##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088185_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1052745 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.502340072857148 31.0 31.0 33.0 28.0 34.0 2 30.935138138865536 31.0 31.0 34.0 28.0 34.0 3 31.13221245410807 31.0 31.0 34.0 28.0 34.0 4 35.17658787265672 35.0 35.0 37.0 33.0 37.0 5 35.03439009446732 35.0 35.0 37.0 32.0 37.0 6 35.06779799476607 37.0 35.0 37.0 32.0 37.0 7 34.87215612517751 36.0 35.0 37.0 32.0 37.0 8 34.9883808519632 36.0 35.0 37.0 32.0 37.0 9 36.46910505393044 38.0 35.0 39.0 32.0 39.0 10 36.3351628362044 38.0 35.0 39.0 32.0 39.0 11 36.38247058879406 38.0 35.0 39.0 32.0 39.0 12 36.20466589724957 38.0 35.0 39.0 32.0 39.0 13 36.268507568309516 38.0 35.0 39.0 32.0 39.0 14 37.147876266332304 39.0 36.0 41.0 31.0 41.0 15 37.22890538544472 39.0 36.0 41.0 32.0 41.0 16 37.19813820060889 39.0 36.0 41.0 32.0 41.0 17 37.30845171432778 39.0 36.0 41.0 32.0 41.0 18 37.32210269343478 39.0 36.0 40.0 32.0 41.0 19 37.43236301288536 39.0 36.0 41.0 32.0 41.0 20 37.403649506765646 39.0 36.0 41.0 32.0 41.0 21 37.28573871165382 39.0 36.0 41.0 31.0 41.0 22 37.24565208098827 39.0 36.0 41.0 31.0 41.0 23 37.11619717975388 39.0 36.0 40.0 31.0 41.0 24 37.028314549107336 39.0 36.0 40.0 31.0 41.0 25 36.94291210122109 39.0 35.0 40.0 31.0 41.0 26 36.66605208288807 38.0 35.0 40.0 30.0 41.0 27 36.540657044203485 38.0 35.0 40.0 30.0 41.0 28 36.38951502975554 38.0 35.0 40.0 30.0 41.0 29 36.248560667588066 38.0 35.0 40.0 30.0 41.0 30 36.06490460652865 38.0 35.0 40.0 30.0 41.0 31 35.79433386052653 38.0 34.0 40.0 29.0 41.0 32 35.45504561883457 38.0 34.0 40.0 27.0 41.0 33 35.58403317042589 38.0 34.0 40.0 28.0 41.0 34 35.546881723494295 38.0 34.0 40.0 28.0 41.0 35 35.44564828139768 38.0 34.0 40.0 27.0 41.0 36 35.341376116723424 38.0 34.0 40.0 27.0 41.0 37 35.202392792176646 38.0 34.0 40.0 26.0 41.0 38 35.05520045215128 38.0 34.0 40.0 25.0 41.0 39 34.98718968031195 38.0 34.0 40.0 25.0 41.0 40 34.80039705721708 38.0 33.0 40.0 24.0 41.0 41 34.64573852167429 38.0 33.0 40.0 23.0 41.0 42 34.41884026996091 38.0 33.0 40.0 22.0 41.0 43 34.06096633087785 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 4.0 16 15.0 17 34.0 18 68.0 19 189.0 20 347.0 21 779.0 22 1514.0 23 2421.0 24 3971.0 25 6425.0 26 9647.0 27 14219.0 28 19963.0 29 26982.0 30 34602.0 31 42506.0 32 52569.0 33 63770.0 34 77256.0 35 93669.0 36 114984.0 37 147727.0 38 173628.0 39 165455.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.537684814461244 24.25516150634769 14.38154538848439 21.825608290706676 2 17.25289600045595 23.36292264508499 36.75581456098105 22.628366793478 3 19.70201710765665 26.013327064008852 32.90084493395837 21.383810894376133 4 13.000679176818696 15.917339906625061 35.304750913089116 35.777230003467125 5 10.995825199834718 40.901642847983126 34.62956366451515 13.472968287667003 6 31.164052073389094 36.114633648224405 15.592664890358062 17.128649388028443 7 23.991374929351363 36.07160328474607 21.35094443573705 18.58607735016552 8 27.666908890567043 33.71870680934129 20.282024611848072 18.332359688243592 9 25.232891155977942 13.798688191347383 24.52056290934652 36.44785774332816 10 16.342134135046948 28.288236942469446 33.69248963424191 21.677139288241694 11 30.89352122308821 22.07856603450978 25.57827394098286 21.449638801419148 12 20.22902032306019 28.243211793929202 31.61430355879154 19.913464324219067 13 30.832347814522986 21.43956988634475 29.25114818878266 18.47693411034961 14 20.692190416482624 23.15736479394345 29.097264769721065 27.053180019852864 15 22.731525678108184 29.54105695111352 27.314401873198165 20.413015497580137 16 21.363198115403065 28.704102132995168 27.74100090715225 22.191698844449512 17 18.98484438301773 27.77063771378634 28.293366389771503 24.951151513424428 18 19.8443117754062 27.103904554284274 33.18058979144997 19.871193878859554 19 19.324432792366622 25.592902364770197 34.66698963186717 20.415675210996014 20 23.853544780549896 24.28156866097678 33.22855962270065 18.636326935772672 21 23.139411728386268 25.293684605483758 31.796303948249577 19.7705997178804 22 21.237621646267616 25.135431657238932 32.610461222803245 21.01648547369021 23 20.36865527739386 27.101719789692662 33.57736203924027 18.952262893673208 24 18.8817804881524 26.34873592370422 32.08203316092691 22.68745042721647 25 20.050154595842297 27.30233817306185 33.47258832860759 19.17491890248826 26 21.38989023932671 26.128834618069902 31.97592959358629 20.505345549017093 27 20.10809835240253 27.698350502733334 31.34386769825551 20.849683446608626 28 19.717975388151928 27.227391248592962 31.557689658939246 21.49694370431586 29 18.772732238101344 27.235750347900012 32.498753259336304 21.492764154662336 30 18.14617974913203 27.28087048620511 34.91044839918499 19.66250136547787 31 19.85637547554251 26.615372193646138 33.38111318505431 20.147139145757045 32 20.937548979097503 26.961514896769874 31.421379346375428 20.679556777757195 33 21.87804264090544 26.86263055155807 30.757970828643217 20.501355978893272 34 19.909854713154658 29.723912248455232 30.87328840317456 19.492944635215554 35 18.450336976190815 30.435860536027242 31.0554787721623 20.058323715619643 36 19.572736037691936 26.64500900028022 33.39897126084664 20.3832837011812 37 19.49341958403982 26.932543018489756 32.45648281397679 21.11755458349363 38 20.032676479109377 26.592954609140868 32.945870082498615 20.428498829251147 39 21.039188027490038 26.02254107119958 32.77213380258277 20.166137098727614 40 19.116975145928023 26.783694056965363 32.117274363687315 21.9820564334193 41 20.014628423787336 26.130069485012992 32.090867209058224 21.764434882141448 42 17.47317726514968 27.8563184816836 32.5219307619604 22.14857349120632 43 18.06581840806653 27.594336710219476 32.23667649810733 22.10316838360667 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 76.0 1 138.0 2 200.0 3 517.5 4 835.0 5 835.0 6 1440.0 7 2045.0 8 2309.5 9 2574.0 10 3889.5 11 5205.0 12 5205.0 13 9261.5 14 13318.0 15 22026.5 16 30735.0 17 30081.0 18 29427.0 19 29427.0 20 31190.5 21 32954.0 22 26941.0 23 20928.0 24 22933.5 25 24939.0 26 24939.0 27 26970.0 28 29001.0 29 29551.0 30 30101.0 31 32272.0 32 34443.0 33 34443.0 34 37318.0 35 40193.0 36 43225.5 37 46258.0 38 47551.0 39 48844.0 40 48844.0 41 51405.0 42 53966.0 43 61878.5 44 69791.0 45 88634.5 46 107478.0 47 107478.0 48 108870.5 49 110263.0 50 98802.0 51 87341.0 52 79692.5 53 72044.0 54 72044.0 55 62231.0 56 52418.0 57 42475.5 58 32533.0 59 28005.0 60 23477.0 61 23477.0 62 20180.5 63 16884.0 64 14509.0 65 12134.0 66 10199.5 67 8265.0 68 8265.0 69 6929.5 70 5594.0 71 4551.0 72 3508.0 73 2814.5 74 2121.0 75 2121.0 76 1736.5 77 1352.0 78 1041.5 79 731.0 80 573.0 81 415.0 82 415.0 83 289.5 84 164.0 85 128.5 86 93.0 87 77.5 88 62.0 89 62.0 90 46.5 91 31.0 92 16.0 93 1.0 94 2.0 95 3.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1052745.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.49848515135764 #Duplication Level Percentage of deduplicated Percentage of total 1 77.93141875499894 37.01624336558552 2 12.197142565643238 11.586915900863952 3 4.139285389398379 5.898293568167116 4 1.8658240266778168 3.5449525930481043 5 0.9759214946119378 2.317739631035794 6 0.5810384816301385 1.6559068615245913 7 0.3801719080032056 1.2640312809077494 8 0.27907904342860523 1.060466544027896 9 0.21039869027809455 0.8994257159435254 >10 1.2460010678486777 11.245501011779739 >50 0.11038247975828773 3.626438429694788 >100 0.06759707692664581 6.4797903651148445 >500 0.009080204305415254 3.166958234466885 >1k 0.0058516872190453855 5.801026362598514 >5k 2.0178231789811673E-4 0.6035267984879694 >10k+ 6.053469536943503E-4 3.8327833367530415 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 14087 1.3381208174819164 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 13979 1.32786192287781 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 11924 1.1326579561052297 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6297 0.5981505492783152 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4404 0.41833492441189457 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4104 0.3898379949560435 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3696 0.35108217089608595 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 3625 0.3443378975915345 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3270 0.31061653106877735 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3134 0.2976979230487915 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 3036 0.2883889260932135 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 2777 0.2637865769963286 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2608 0.24773330673619917 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2316 0.21999629539917073 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2288 0.21733658198329128 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2267 0.21534179692138172 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1900 0.1804805532203905 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1798 0.17079159720540113 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1738 0.16509221131423088 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1619 0.15378842929674327 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1575 0.14960887964321842 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1386 0.13165581408603222 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1370 0.13013597784838682 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1325 0.12586143843000916 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1274 0.12101696042251449 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 1265 0.12016205253883892 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 1200 0.11398771782340453 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1166 0.11075806581840808 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 1126 0.10695847522429458 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 1100 0.10448874133812082 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTC 1064 0.10106910980341868 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1062 0.10087913027371301 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 9.49897648528371E-5 0.0 11 0.0 0.0 0.0 2.849692945585113E-4 0.0 12 0.0 0.0 0.0 3.799590594113484E-4 0.0 13 0.0 0.0 0.0 6.649283539698598E-4 0.0 14 0.0 0.0 0.0 7.599181188226969E-4 0.0 15 0.0 0.0 0.0 0.0015198362376453937 0.0 16 9.49897648528371E-5 0.0 0.0 0.0022797543564680904 0.0 17 9.49897648528371E-5 0.0 0.0 0.0039895701238191585 0.0 18 9.49897648528371E-5 0.0 0.0 0.004369529183230507 0.0 19 9.49897648528371E-5 0.0 0.0 0.005129447302053204 0.0 20 9.49897648528371E-5 0.0 0.0 0.005984355185728737 0.0 21 9.49897648528371E-5 0.0 0.0 0.008739058366461014 0.0 22 9.49897648528371E-5 0.0 0.0 0.014153474963072728 0.0 23 9.49897648528371E-5 0.0 0.0 0.023842430978062115 0.0 24 9.49897648528371E-5 0.0 0.0 0.03837586500054619 0.0 25 9.49897648528371E-5 0.0 0.0 0.044265230421422094 0.0 26 9.49897648528371E-5 0.0 0.0 0.055284043144351196 0.0 27 9.49897648528371E-5 0.0 0.0 0.14162973939558013 0.0 28 9.49897648528371E-5 0.0 0.0 0.23130007741665837 0.0 29 9.49897648528371E-5 9.49897648528371E-5 0.0 0.33645374710874904 0.0 30 9.49897648528371E-5 9.49897648528371E-5 0.0 0.5394468745992619 0.0 31 9.49897648528371E-5 9.49897648528371E-5 0.0 0.8344850842321739 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGTACG 20 0.001841866 37.0 4 GGTATCA 3215 0.0 30.497667 1 TGCGGTC 45 1.3231089E-4 24.666666 12 AGCCGTC 70 1.922599E-7 23.785715 12 CAATGCG 40 0.0019310802 23.125 19 ATTGGAC 240 0.0 20.812498 3 CGATCTG 125 1.8189894E-11 20.72 33 GAGCGAT 90 9.476389E-8 20.555555 21 ACGTTTA 55 5.142699E-4 20.181818 26 CGTCTGT 295 0.0 20.067799 34 TTGCGTG 65 6.901423E-5 19.923079 7 ACGATCT 140 3.6379788E-12 19.82143 32 GTATTGG 255 0.0 18.862745 1 GTATTAC 60 9.236114E-4 18.5 1 ATAGGAC 60 9.236114E-4 18.5 3 ACTGGGT 70 1.2190735E-4 18.5 8 TTGGACC 515 0.0 18.320389 4 GGATAAG 115 6.4033884E-8 17.695652 1 CGGGATA 115 6.4033884E-8 17.695652 24 GCCGTCA 95 3.6058045E-6 17.526316 13 >>END_MODULE