24 12812.0 25 20312.0 26 30391.0 27 45001.0 28 62763.0 29 84843.0 30 108395.0 31 133015.0 32 162787.0 33 198086.0 34 240925.0 35 289385.0 36 357052.0 37 459737.0 38 550639.0 39 546367.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.88609576560421 24.25612454445537 14.056082605426043 21.801697084514373 2 17.28888278282332 23.147662742716108 37.052258681861126 22.511195792599448 3 19.90739066928906 26.36868263242128 32.4743665760398 21.24956012224986 4 12.618977892828909 15.626928231233489 35.40497676481363 36.34911711112397 5 10.758475781415708 41.077742667900736 34.76161036231465 13.402171188368909 6 31.232645918898594 35.89300003856463 15.600866980968359 17.273487061568424 7 24.123468261313896 35.697344825591486 21.453078903222075 18.726108009872544 8 27.651438460500184 33.669086596864695 20.34934729372746 18.330127648907656 9 24.976228524324636 13.682578189776518 24.4244531054164 36.91674018048244 10 16.15767387825148 27.82356322670215 33.86929123040435 22.14947166464202 11 30.827446202348586 21.745898893195275 25.821336119627464 21.605318784828675 12 20.102111895258478 27.48398362931683 32.22104519774011 20.19285927768458 13 31.196009525462294 20.8295371280924 29.504950733691988 18.46950261275332 14 20.654459757814156 22.66105551377721 29.1277404986406 27.556744229768032 15 22.801033049883344 28.889061626270223 27.823894641445403 20.486010682401034 16 21.261641696072193 28.648364136827286 27.805636701953297 22.28435746514722 17 18.788353724378627 27.144614932222673 28.539660101039317 25.527371242359383 18 19.91112661730395 26.43945474441295 33.446345760783636 20.20307287749947 19 19.1928604828291 24.707752453674246 34.94632888876034 21.153058174736312 20 24.124733663060873 23.355911715932976 33.59494008021442 18.92441454079173 21 23.28884542334317 24.52170826825553 32.19573716280056 19.99370914560074 22 21.495620504810937 24.055799396463623 33.07727025124853 21.371309847476912 23 20.43147789282891 26.24178091436725 34.27412940359808 19.052611789205763 24 18.87307538420007 25.293000761651335 32.578581448487306 23.255342405661285 25 20.1453765835599 26.486123965986003 33.91562903723415 19.45287041321995 26 21.794918146584138 25.173450425174988 32.30670084456528 20.724930583675594 27 20.33603044677118 26.841490956595514 31.763964009564027 21.058514587069283 28 19.99675213551609 26.11879591600625 32.046238984979084 21.83821296349858 29 19.03170253176761 26.147839898960683 33.01375913499547 21.80669843427624 30 18.30246958215229 26.295108559418445 35.36837049999036 20.034051358438905 31 20.004163774319817 25.69030678158925 33.87857084321551 20.426958600875416 32 21.263389155627543 25.94974426833266 31.538662241375988 21.24820433466381 33 22.27718685524768 25.866860453905634 30.998245309577527 20.85770738126916 34 20.197499084090165 28.960074767166077 31.104207641580377 19.73821850716338 35 18.725384923159986 30.024187250535086 31.227855469427894 20.022572356877035 36 19.924473592873255 25.92687665104799 33.63965094194096 20.50899881413779 37 20.045108559418445 26.328551319874276 32.52504290314494 21.101297217562333 38 20.397161402595398 25.840106245540966 33.1947718420393 20.56796050982434 39 21.400896145465765 25.268686970941555 32.98914405815545 20.341272825437226 40 19.456033917587398 26.292246341181237 31.916655820365982 22.335063920865387 41 20.669915736295096 25.762976996201388 31.734287325736105 21.83281994176742 42 17.870997715045988 27.676384952083456 32.22089455467499 22.23172277819556 43 18.751898102620466 27.396249108193054 31.70638823007655 22.14546455910993 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 226.0 1 341.0 2 456.0 3 1417.5 4 2379.0 5 2379.0 6 4204.0 7 6029.0 8 6716.5 9 7404.0 10 11354.5 11 15305.0 12 15305.0 13 27892.5 14 40480.0 15 67506.0 16 94532.0 17 92325.0 18 90118.0 19 90118.0 20 94762.5 21 99407.0 22 79703.0 23 59999.0 24 64677.0 25 69355.0 26 69355.0 27 75432.5 28 81510.0 29 85337.5 30 89165.0 31 95801.0 32 102437.0 33 102437.0 34 112081.5 35 121726.0 36 132020.0 37 142314.0 38 149218.5 39 156123.0 40 156123.0 41 163702.0 42 171281.0 43 199239.5 44 227198.0 45 291420.5 46 355643.0 47 355643.0 48 357149.0 49 358655.0 50 322200.5 51 285746.0 52 262835.0 53 239924.0 54 239924.0 55 203818.5 56 167713.0 57 134552.5 58 101392.0 59 86509.0 60 71626.0 61 71626.0 62 61890.5 63 52155.0 64 44806.0 65 37457.0 66 31955.5 67 26454.0 68 26454.0 69 21976.5 70 17499.0 71 14538.0 72 11577.0 73 9464.5 74 7352.0 75 7352.0 76 5630.0 77 3908.0 78 3042.5 79 2177.0 80 1692.0 81 1207.0 82 1207.0 83 873.5 84 540.0 85 436.5 86 333.0 87 254.5 88 176.0 89 176.0 90 137.0 91 98.0 92 60.0 93 22.0 94 13.0 95 4.0 96 4.0 97 2.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3319104.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.302588879438844 #Duplication Level Percentage of deduplicated Percentage of total 1 71.776756535607 28.21012353218537 2 14.347863959435825 11.278163969916477 3 5.692930889575614 6.712407668161452 4 2.737119280767566 4.303034952239719 5 1.4923170111779018 2.9325960984059005 6 0.8830842984036297 2.082449947562733 7 0.5832376201448658 1.6045923882503186 8 0.39384934096981145 1.2383438982859543 9 0.29112108971245615 1.0297631252792607 >10 1.5319083204296147 11.393585252793564 >50 0.15713739009407868 4.256934589392576 >100 0.0952223973998879 6.985899429361894 >500 0.008532023515500555 2.3359740161486378 >1k 0.007368565763347071 6.2141944885413425 >5k 6.980746512644594E-4 2.021098570966472 >10k+ 8.532023515454504E-4 7.400838072508535 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 45961 1.384741183162685 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 44187 1.3312930236593972 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 39037 1.1761306665895375 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 24946 0.751588380478587 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15623 0.4706993212626058 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 13659 0.4115267252848962 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 13404 0.4038439289639614 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 12599 0.379590395480226 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 12576 0.3788974373806907 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 10684 0.32189410154065673 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 10097 0.30420860569599506 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 9755 0.29390462004203544 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 9733 0.2932417905555234 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 8361 0.25190533348759186 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 8076 0.2433186787759588 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 7161 0.2157509978596633 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 6998 0.2108400339368697 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5670 0.17082923584196216 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 5400 0.16269451032567825 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5145 0.15501171400474345 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4818 0.14515965754613294 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4673 0.14079100865775823 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4655 0.14024869362333933 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4645 0.13994740749310655 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 4395 0.13241525423728812 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3997 0.12042406625402519 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3633 0.10945725111355355 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 3554 0.10707709068471492 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 3541 0.10668541871541234 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 3426 0.10322062821773587 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3421 0.1030699851526195 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 3.0128613023273752E-5 0.0 5 0.0 0.0 0.0 3.0128613023273752E-5 0.0 6 3.0128613023273752E-5 0.0 0.0 3.0128613023273752E-5 0.0 7 3.0128613023273752E-5 0.0 0.0 6.0257226046547504E-5 0.0 8 3.0128613023273752E-5 0.0 0.0 9.038583906982126E-5 0.0 9 3.0128613023273752E-5 0.0 0.0 1.807716781396425E-4 0.0 10 3.0128613023273752E-5 0.0 0.0 3.3141474325601124E-4 0.0 11 3.0128613023273752E-5 0.0 0.0 6.929580995352963E-4 0.0 12 3.0128613023273752E-5 0.0 0.0 0.0010243728427913076 0.0 13 9.038583906982126E-5 0.0 0.0 0.00120514452093095 0.0 14 9.038583906982126E-5 0.0 0.0 0.00144617342511714 0.0 15 9.038583906982126E-5 0.0 0.0 0.002078874298605889 0.0 16 9.038583906982126E-5 0.0 0.0 0.003253890206513565 0.0 17 9.038583906982126E-5 0.0 0.0 0.005453278957212549 0.0 18 9.038583906982126E-5 0.0 0.0 0.0062968801218642135 0.0 19 9.038583906982126E-5 0.0 0.0 0.007592410481864985 0.0 20 9.038583906982126E-5 0.0 0.0 0.009490513102331231 0.0 21 9.038583906982126E-5 0.0 0.0 0.013979676442799021 0.0 22 9.038583906982126E-5 0.0 0.0 0.023078517575827694 0.0 23 9.038583906982126E-5 0.0 0.0 0.03612420701490523 0.0 24 9.038583906982126E-5 0.0 0.0 0.054502660959102216 0.0 25 9.038583906982126E-5 0.0 0.0 0.061402113341431905 0.0 26 9.038583906982126E-5 0.0 0.0 0.07074198337864676 0.0 27 9.038583906982126E-5 0.0 0.0 0.14296026879543394 0.0 28 9.038583906982126E-5 0.0 0.0 0.2160221553768728 0.0 29 9.038583906982126E-5 0.0 0.0 0.3031239756271572 0.0 30 9.038583906982126E-5 0.0 0.0 0.48226870866354293 0.0 31 9.038583906982126E-5 0.0 0.0 0.7318842675613659 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9970 0.0 30.375628 1 ATTGGAC 1195 0.0 23.37657 3 GTATTGG 1175 0.0 23.144682 1 TATTGGA 1350 0.0 20.555555 2 TTGGACC 1945 0.0 20.354755 4 GGACCCT 2010 0.0 18.960197 6 TGGACCC 1970 0.0 18.875635 5 CGTCTGT 1040 0.0 18.5 34 GTATCAA 17950 0.0 17.118942 2 GACCCTC 2180 0.0 16.633028 7 ACGTTTA 200 3.6379788E-12 15.725 26 TGCGTCT 1195 0.0 15.32636 32 CGCCGGA 170 1.4897523E-9 15.235294 14 TATACGG 195 4.1836756E-11 15.179486 2 GTACGGA 75 0.0041065775 14.8 6 TTTTTAC 2515 0.0 14.785289 1 GTATACG 230 1.8189894E-12 14.47826 1 GCGTCTG 1330 0.0 14.466166 33 ACCCTCG 2485 0.0 14.293763 8 GTTATCA 465 0.0 13.526881 1 >>END_MODULE