##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088180_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1096165 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.610301368863265 31.0 31.0 33.0 28.0 34.0 2 30.99109623095063 31.0 31.0 34.0 28.0 34.0 3 31.183923040783093 31.0 31.0 34.0 28.0 34.0 4 35.21142163816579 37.0 35.0 37.0 33.0 37.0 5 35.0846870680965 35.0 35.0 37.0 32.0 37.0 6 35.126454502743655 37.0 35.0 37.0 32.0 37.0 7 34.9383496097759 36.0 35.0 37.0 32.0 37.0 8 35.04552143153631 37.0 35.0 37.0 32.0 37.0 9 36.53716274465979 38.0 35.0 39.0 32.0 39.0 10 36.41499682985682 38.0 35.0 39.0 32.0 39.0 11 36.45440513061446 38.0 35.0 39.0 32.0 39.0 12 36.283105189455966 38.0 35.0 39.0 32.0 39.0 13 36.33966601743351 38.0 35.0 39.0 32.0 39.0 14 37.23568623336815 39.0 36.0 41.0 32.0 41.0 15 37.29557502748218 39.0 36.0 41.0 32.0 41.0 16 37.255984272440735 39.0 36.0 41.0 32.0 41.0 17 37.37050261593829 39.0 36.0 41.0 32.0 41.0 18 37.38066805636013 39.0 36.0 41.0 32.0 41.0 19 37.4914406134113 39.0 36.0 41.0 32.0 41.0 20 37.46264202925654 39.0 36.0 41.0 32.0 41.0 21 37.33790715813769 39.0 36.0 41.0 31.0 41.0 22 37.28959052697358 39.0 36.0 41.0 31.0 41.0 23 37.16566666514621 39.0 36.0 40.0 31.0 41.0 24 37.07903645892726 39.0 36.0 40.0 31.0 41.0 25 36.98854369552029 39.0 36.0 40.0 31.0 41.0 26 36.72207468766107 39.0 35.0 40.0 30.0 41.0 27 36.58851723964914 38.0 35.0 40.0 30.0 41.0 28 36.42911879142282 38.0 35.0 40.0 30.0 41.0 29 36.31152061961475 38.0 35.0 40.0 30.0 41.0 30 36.1252895321416 38.0 35.0 40.0 30.0 41.0 31 35.856766089046815 38.0 34.0 40.0 29.0 41.0 32 35.53033712990289 38.0 34.0 40.0 27.0 41.0 33 35.66522649418655 38.0 34.0 40.0 29.0 41.0 34 35.63222416333308 38.0 34.0 40.0 28.0 41.0 35 35.53229760118231 38.0 34.0 40.0 27.0 41.0 36 35.433991233071666 38.0 34.0 40.0 27.0 41.0 37 35.292722354754986 38.0 34.0 40.0 26.0 41.0 38 35.15097818302902 38.0 34.0 40.0 26.0 41.0 39 35.08957501835946 38.0 34.0 40.0 25.0 41.0 40 34.90699301656229 38.0 33.0 40.0 24.0 41.0 41 34.76105695766604 38.0 33.0 40.0 24.0 41.0 42 34.541062704975985 38.0 33.0 40.0 23.0 41.0 43 34.195600114946195 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 3.0 16 14.0 17 29.0 18 71.0 19 154.0 20 334.0 21 762.0 22 1396.0 23 2436.0 24 4034.0 25 6428.0 26 9684.0 27 14339.0 28 20274.0 29 27375.0 30 35026.0 31 43269.0 32 53244.0 33 65439.0 34 78796.0 35 96181.0 36 119187.0 37 154455.0 38 184368.0 39 178865.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.40404501147181 23.62399821194802 14.015408264266785 21.956548512313383 2 17.50712712046088 22.969990831672238 36.94954682917261 22.573335218694265 3 19.895271241099653 26.124625398548577 32.44438565361967 21.535717706732108 4 12.695898883835918 15.55751187093184 35.232195882919086 36.51439336231316 5 11.080539882225759 40.590695743797696 34.71238362837711 13.616380745599429 6 31.539503633120923 35.65950381557521 15.492558145899569 17.308434405404295 7 24.398881555240315 35.71232433073488 21.093357295662603 18.795436818362198 8 27.79736627241337 33.668288989340105 20.18701564089348 18.347329097353043 9 25.149042343077916 13.532725456477813 24.142077150793902 37.176155049650376 10 16.41559436763626 27.564919514854058 33.55379892625654 22.465687191253142 11 31.16674953132056 21.541647470955557 25.610286772520563 21.68131622520332 12 20.350585906318848 27.304739706157378 31.961702845830693 20.382971541693085 13 31.50319523064502 20.756820369196245 29.1702435308553 18.569740869303438 14 20.844033516851933 22.517412980710024 28.78526499204043 27.85328851039761 15 23.011134272668805 28.717665679893084 27.61144535722268 20.659754690215433 16 21.82062007088349 28.35494656370163 27.370696929750537 22.45373643566434 17 19.194281882745752 27.04528971459589 28.01220619158612 25.748222211072235 18 20.249141324526875 26.267669557046613 33.065460035669815 20.417729082756704 19 19.42344446319669 24.714892374779343 34.487417496453546 21.37424566557042 20 24.57996743191034 23.123891020056288 33.111712196612736 19.184429351420633 21 23.837196042566585 24.410923537971016 31.566506867123106 20.185373552339293 22 21.872619541766067 23.876150032157568 32.60941555331542 21.641814872760946 23 20.581116893898272 26.124260489980976 33.873367604329644 19.421255011791107 24 19.08052163679738 25.22311878230011 32.19031806343023 23.50604151747228 25 20.560134651261443 26.217859537569616 33.516851933787336 19.705153877381598 26 22.236250929376506 24.963212655029125 31.8127289231092 20.987807492485164 27 20.664133593026598 26.609223976317438 31.43504855564628 21.291593875009692 28 20.21128206063868 25.821386378875445 31.618141429438083 22.349190131047788 29 19.179594312899976 25.902578535165784 32.72618629494647 22.19164085698777 30 18.525586932624194 26.05839449352971 35.098000757185275 20.318017816660813 31 20.203710207861043 25.596420246951872 33.40245309784567 20.797416447341412 32 21.75639616298641 25.749864299626424 31.089206460706187 21.404533076680973 33 22.708442615847066 25.52207012630398 30.617927045654625 21.151560212194333 34 20.42256412127736 28.885432393845818 30.72539261881195 19.966610866064872 35 19.004803109020997 29.748441156212795 30.924997605287523 20.32175812947868 36 20.068146674998747 25.615760401034514 33.41485998914397 20.90123293482277 37 20.275049832826262 26.01807209681024 32.366842583005294 21.3400354873582 38 20.688673694197497 25.487859948091756 32.99886422208335 20.824602135627394 39 21.74152613885683 24.988665027619017 32.72645997637217 20.54334885715198 40 19.78725830509093 25.91489419932218 31.72104564550045 22.576801850086436 41 20.76110804486551 25.450730501338757 31.576268171306328 22.211893282489406 42 18.09253169002842 27.271441799364148 32.18274621065259 22.45328029995484 43 18.96849470654509 27.030875826175805 31.615039706613512 22.385589760665596 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 64.0 1 102.0 2 140.0 3 432.0 4 724.0 5 724.0 6 1326.0 7 1928.0 8 2158.5 9 2389.0 10 3531.5 11 4674.0 12 4674.0 13 8755.5 14 12837.0 15 21565.0 16 30293.0 17 29861.5 18 29430.0 19 29430.0 20 31143.5 21 32857.0 22 26198.5 23 19540.0 24 21231.0 25 22922.0 26 22922.0 27 24804.0 28 26686.0 29 27444.5 30 28203.0 31 30122.5 32 32042.0 33 32042.0 34 34820.5 35 37599.0 36 41051.0 37 44503.0 38 46260.5 39 48018.0 40 48018.0 41 51127.5 42 54237.0 43 63112.5 44 71988.0 45 94519.5 46 117051.0 47 117051.0 48 118174.0 49 119297.0 50 106967.5 51 94638.0 52 86677.0 53 78716.0 54 78716.0 55 68278.0 56 57840.0 57 46897.5 58 35955.0 59 31725.0 60 27495.0 61 27495.0 62 23857.5 63 20220.0 64 17676.0 65 15132.0 66 12671.5 67 10211.0 68 10211.0 69 8562.5 70 6914.0 71 5928.5 72 4943.0 73 3937.0 74 2931.0 75 2931.0 76 2278.5 77 1626.0 78 1281.0 79 936.0 80 736.0 81 536.0 82 536.0 83 389.5 84 243.0 85 213.0 86 183.0 87 151.5 88 120.0 89 120.0 90 101.0 91 82.0 92 46.0 93 10.0 94 10.0 95 10.0 96 10.0 97 5.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1096165.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.348377459151784 #Duplication Level Percentage of deduplicated Percentage of total 1 79.51265788177189 38.443079960483075 2 11.471134972326768 11.092215270538624 3 3.71326765891315 5.385913991399815 4 1.6290817507741813 3.150538375929838 5 0.8665753618999982 2.0948756346971087 6 0.5425180505555991 1.5737920491999176 7 0.37611994206658345 1.2729352250264634 8 0.25425209827520595 0.9834141133752808 9 0.1984561006887087 0.8635527418652207 >10 1.2574581043053101 11.570589609221878 >50 0.10305324517303147 3.4153572400813554 >100 0.05961609315865617 5.6628338377620535 >500 0.00876147041188442 3.115875434636437 >1k 0.006285402686786648 6.673034563645075 >5k 1.904667480844439E-4 0.7802580848112819 >10k+ 5.714002442533318E-4 3.921733867326574 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 15255 1.3916700496731789 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 14438 1.317137474741485 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 12894 1.176282767649031 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8473 0.7729675733124118 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4811 0.43889377967732957 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 4518 0.412164227100847 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4444 0.40541341860030194 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4143 0.3779540488886254 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4107 0.3746698717802521 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3625 0.3306983893848098 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 3505 0.31975113235689884 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 3411 0.31117578101836857 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 3181 0.2901935383815393 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2702 0.24649573741179473 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2685 0.24494487599950737 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2537 0.23144325899841722 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2133 0.19458749367111702 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1870 0.1705947553516122 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1867 0.17032107392591442 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1749 0.15955627118180202 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1687 0.15390018838404804 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1584 0.14450379276842445 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1522 0.13884770997067047 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1419 0.12945131435504692 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1412 0.12881272436175212 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1272 0.116040924495856 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 1183 0.10792170886682205 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 1181 0.10773925458302354 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 1177 0.1073743460154265 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 1149 0.10481998604224729 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 1145 0.10445507747465026 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 1139 0.10390771462325471 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 9.122714189925787E-5 0.0 0.0 0.0 0.0 7 9.122714189925787E-5 0.0 0.0 0.0 0.0 8 9.122714189925787E-5 0.0 0.0 0.0 0.0 9 9.122714189925787E-5 0.0 0.0 1.8245428379851575E-4 0.0 10 9.122714189925787E-5 0.0 0.0 2.736814256977736E-4 0.0 11 9.122714189925787E-5 0.0 0.0 3.649085675970315E-4 0.0 12 9.122714189925787E-5 0.0 0.0 5.473628513955472E-4 0.0 13 9.122714189925787E-5 0.0 0.0 6.385899932948051E-4 0.0 14 9.122714189925787E-5 0.0 0.0 0.0012771799865896102 0.0 15 9.122714189925787E-5 0.0 0.0 0.002006997121783673 0.0 16 9.122714189925787E-5 0.0 0.0 0.003466631392171799 0.0 17 9.122714189925787E-5 0.0 0.0 0.005838537081552504 0.0 18 9.122714189925787E-5 0.0 0.0 0.007024489926242856 0.0 19 9.122714189925787E-5 0.0 0.0 0.008301669912832465 0.0 20 9.122714189925787E-5 0.0 0.0 0.010217439892716881 0.0 21 9.122714189925787E-5 0.0 0.0 0.015326159839075322 0.0 22 9.122714189925787E-5 0.0 0.0 0.026364644008885524 0.0 23 9.122714189925787E-5 0.0 0.0 0.042511848125054166 0.0 24 9.122714189925787E-5 0.0 0.0 0.06878526499204043 0.0 25 9.122714189925787E-5 0.0 0.0 0.07763429775626844 0.0 26 9.122714189925787E-5 0.0 0.0 0.08547983195960462 0.0 27 9.122714189925787E-5 0.0 0.0 0.1600124068912983 0.0 28 9.122714189925787E-5 0.0 0.0 0.24503610314140664 0.0 29 9.122714189925787E-5 0.0 0.0 0.34556841351438883 0.0 30 9.122714189925787E-5 0.0 0.0 0.5498259842268272 0.0 31 9.122714189925787E-5 0.0 0.0 0.8244196813435933 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3445 0.0 30.555878 1 ATTGGAC 365 0.0 24.835617 3 GTATTGG 405 0.0 22.839506 1 GGACCCT 560 0.0 22.794643 6 TTGGACC 625 0.0 21.903997 4 TCTATAC 60 3.726083E-5 21.583334 3 GATCGAT 70 5.101567E-6 21.142859 26 TGGACCC 645 0.0 20.937984 5 TGAACCG 45 0.0038256976 20.555555 5 CGCGAAT 65 6.901761E-5 19.923075 35 ATCGATG 65 6.901761E-5 19.923075 27 GACCCTC 640 0.0 19.65625 7 TATTGGA 495 0.0 18.686869 2 CGACGAA 90 2.1520318E-6 18.5 10 CGGATCG 70 1.2191316E-4 18.5 24 GACGCGA 70 1.2191316E-4 18.5 33 GAACCGT 50 0.007034679 18.5 6 CTGTGCG 70 1.2191316E-4 18.5 9 GTATCAA 5965 0.0 18.01928 2 CGTCTGT 355 0.0 17.71831 34 >>END_MODULE