##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088175_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1367002 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.095977913711902 31.0 31.0 33.0 30.0 34.0 2 31.24571873340346 31.0 31.0 34.0 28.0 34.0 3 31.287878145021 31.0 31.0 34.0 28.0 34.0 4 35.2474261193473 37.0 35.0 37.0 33.0 37.0 5 35.12368379856065 37.0 35.0 37.0 32.0 37.0 6 35.18134355326474 37.0 35.0 37.0 32.0 37.0 7 35.00889757293698 37.0 35.0 37.0 32.0 37.0 8 35.07408328590595 37.0 35.0 37.0 32.0 37.0 9 36.550734380783645 39.0 35.0 39.0 32.0 39.0 10 36.41243319322137 38.0 35.0 39.0 32.0 39.0 11 36.45123708670506 38.0 35.0 39.0 32.0 39.0 12 36.28594032781225 38.0 35.0 39.0 32.0 39.0 13 36.33660301886903 38.0 35.0 39.0 32.0 39.0 14 37.24000915872837 39.0 36.0 41.0 32.0 41.0 15 37.306213158429905 39.0 36.0 41.0 32.0 41.0 16 37.27054239862122 39.0 36.0 41.0 32.0 41.0 17 37.394666576932586 39.0 36.0 41.0 32.0 41.0 18 37.425083503901234 39.0 36.0 41.0 32.0 41.0 19 37.52960419955494 39.0 36.0 41.0 32.0 41.0 20 37.493893205715864 39.0 36.0 41.0 32.0 41.0 21 37.37533668568151 39.0 36.0 41.0 32.0 41.0 22 37.3383316191198 39.0 36.0 41.0 31.0 41.0 23 37.21554467367275 39.0 36.0 41.0 31.0 41.0 24 37.139469437498995 39.0 36.0 41.0 31.0 41.0 25 37.051765835017065 39.0 36.0 40.0 31.0 41.0 26 36.76333172884897 39.0 35.0 40.0 30.0 41.0 27 36.60350387197678 38.0 35.0 40.0 30.0 41.0 28 36.441264899392976 38.0 35.0 40.0 30.0 41.0 29 36.29766013509856 38.0 35.0 40.0 30.0 41.0 30 36.109437294166355 38.0 35.0 40.0 30.0 41.0 31 35.80925046195982 38.0 34.0 40.0 29.0 41.0 32 35.50487343837098 38.0 34.0 40.0 28.0 41.0 33 35.60991863947529 38.0 34.0 40.0 29.0 41.0 34 35.563367134795705 38.0 34.0 40.0 28.0 41.0 35 35.46014343797595 38.0 34.0 40.0 27.0 41.0 36 35.348056550026996 38.0 34.0 40.0 27.0 41.0 37 35.193426198352306 38.0 34.0 40.0 26.0 41.0 38 35.04330059502473 38.0 34.0 40.0 25.0 41.0 39 34.928016930479984 38.0 34.0 40.0 24.0 41.0 40 34.728625122713794 38.0 33.0 40.0 24.0 41.0 41 34.54712721707796 38.0 33.0 40.0 23.0 41.0 42 34.29434850863422 38.0 33.0 40.0 21.0 41.0 43 33.95885155983678 38.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 2.0 15 5.0 16 17.0 17 32.0 18 106.0 19 237.0 20 480.0 21 1035.0 22 1838.0 23 3211.0 24 5279.0 25 8524.0 26 12646.0 27 18469.0 28 25793.0 29 34385.0 30 44500.0 31 53470.0 32 65726.0 33 79891.0 34 97386.0 35 116830.0 36 145470.0 37 191997.0 38 228994.0 39 230678.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.18545693422541 23.265218339109964 14.625435807701818 21.92388891896281 2 17.175614958866188 23.5376393011861 36.54969049057719 22.73705524937052 3 19.938815012706637 26.001863932898416 32.87405578045972 21.185265273935226 4 13.138971267050085 16.082419777001057 35.27141876895571 35.50719018699314 5 10.858945341703963 41.133224384455914 34.52679659576211 13.481033678078013 6 31.08934734550498 36.18948618948619 15.511096545579303 17.210069919429525 7 23.919131061988207 36.174563021853665 21.36946398030142 18.536841935856714 8 27.752263712854848 33.64384251083759 20.307870800481638 18.29602297582593 9 25.154388947492397 13.942554582948672 24.82066595367088 36.08239051588805 10 16.447744772867924 28.47852453763784 33.748450989830296 21.325279699663934 11 30.5355807818862 22.272169316504293 25.509472553807527 21.68277734780198 12 20.15073862364503 28.434340257000358 31.582982321898577 19.83193879745604 13 30.743627295351434 21.496822974655487 29.565648038554443 18.193901691438636 14 20.66471007357707 23.372314012708102 29.48115657475263 26.481819338962197 15 22.73083726285697 29.617440208573214 27.486865417899903 20.164857110669917 16 21.146421146421147 28.52183098488517 28.365064571961124 21.96668329673256 17 18.705824863460332 27.881378373989214 28.806322156075854 24.606474606474606 18 19.515187249177394 26.98394003812723 33.68992876382039 19.810943948874986 19 18.93552460054923 25.63792883989928 35.322625716714384 20.103920842837102 20 23.362657845416464 24.34261251995242 33.8405503430134 18.454179291617713 21 22.7015029970695 25.397841407693623 32.50821871511527 19.392436880121608 22 20.825426736756786 25.24619568954544 33.33857594941339 20.58980162428438 23 20.047446894737536 27.209177455482873 34.176394767527775 18.56698088225182 24 18.358641757656535 26.6265155427717 32.670544739510255 22.344297960061507 25 19.690680774424617 27.4148099271252 33.99373226959434 18.90077702885585 26 20.91438052029185 26.401936500458667 32.531042383259134 20.152640595990352 27 19.67209996766647 27.828781523362807 32.046551504679584 20.45256700429114 28 19.548471765220533 27.467041013839044 31.992125834490366 20.992361386450057 29 18.529453504822964 27.428489497455015 32.99110023247954 21.05095676524248 30 17.94437755028888 27.600691147489176 35.239158391867754 19.215772910354193 31 19.632524312327266 26.8314164865889 33.82423727251314 19.711821928570696 32 20.635595266137138 27.299960058580748 31.780129070769465 20.28431560451265 33 21.456662097056185 27.233171568146936 31.12965452866931 20.18051180612757 34 19.67422139835933 29.883570031353283 31.308878845824662 19.13332972446273 35 18.172614231727533 30.746333948304393 31.451526771723813 19.629525048244258 36 19.138157808108545 27.116785491169725 33.78166235309092 19.9633943476308 37 19.289291456779143 27.334780783056644 32.717435673100695 20.658492087063514 38 19.662516953157347 27.029221610502397 33.31999514265524 19.988266293685015 39 20.81079618025431 26.255118865956305 33.1189712963112 19.81511365747819 40 18.74042612958869 27.053435181514 32.54230791176604 21.66383077713127 41 19.66741818958568 26.501936354153106 32.334919773343415 21.4957256829178 42 17.09507374532005 28.299592831612536 32.67361715637578 21.931716266691637 43 17.655277753799922 27.916418556812644 32.40324447220999 22.025059217177446 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 170.0 1 209.0 2 248.0 3 699.5 4 1151.0 5 1151.0 6 2082.5 7 3014.0 8 3276.0 9 3538.0 10 5388.0 11 7238.0 12 7238.0 13 13186.0 14 19134.0 15 30713.0 16 42292.0 17 41296.0 18 40300.0 19 40300.0 20 43308.0 21 46316.0 22 37551.0 23 28786.0 24 31383.0 25 33980.0 26 33980.0 27 36343.5 28 38707.0 29 39283.0 30 39859.0 31 42471.5 32 45084.0 33 45084.0 34 48612.5 35 52141.0 36 56716.0 37 61291.0 38 62968.5 39 64646.0 40 64646.0 41 67600.5 42 70555.0 43 79904.0 44 89253.0 45 113821.5 46 138390.0 47 138390.0 48 140256.5 49 142123.0 50 127248.0 51 112373.0 52 102263.0 53 92153.0 54 92153.0 55 79001.0 56 65849.0 57 52539.5 58 39230.0 59 33523.5 60 27817.0 61 27817.0 62 23816.5 63 19816.0 64 17014.5 65 14213.0 66 11838.5 67 9464.0 68 9464.0 69 8211.5 70 6959.0 71 5806.0 72 4653.0 73 3642.0 74 2631.0 75 2631.0 76 2156.0 77 1681.0 78 1292.5 79 904.0 80 727.0 81 550.0 82 550.0 83 406.0 84 262.0 85 186.0 86 110.0 87 89.5 88 69.0 89 69.0 90 55.0 91 41.0 92 24.0 93 7.0 94 5.5 95 4.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1367002.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.341753385120406 #Duplication Level Percentage of deduplicated Percentage of total 1 72.37684975720023 29.19809023696883 2 13.973325600759148 11.2741691071163 3 5.42600046480236 6.566831178558165 4 2.6186698520840666 4.225669334793006 5 1.4965703753188788 3.0187136502295644 6 0.8879977419083289 2.1494031546365764 7 0.6100761005688818 1.7228077716714023 8 0.4100007378626371 1.3232118923657523 9 0.29769927287764547 1.0808739584423672 >10 1.6385624577471323 12.198376504689515 >50 0.14969471153359765 4.109288502823455 >100 0.09299432667843327 7.3012311842047355 >500 0.011144700340481121 3.0952156768984183 >1k 0.009135000279082888 6.658675316062242 >5k 7.30800022326631E-4 1.8583823806957191 >10k+ 5.481000167449732E-4 4.219060149843937 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 20511 1.5004367221115988 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 20171 1.475564776057387 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16561 1.2114832311876647 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7935 0.5804673292358021 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6803 0.4976583794317785 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 5455 0.3990484286050789 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5021 0.3673001209947023 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 4525 0.33101634086855763 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4001 0.2926842828320661 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 3836 0.280614073717522 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 3738 0.2734451010313079 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 3464 0.2534012386229135 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 3457 0.2528891691453268 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3001 0.2195315003196777 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2912 0.2130209026760751 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2776 0.20307212425439025 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2765 0.202267443646754 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2478 0.1812725950656985 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2356 0.1723479555991871 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2072 0.15157256536566882 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2000 0.14630556502477685 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1924 0.14074595355383532 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1920 0.14045334242378577 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 1700 0.12435973027106033 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1699 0.12428657748854792 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 1655 0.12106785505800284 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 1613 0.11799543819248252 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1594 0.11660553532474714 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1481 0.10833927090084725 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 1476 0.10797350698828531 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 1470 0.10753459029321098 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1402 0.10256020108236857 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 7.315278251238843E-5 0.0 0.0 0.0 0.0 6 1.4630556502477686E-4 0.0 0.0 0.0 0.0 7 1.4630556502477686E-4 0.0 0.0 0.0 0.0 8 1.4630556502477686E-4 0.0 0.0 0.0 0.0 9 1.4630556502477686E-4 0.0 0.0 0.0 0.0 10 1.4630556502477686E-4 0.0 0.0 0.0 0.0 11 1.4630556502477686E-4 0.0 0.0 1.4630556502477686E-4 0.0 12 1.4630556502477686E-4 0.0 0.0 1.4630556502477686E-4 0.0 13 1.4630556502477686E-4 0.0 0.0 2.1945834753716526E-4 0.0 14 1.4630556502477686E-4 0.0 0.0 2.926111300495537E-4 0.0 15 1.4630556502477686E-4 0.0 0.0 7.315278251238842E-4 0.0 16 1.4630556502477686E-4 0.0 0.0 0.0016825139977849337 0.0 17 1.4630556502477686E-4 0.0 0.0 0.0023408890403964298 0.0 18 1.4630556502477686E-4 0.0 0.0 0.0029261113004955368 0.0 19 1.4630556502477686E-4 0.0 0.0 0.0037307919081318096 0.0 20 1.4630556502477686E-4 0.0 0.0 0.004462319733255694 0.0 21 1.4630556502477686E-4 0.0 0.0 0.005486458688429132 0.0 22 1.4630556502477686E-4 0.0 0.0 0.008485722771437058 0.0 23 1.4630556502477686E-4 0.0 0.0 0.014191639807403355 0.0 24 1.4630556502477686E-4 0.0 0.0 0.024506182141650124 0.0 25 1.4630556502477686E-4 0.0 0.0 0.02977318248254209 0.0 26 1.4630556502477686E-4 0.0 0.0 0.04038033594683841 0.0 27 1.4630556502477686E-4 0.0 0.0 0.1232624385333745 0.0 28 1.4630556502477686E-4 0.0 0.0 0.2122893748509512 0.0 29 1.4630556502477686E-4 0.0 0.0 0.31609317323603037 0.0 30 1.4630556502477686E-4 0.0 0.0 0.5070219355933642 0.0 31 1.4630556502477686E-4 0.0 0.0 0.7981700099926701 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4015 0.0 30.503113 1 ATTGGAC 330 0.0 23.545452 3 GGTAACG 40 0.0019313729 23.125002 28 ACGTTTA 80 2.726847E-8 23.125002 26 TTGCGTG 60 3.72695E-5 21.583334 7 GTATTGG 390 0.0 21.346155 1 TATTGGA 375 0.0 20.720001 2 AACGCGG 45 0.0038261726 20.555557 6 ATCACGT 100 1.2903911E-8 20.35 23 TACCCCG 85 1.2456621E-6 19.588234 5 ACCGCCG 135 5.638867E-11 19.185186 12 GGACCCT 685 0.0 18.90511 6 AGCCGTC 90 2.1528213E-6 18.5 12 AGATCGG 50 0.007035546 18.5 17 TACTTCG 50 0.007035546 18.5 7 CAACGCG 50 0.007035546 18.5 5 TCCGACG 90 2.1528213E-6 18.5 23 TTCGTTC 50 0.007035546 18.5 34 TATCGGC 60 9.238033E-4 18.5 2 TTGGACC 730 0.0 18.246574 4 >>END_MODULE