##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088178_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1086246 Sequences flagged as poor quality 0 Sequence length 43 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.60420659776883 31.0 31.0 33.0 28.0 34.0 2 31.00148585127126 31.0 31.0 34.0 28.0 34.0 3 31.17867683747512 31.0 31.0 34.0 28.0 34.0 4 35.20966429335528 37.0 35.0 37.0 33.0 37.0 5 35.070967349937305 35.0 35.0 37.0 32.0 37.0 6 35.1017430674083 37.0 35.0 37.0 32.0 37.0 7 34.91056169596942 36.0 35.0 37.0 32.0 37.0 8 35.032952020076486 37.0 35.0 37.0 32.0 37.0 9 36.50981453556561 38.0 35.0 39.0 32.0 39.0 10 36.39163688519912 38.0 35.0 39.0 32.0 39.0 11 36.44049506281266 38.0 35.0 39.0 32.0 39.0 12 36.26528521163714 38.0 35.0 39.0 32.0 39.0 13 36.334744615860494 38.0 35.0 39.0 32.0 39.0 14 37.212486858409605 39.0 36.0 41.0 32.0 41.0 15 37.30556061886534 39.0 36.0 41.0 32.0 41.0 16 37.27467811158798 39.0 36.0 41.0 32.0 41.0 17 37.3840686179742 39.0 36.0 41.0 32.0 41.0 18 37.403806320115336 39.0 36.0 41.0 32.0 41.0 19 37.51700811786649 39.0 36.0 41.0 32.0 41.0 20 37.490109975088515 39.0 36.0 41.0 32.0 41.0 21 37.380847432349576 39.0 36.0 41.0 32.0 41.0 22 37.338995954875784 39.0 36.0 41.0 32.0 41.0 23 37.20758189213125 39.0 36.0 41.0 31.0 41.0 24 37.12372611728835 39.0 36.0 40.0 31.0 41.0 25 37.03099666189795 39.0 36.0 40.0 31.0 41.0 26 36.761366209864065 39.0 35.0 40.0 31.0 41.0 27 36.62038065042357 38.0 35.0 40.0 30.0 41.0 28 36.47002704728027 38.0 35.0 40.0 30.0 41.0 29 36.32200164603598 38.0 35.0 40.0 30.0 41.0 30 36.13932019082234 38.0 35.0 40.0 30.0 41.0 31 35.85065905881356 38.0 34.0 40.0 29.0 41.0 32 35.51809442796567 38.0 34.0 40.0 28.0 41.0 33 35.62538043868516 38.0 34.0 40.0 29.0 41.0 34 35.588302281435325 38.0 34.0 40.0 28.0 41.0 35 35.48122616792145 38.0 34.0 40.0 27.0 41.0 36 35.36247590324844 38.0 34.0 40.0 27.0 41.0 37 35.222349265267724 38.0 34.0 40.0 26.0 41.0 38 35.0691289081847 38.0 34.0 40.0 25.0 41.0 39 34.981175534823606 38.0 34.0 40.0 25.0 41.0 40 34.774519768082 38.0 33.0 40.0 24.0 41.0 41 34.6110153685261 38.0 33.0 40.0 23.0 41.0 42 34.36355576913517 38.0 33.0 40.0 22.0 41.0 43 33.99791483697063 38.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 3.0 15 1.0 16 19.0 17 25.0 18 69.0 19 165.0 20 425.0 21 772.0 22 1510.0 23 2388.0 24 3972.0 25 6290.0 26 9947.0 27 14467.0 28 20239.0 29 27053.0 30 35067.0 31 43452.0 32 53254.0 33 64994.0 34 79178.0 35 94990.0 36 118158.0 37 152191.0 38 179367.0 39 178250.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.216899302736216 24.508904981007984 14.823069544099587 21.451126172156215 2 17.07532179635184 23.602204288899568 36.973300707206285 22.349173207542307 3 19.585158426360145 26.046586132423045 33.27321803716654 21.09503740405028 4 12.879034767446784 15.99453530784003 35.4302800654732 35.69614985923999 5 10.699049754843747 41.12328146662911 34.74387937907251 13.433789399454636 6 30.916017182111606 36.37279216678358 15.530552011238708 17.180638639866107 7 23.425816988048748 36.51999639124103 21.429307909994606 18.62487871071562 8 27.564474345590224 33.79252950068401 20.46497754652261 18.178018607203157 9 24.83507419129737 13.972893801219982 25.07148472813709 36.12054727934556 10 16.138885666782663 28.62298227105094 33.881091391821 21.35704067034539 11 30.42671733658858 22.322015455062665 25.72907057885599 21.52219662949277 12 19.85747243257973 28.334557733699366 31.902257867923105 19.905711965797803 13 30.705475555260964 21.722427516418932 29.634263325250448 17.937833603069656 14 20.286472861580158 23.60257252961116 29.486690860081417 26.624263748727266 15 22.336929203881994 29.932446241459115 27.72235755068373 20.00826700397516 16 21.056556249689294 29.082822859646896 27.923877280100456 21.936743610563354 17 18.34961877880333 27.962726675173027 28.757574251136482 24.930080294887162 18 19.419450106145387 27.19761453667033 33.94746678008481 19.435468577099478 19 18.640160700246536 25.70596347420382 35.46425027111722 20.18962555443242 20 23.484367261191295 24.552541505331206 33.77107947923398 18.192011754243513 21 22.767402595728775 25.54936911160087 32.20080902484336 19.48241926782699 22 20.713908267556334 25.349690585742085 33.11202066566874 20.824380481032843 23 19.76292662987942 27.56659172968186 34.237088099749045 18.43339354068968 24 18.274865914350894 26.603366088344625 32.55321538583341 22.568552611471066 25 19.565365488112267 27.571655039466197 33.98125286537304 18.881726607048495 26 21.11252883785073 26.4240328618011 32.27767927338743 20.185759026960742 27 19.588932893653922 27.95306035649383 31.952246544521223 20.50576020533102 28 19.289645255310493 27.597892190166867 32.00637792912471 21.10608462539793 29 18.26888200278758 27.35522156123015 33.21273450028815 21.163161935694124 30 17.67656681819772 27.51080326187622 35.570119475698874 19.242510444227182 31 19.37001379061465 26.786934083071422 34.07165596006798 19.771396166245953 32 20.51551858418811 27.181135764826752 31.899864303297782 20.403481347687354 33 21.41457828153107 27.150111484875435 31.211070052271765 20.224240181321726 34 19.457286839261087 30.06160667104873 31.32669763571051 19.154408853979668 35 18.070032018529872 30.748283537983106 31.52840148548303 19.653282958003988 36 19.052682357403388 26.83701481984744 34.027467074677375 20.0828357480718 37 19.020829535850993 27.125439357199017 33.048775323453434 20.804955783496556 38 19.469991143810887 26.59195062628539 33.782402881115324 20.155655348788397 39 20.585024018500413 25.950383246520587 33.63197655043149 19.832616184547515 40 18.708377292068278 26.81013324790149 32.82460879027403 21.656880669756205 41 19.44071600723961 26.142236657258117 32.74120226909926 21.675845066403006 42 16.79140820771722 27.96079341143719 33.155657189991956 22.09214119085364 43 17.396335636678984 27.778146018489362 32.841455802829195 21.984062542002455 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 121.0 1 165.0 2 209.0 3 574.5 4 940.0 5 940.0 6 1597.0 7 2254.0 8 2542.0 9 2830.0 10 4268.0 11 5706.0 12 5706.0 13 10223.5 14 14741.0 15 24305.5 16 33870.0 17 33268.5 18 32667.0 19 32667.0 20 34658.5 21 36650.0 22 30204.5 23 23759.0 24 25642.0 25 27525.0 26 27525.0 27 29781.0 28 32037.0 29 32520.0 30 33003.0 31 35121.5 32 37240.0 33 37240.0 34 39946.0 35 42652.0 36 45502.0 37 48352.0 38 49530.0 39 50708.0 40 50708.0 41 53055.0 42 55402.0 43 63247.0 44 71092.0 45 90964.5 46 110837.0 47 110837.0 48 112443.0 49 114049.0 50 101275.5 51 88502.0 52 80783.5 53 73065.0 54 73065.0 55 62422.5 56 51780.0 57 40873.0 58 29966.0 59 25372.5 60 20779.0 61 20779.0 62 17855.0 63 14931.0 64 12856.5 65 10782.0 66 8944.5 67 7107.0 68 7107.0 69 6074.0 70 5041.0 71 4168.5 72 3296.0 73 2614.0 74 1932.0 75 1932.0 76 1502.5 77 1073.0 78 856.5 79 640.0 80 502.0 81 364.0 82 364.0 83 266.0 84 168.0 85 129.0 86 90.0 87 71.0 88 52.0 89 52.0 90 37.0 91 22.0 92 15.5 93 9.0 94 6.0 95 3.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1086246.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.05074281906275 #Duplication Level Percentage of deduplicated Percentage of total 1 76.29861176549613 33.610105243333855 2 12.828577789496077 11.302167618788642 3 4.4905844361160625 5.934407403079038 4 2.0420248737354516 3.5981085017219785 5 1.090301591620752 2.4014297503850264 6 0.6379946133142765 1.686248197863275 7 0.45022630676934394 1.3882962274910977 8 0.2971788773639571 1.047276023841397 9 0.2246486232547232 0.8906344854885297 >10 1.3988152278621757 11.715249185992233 >50 0.1349666248587712 4.067430984341646 >100 0.08687979986800526 7.379745760717765 >500 0.0105436649693752 3.32467090009088 >1k 0.007591438777950144 6.4990437499359714 >5k 4.2174659877500795E-4 1.0845053996412792 >10k+ 6.32619898162512E-4 4.070680567287378 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 15518 1.428589840607008 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 15257 1.404562134175868 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 13047 1.2011091410233041 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6488 0.5972864341963054 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5187 0.47751614275219423 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 4454 0.4100360323536289 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4101 0.37753878955595693 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3891 0.3582061521975685 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 3789 0.3488160140520656 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 3275 0.30149708261296243 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3272 0.30122090207927116 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 2871 0.264304770742539 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2776 0.25555905384231564 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2590 0.2384358607534573 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2434 0.22407447300151162 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2427 0.223430051756232 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2076 0.1911169293143542 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2018 0.18577743899632312 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1966 0.18099030974567454 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1787 0.16451153790209586 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1693 0.1558578811797696 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1601 0.1473883448132375 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1502 0.13827438720142582 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1501 0.13818232702352873 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1389 0.1278715870990549 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 1334 0.12280827731471508 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 1321 0.12161149500205294 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1309 0.12050677286728789 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 1294 0.11912587019883157 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 1207 0.11111663472178493 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTC 1202 0.11065633383229949 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1174 0.10807864885118104 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 1163 0.10706598689431308 No Hit GCCGAGGGGAGAAGAGTAAAAAAAAAAAAAAAAAAAAAAAAAA 1124 0.10347563995632665 No Hit ACGCACATGCGAGGGTCCAAAAAAAAAAAAAAAAAAAAAAAAA 1111 0.10227885764366451 No Hit GGGGAGAAGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1097 0.1009900151531053 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.206017789708776E-5 0.0 0.0 0.0 3 0.0 9.206017789708776E-5 0.0 0.0 0.0 4 0.0 9.206017789708776E-5 0.0 0.0 0.0 5 0.0 9.206017789708776E-5 0.0 0.0 0.0 6 0.0 9.206017789708776E-5 0.0 0.0 0.0 7 0.0 9.206017789708776E-5 0.0 0.0 0.0 8 0.0 9.206017789708776E-5 0.0 0.0 0.0 9 0.0 9.206017789708776E-5 0.0 1.8412035579417553E-4 0.0 10 0.0 1.8412035579417553E-4 0.0 2.7618053369126333E-4 0.0 11 0.0 1.8412035579417553E-4 0.0 3.6824071158835105E-4 0.0 12 0.0 1.8412035579417553E-4 0.0 5.523610673825267E-4 0.0 13 0.0 1.8412035579417553E-4 0.0 9.206017789708777E-4 0.0 14 0.0 1.8412035579417553E-4 0.0 0.0011047221347650533 0.0 15 0.0 1.8412035579417553E-4 0.0 0.0014729628463534042 0.0 16 0.0 1.8412035579417553E-4 0.0 0.002301504447427194 0.0 17 0.0 1.8412035579417553E-4 0.0 0.004050647827471862 0.0 18 0.0 1.8412035579417553E-4 0.0 0.004787129250648564 0.0 19 0.0 1.8412035579417553E-4 0.0 0.005339490318031091 0.0 20 0.0 1.8412035579417553E-4 0.0 0.0066283328085903195 0.0 21 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.009942499212885479 0.0 22 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.015374049708813658 0.0 23 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.02476418785431661 0.0 24 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.04170326058738076 0.0 25 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.050172796953912836 0.0 26 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.06379770328268182 0.0 27 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.16966690786433275 0.0 28 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.28317710721144196 0.0 29 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.4039600606124211 0.0 30 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.6486560134628804 0.0 31 9.206017789708776E-5 1.8412035579417553E-4 0.0 0.9926848982642974 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3185 0.0 30.029825 1 CGCGGTA 25 0.0054962127 29.599998 17 ACGTTTA 70 6.5920176E-9 26.428572 26 ATCACGT 70 6.5920176E-9 26.428572 23 GTATTGG 270 0.0 24.666668 1 GTGACGG 40 0.0019311195 23.125 19 TCACGTT 80 2.7253918E-8 23.125 24 TACCGTG 75 3.7403697E-7 22.199999 7 TTGGACC 610 0.0 21.532785 4 GTTATCA 130 1.8189894E-12 21.346153 1 GACCCTC 610 0.0 21.229507 7 TAGCCGA 45 0.0038256743 20.555557 22 ATTGGAC 335 0.0 20.432837 3 GGACCCT 630 0.0 20.261904 6 CGAACAA 55 5.1428436E-4 20.181818 14 CGAATTA 110 1.7553248E-9 20.181818 15 GGTGACG 55 5.1428436E-4 20.181818 18 ACGTAGA 65 6.901684E-5 19.923077 27 ACGACGC 65 6.901684E-5 19.923077 27 CACGTTT 95 1.6759077E-7 19.473684 25 >>END_MODULE