##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088186_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 869021 Sequences flagged as poor quality 0 Sequence length 43 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.482561411059113 31.0 31.0 33.0 27.0 34.0 2 30.87614683649762 31.0 31.0 34.0 27.0 34.0 3 31.05115411480275 31.0 31.0 34.0 28.0 34.0 4 35.10412751820727 35.0 35.0 37.0 32.0 37.0 5 34.97529864065425 35.0 35.0 37.0 32.0 37.0 6 35.029826667019556 36.0 35.0 37.0 32.0 37.0 7 34.82350023762372 36.0 35.0 37.0 32.0 37.0 8 34.96349340234586 36.0 35.0 37.0 32.0 37.0 9 36.3900297000878 38.0 35.0 39.0 32.0 39.0 10 36.28039713654791 38.0 35.0 39.0 32.0 39.0 11 36.329169260581736 38.0 35.0 39.0 32.0 39.0 12 36.14922309127167 38.0 35.0 39.0 31.0 39.0 13 36.22714065597955 38.0 35.0 39.0 32.0 39.0 14 37.045676686754405 39.0 36.0 40.0 31.0 41.0 15 37.12245733992619 39.0 36.0 40.0 31.0 41.0 16 37.07838360638005 39.0 36.0 40.0 31.0 41.0 17 37.247079184507626 39.0 36.0 40.0 32.0 41.0 18 37.28661217623049 39.0 36.0 40.0 32.0 41.0 19 37.410284676664894 39.0 36.0 41.0 32.0 41.0 20 37.39233574332496 39.0 36.0 41.0 32.0 41.0 21 37.286234740012034 39.0 36.0 41.0 31.0 41.0 22 37.23737285980431 39.0 36.0 40.0 31.0 41.0 23 37.10174322599799 39.0 36.0 40.0 31.0 41.0 24 37.024624261093805 39.0 35.0 40.0 31.0 41.0 25 36.92156230977157 39.0 35.0 40.0 31.0 41.0 26 36.623348572704224 38.0 35.0 40.0 30.0 41.0 27 36.45735143339459 38.0 35.0 40.0 30.0 41.0 28 36.27422812567245 38.0 35.0 40.0 30.0 41.0 29 36.12106611923072 38.0 35.0 40.0 30.0 41.0 30 35.91586854632972 38.0 35.0 40.0 30.0 41.0 31 35.577437139033464 38.0 34.0 40.0 29.0 41.0 32 35.23190003463668 37.0 34.0 40.0 27.0 41.0 33 35.28817945711324 37.0 34.0 40.0 27.0 41.0 34 35.21916846658481 38.0 34.0 40.0 27.0 41.0 35 35.07499013257447 38.0 33.0 40.0 26.0 41.0 36 34.915897314334174 37.0 33.0 40.0 25.0 41.0 37 34.73976002881403 37.0 33.0 40.0 25.0 41.0 38 34.554866913457786 37.0 33.0 40.0 24.0 41.0 39 34.41229613553642 38.0 33.0 40.0 23.0 41.0 40 34.140796367406544 37.0 33.0 40.0 21.0 41.0 41 33.93650671272616 37.0 33.0 40.0 20.0 41.0 42 33.653864521110535 37.0 33.0 40.0 18.0 41.0 43 33.26741816365772 37.0 32.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 3.0 15 3.0 16 18.0 17 32.0 18 64.0 19 186.0 20 412.0 21 756.0 22 1406.0 23 2430.0 24 3850.0 25 6028.0 26 9090.0 27 13166.0 28 18129.0 29 24084.0 30 30707.0 31 37230.0 32 45059.0 33 54294.0 34 65546.0 35 77234.0 36 95359.0 37 122186.0 38 135496.0 39 126252.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.589607155638355 24.703315570049515 15.177193646643753 20.529883627668376 2 17.345265534434727 23.607599816345058 36.74238021865985 22.304754430560365 3 20.349450703722923 25.7986861077005 33.36271505521731 20.489148133359265 4 12.81016224003793 15.569934443471448 34.00378126650565 37.61612204998499 5 10.35694189208316 41.88586927128343 33.9644266364104 13.792762200223011 6 31.30787403296353 35.053007925009865 15.062351772857044 18.57676626916956 7 23.192880264113295 37.31624437153993 20.398701527350894 19.092173836995883 8 28.562946119829096 33.165711760705435 19.852914946819467 18.418427172646002 9 24.86153959455525 13.672166725545182 25.407671391140145 36.058622288759416 10 16.751724066507023 28.661677911120677 32.76008289788164 21.826515124490662 11 30.214459719615522 21.652756377578907 25.805360284734203 22.32742361807137 12 20.355204304614045 28.502993598543647 31.591986844966925 19.549815251875387 13 31.79025593167484 21.168303182546797 30.106982454969444 16.93445843080892 14 20.534716652416915 23.49126200632666 29.88052072389505 26.093500617361375 15 22.65491858079379 29.40055533755801 28.428542003012584 19.515984078635615 16 20.939540011115955 28.404031663216422 28.539471428193337 22.116956897474285 17 17.977471200350738 27.621196725970947 28.713690463176377 25.68764161050193 18 19.146027541336746 26.404425209517374 34.94645123650636 19.50309601263951 19 18.18333504023493 24.71079525120797 36.96769122955602 20.13817847900108 20 24.002411909493556 23.02257367773621 35.21537454215721 17.75963987061302 21 23.293683351725676 24.183765409581586 33.4913655711427 19.031185667550034 22 20.62148095385497 24.094239379715795 34.40860462520469 20.87567504122455 23 19.61149385342817 26.797281078362893 35.77635062904119 17.814874439167752 24 17.69531461265033 25.72929768095362 33.769839854272796 22.80554785212325 25 19.21760233642225 26.933641419482385 35.45299825896037 18.395757985135 26 20.95530487755762 25.474183017441465 33.583538257418404 19.986973847582508 27 19.46604282290071 27.344793739161656 32.94995172728852 20.239211710649112 28 19.064326408682874 26.771504946370683 33.09563290185162 21.068535743094817 29 17.66125329537491 26.745153454289365 34.34922746400835 21.244365786327375 30 16.870593460917515 26.675880099560313 37.48436458957839 18.969161849943788 31 18.840741478054042 26.119737037424873 35.35553225986484 19.68398922465625 32 20.39421371865582 26.50120077650598 32.83292348516319 20.271662019675013 33 21.708336162187106 26.41144460260454 31.892670027536735 19.98754920767162 34 19.19700444523205 30.057386415288008 32.18679410509067 18.558815034389273 35 17.402341255274614 31.05609645796822 32.274594054689125 19.26696823206804 36 18.632000837724288 26.37335576470534 35.34816765072421 19.646475746846164 37 18.66640737105317 26.63951734192845 34.173052204722325 20.521023082296054 38 19.28411396272357 26.23204732681949 34.75554675893908 19.728291951517857 39 20.783042066877556 25.55404299781018 34.16867946804508 19.494235467267192 40 18.410717347451904 26.692910758198018 33.26283254374751 21.633539350602575 41 19.537042257897106 25.993848249927215 33.06145651255839 21.407652979617296 42 16.376474216388324 28.050645496483973 33.61725435864035 21.955625928487343 43 17.128124636803943 27.862617819362246 33.16214452815294 21.847113015680865 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 72.0 1 109.5 2 147.0 3 455.0 4 763.0 5 763.0 6 1383.0 7 2003.0 8 2268.0 9 2533.0 10 3994.0 11 5455.0 12 5455.0 13 9970.0 14 14485.0 15 24348.0 16 34211.0 17 32554.0 18 30897.0 19 30897.0 20 32408.0 21 33919.0 22 26415.5 23 18912.0 24 19720.5 25 20529.0 26 20529.0 27 21577.0 28 22625.0 29 22627.0 30 22629.0 31 23738.5 32 24848.0 33 24848.0 34 26296.0 35 27744.0 36 29562.5 37 31381.0 38 32902.0 39 34423.0 40 34423.0 41 36255.0 42 38087.0 43 46530.0 44 54973.0 45 75258.5 46 95544.0 47 95544.0 48 96784.5 49 98025.0 50 86794.5 51 75564.0 52 68263.5 53 60963.0 54 60963.0 55 51562.5 56 42162.0 57 32445.0 58 22728.0 59 19223.0 60 15718.0 61 15718.0 62 13837.5 63 11957.0 64 10299.5 65 8642.0 66 7386.0 67 6130.0 68 6130.0 69 5206.5 70 4283.0 71 3546.0 72 2809.0 73 2270.0 74 1731.0 75 1731.0 76 1355.0 77 979.0 78 767.5 79 556.0 80 438.5 81 321.0 82 321.0 83 232.5 84 144.0 85 102.5 86 61.0 87 54.0 88 47.0 89 47.0 90 31.5 91 16.0 92 10.0 93 4.0 94 2.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 869021.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.40714289568081 #Duplication Level Percentage of deduplicated Percentage of total 1 77.69273981195533 33.724198589744944 2 12.153394416509418 10.550882562099872 3 4.083061035357477 5.317020414406453 4 1.803950984056702 3.1321743256701318 5 1.023072968459698 2.220433726731923 6 0.6341969479941599 1.651720652735229 7 0.4316253678645848 1.3114936814209177 8 0.3065091239988609 1.06437482753988 9 0.22129480002544707 0.8645197506098122 >10 1.4375085213732326 11.68726760982402 >50 0.11259310630823095 3.3484090411692415 >100 0.07764106289123406 6.973138824685873 >500 0.01227315770781938 3.9206389076793404 >1k 0.00880465661647912 7.669178757171475 >5k 5.336155525138861E-4 1.3755185155379888 >10k+ 8.004233287708292E-4 5.1890298129729375 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 15937 1.8339027480348578 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 15845 1.823316122395201 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 13023 1.4985828881005177 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6669 0.7674152868572797 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5208 0.5992950688188203 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4436 0.5104594710599629 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4256 0.4897465078519392 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 3966 0.45637562268345644 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3399 0.3911297885781816 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3280 0.3774362184573215 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 3110 0.3578739754275213 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 2981 0.3430296851284377 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2865 0.3296813310610445 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2718 0.3127657444411585 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2506 0.2883704766628194 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2291 0.2636299928310133 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2114 0.2432622456764566 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2019 0.232330403983333 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1857 0.2136887370961116 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1823 0.20977628849015156 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1745 0.20080067110000793 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1663 0.1913647656385749 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1561 0.1796274198206948 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1401 0.16121589696911812 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1339 0.15408143186413217 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 1300 0.14959362316906036 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 1274 0.14660175070567916 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1241 0.14280437411754146 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 1207 0.13889192551158142 No Hit GGGGAGAAGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1168 0.1344041168165096 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 1157 0.1331383246204637 No Hit GCCGAGGGGAGAAGAGTAAAAAAAAAAAAAAAAAAAAAAAAAA 1154 0.13279310856699666 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1137 0.13083688426401663 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTC 1124 0.12934094803232601 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 1063 0.12232155494516243 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 1060 0.12197633889169537 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 1004 0.11553230589364354 No Hit CTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTAC 1001 0.11518708984017648 No Hit ATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGT 998 0.1148418737867094 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 996 0.1146117297510647 No Hit CTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTG 981 0.1128856494837294 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 954 0.10977870500252583 No Hit ATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAG 935 0.1075923366639011 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCT 918 0.10563611236092108 No Hit ACGCACATGCGAGGGTCCAAAAAAAAAAAAAAAAAAAAAAAAA 901 0.10367988805794107 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 899 0.10344974402229634 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACCTGTCTCT 894 0.1028743839331846 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACT 882 0.10149351971931633 No Hit TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 880 0.10126337568367164 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 878 0.10103323164802691 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 1.1507201782235412E-4 0.0 0.0 0.0 0.0 7 2.3014403564470824E-4 0.0 0.0 0.0 0.0 8 3.4521605346706234E-4 0.0 0.0 0.0 0.0 9 3.4521605346706234E-4 0.0 0.0 1.1507201782235412E-4 0.0 10 3.4521605346706234E-4 0.0 0.0 3.4521605346706234E-4 0.0 11 3.4521605346706234E-4 0.0 0.0 4.602880712894165E-4 0.0 12 3.4521605346706234E-4 0.0 0.0 8.055041247564789E-4 0.0 13 4.602880712894165E-4 0.0 0.0 0.0011507201782235412 0.0 14 5.753600891117706E-4 0.0 0.0 0.002071296320802374 0.0 15 5.753600891117706E-4 0.0 0.0 0.0033370885168482697 0.0 16 9.20576142578833E-4 0.0 0.0 0.005063168784183582 0.0 17 9.20576142578833E-4 0.0 0.0 0.006559105015874185 0.0 18 9.20576142578833E-4 0.0 0.0 0.007479681158453018 0.0 19 0.001035648160401187 0.0 0.0 0.008515329318854205 0.0 20 0.001035648160401187 0.0 0.0 0.010471553621834225 0.0 21 0.001035648160401187 0.0 0.0 0.015534722406017807 0.0 22 0.001035648160401187 0.0 0.0 0.024050051724872012 0.0 23 0.001035648160401187 0.0 0.0 0.03739840579226509 0.0 24 0.001035648160401187 0.0 0.0 0.057881224964644123 0.0 25 0.001035648160401187 0.0 0.0 0.06777741849736657 0.0 26 0.0011507201782235412 0.0 0.0 0.08112577256475965 0.0 27 0.0011507201782235412 0.0 0.0 0.17675061937513592 0.0 28 0.0011507201782235412 0.0 0.0 0.27156996206075573 0.0 29 0.0011507201782235412 0.0 0.0 0.3879077720791557 0.0 30 0.0012657921960458954 0.0 0.0 0.6341618902189936 0.0 31 0.00195622430298002 0.0 0.0 0.9762709992048524 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3555 0.0 29.558367 1 CTGTGCG 65 2.9885996E-9 28.461538 9 GTATTGG 215 0.0 24.953487 1 GTTCGCT 70 1.9217987E-7 23.785715 37 TAGGTCG 55 1.9019659E-5 23.545454 21 ATTGGAC 240 0.0 22.354168 3 CGGGATA 50 2.7013663E-4 22.2 24 CGTCATT 60 3.724939E-5 21.583334 26 TATACCG 70 5.0995586E-6 21.142859 5 TCGGGAT 55 5.141705E-4 20.181818 23 CGTCTGT 350 0.0 20.085714 34 TGTGCGC 85 1.2445926E-6 19.588236 10 AGTATCA 125 4.110916E-10 19.240002 1 AGCCGTC 60 9.234342E-4 18.5 12 ACTGCGT 60 9.234342E-4 18.5 8 GCGCCAT 50 0.007033533 18.5 11 GCGCCAA 80 1.6159309E-5 18.5 13 AAGCCGT 70 1.2187629E-4 18.5 11 TAAGCCG 60 9.234342E-4 18.5 10 ATTGATC 50 0.007033533 18.5 8 >>END_MODULE