##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088172_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2500199 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.997361809999923 31.0 31.0 33.0 28.0 34.0 2 31.12960848316474 31.0 31.0 34.0 28.0 34.0 3 31.183684978675696 31.0 31.0 34.0 28.0 34.0 4 35.16242507096435 35.0 35.0 37.0 33.0 37.0 5 35.03280778850004 35.0 35.0 37.0 32.0 37.0 6 35.093626547326835 37.0 35.0 37.0 32.0 37.0 7 34.92041913463688 36.0 35.0 37.0 32.0 37.0 8 34.989482437198 37.0 35.0 37.0 32.0 37.0 9 36.4507301218823 38.0 35.0 39.0 32.0 39.0 10 36.30415458929469 38.0 35.0 39.0 32.0 39.0 11 36.34033010972327 38.0 35.0 39.0 32.0 39.0 12 36.166076780288286 38.0 35.0 39.0 31.0 39.0 13 36.219313742626085 38.0 35.0 39.0 32.0 39.0 14 37.106395130947575 39.0 36.0 41.0 31.0 41.0 15 37.16689191540353 39.0 36.0 41.0 31.0 41.0 16 37.14611836897783 39.0 36.0 40.0 31.0 41.0 17 37.259450147768234 39.0 36.0 40.0 32.0 41.0 18 37.26842623327183 39.0 36.0 40.0 32.0 41.0 19 37.375060145212444 39.0 36.0 41.0 32.0 41.0 20 37.34146121968691 39.0 36.0 41.0 31.0 41.0 21 37.22409856175448 39.0 36.0 41.0 31.0 41.0 22 37.175886399442604 39.0 36.0 40.0 31.0 41.0 23 37.05052997781377 39.0 36.0 40.0 31.0 41.0 24 36.98017357818318 39.0 36.0 40.0 31.0 41.0 25 36.88800971442673 39.0 35.0 40.0 31.0 41.0 26 36.610229425737714 38.0 35.0 40.0 30.0 41.0 27 36.44589530673358 38.0 35.0 40.0 30.0 41.0 28 36.29114962448989 38.0 35.0 40.0 30.0 41.0 29 36.14432291189621 38.0 35.0 40.0 30.0 41.0 30 35.95693862768523 38.0 35.0 40.0 29.0 41.0 31 35.67376276848363 38.0 34.0 40.0 29.0 41.0 32 35.39990096788296 38.0 34.0 40.0 27.0 41.0 33 35.53230682837646 38.0 34.0 40.0 28.0 41.0 34 35.49685485035391 38.0 34.0 40.0 27.0 41.0 35 35.39919222429894 38.0 34.0 40.0 27.0 41.0 36 35.2961360275722 38.0 34.0 40.0 26.0 41.0 37 35.14383015111997 38.0 34.0 40.0 26.0 41.0 38 35.0142764635935 38.0 34.0 40.0 25.0 41.0 39 34.92739417942332 38.0 33.0 40.0 25.0 41.0 40 34.75222492289614 38.0 33.0 40.0 24.0 41.0 41 34.59679729493532 38.0 33.0 40.0 23.0 41.0 42 34.35495334571368 38.0 33.0 40.0 22.0 41.0 43 34.028114962049024 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 0.0 13 1.0 14 6.0 15 9.0 16 20.0 17 77.0 18 207.0 19 476.0 20 999.0 21 2021.0 22 3589.0 23 6276.0 24 10503.0 25 15847.0 26 24568.0 27 35402.0 28 49175.0 29 65815.0 30 83477.0 31 101700.0 32 123264.0 33 149309.0 34 179845.0 35 217043.0 36 269354.0 37 349194.0 38 424071.0 39 387949.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.646244558933105 23.056444707001322 14.428971453872272 21.868339280193297 2 17.37665681811728 23.402257180328444 36.87198498999479 22.34910101155948 3 20.023286146422745 26.50237041131526 32.50461263283443 20.96973080942757 4 12.767663693969961 15.806141831110242 35.324028207354694 36.1021662675651 5 10.865855077935796 41.0862095377208 34.61368475069385 13.434250633649562 6 31.386141663123617 36.16792103348573 15.519324661756926 16.926612641633724 7 24.098361770403077 35.862065379595784 21.264707329296588 18.77486552070455 8 27.878300887249374 33.6658801959364 20.200872010587958 18.254946906226262 9 25.17003646509738 13.632674839082808 24.221791945361147 36.97549675045867 10 16.194030955135972 27.93241657964026 33.66744007177029 22.20611239345348 11 31.07556638491576 21.687953638890345 25.73983110944369 21.496648866750206 12 20.328261870355117 27.44453541498097 32.18827781308608 20.038924901577833 13 31.41465939311231 20.967251006819858 29.15095958361714 18.467130016450692 14 20.759867514545842 22.563923911656634 29.045008017361816 27.631200556435708 15 22.585962157412272 29.107923009328456 27.72007348215082 20.586041351108452 16 21.320262907072596 28.702675267048743 27.579924637998815 22.397137187879846 17 18.94997158226205 27.001130709995486 28.33666440151364 25.712233306228825 18 20.044684443118328 26.411457647971222 33.40938061330318 20.13447729560727 19 19.270466070900756 24.64167852238962 34.785111105156034 21.3027443015536 20 24.25842902904929 23.464972188213817 33.36698398807455 18.909614794662343 21 23.658236804350373 24.50088972917756 31.893621267747086 19.947252198724982 22 21.608879933157322 24.06488443519896 32.90090108827337 21.425334543370347 23 20.545884547590013 26.316705190266852 34.03161108375773 19.1057991783854 24 19.080841165043264 25.26122920615519 32.412060000024 23.245869628777548 25 20.36609885853086 26.44413504685027 33.63180290848848 19.557963186130383 26 22.17747467301603 25.07200426846023 32.01637149682885 20.73414956169489 27 20.305823656436946 26.85110265222888 31.715195470440555 21.127878220893617 28 20.113998925685518 26.26234951697845 31.737953658888753 21.885697898447283 29 19.24042846189443 26.094282895081548 32.78307046759078 21.882218175433234 30 18.480368962630575 26.35898182504673 35.12308420249748 20.03756500982522 31 20.161635133843344 25.703753981183098 33.684358725045485 20.45025215992807 32 21.442533174359323 25.91857688128025 31.367663134014535 21.271226810345897 33 22.459692208500204 25.861341437221597 30.789909123233787 20.889057231044408 34 20.2883450477342 29.153999341652405 30.93689742296513 19.620758187648264 35 18.743428023129358 30.128321785585864 31.149400507719587 19.97884968356519 36 19.957091415523323 25.907657750443065 33.62160372034386 20.51364711368975 37 20.007047439023854 26.550766558981902 32.417859538380746 21.024326463613498 38 20.504607833216475 25.924336422820744 33.023571323722635 20.54748442024015 39 21.47485060189209 25.373900237541093 32.959976385879685 20.191272774687135 40 19.392216379576187 26.350902468163532 31.928458494703822 22.32842265755646 41 20.609159510902934 25.79026709473926 31.770191092789013 21.830382301568797 42 17.89805531479694 27.648439184240935 32.26135199638109 22.192153504581036 43 18.625237431100484 27.54720724230351 31.65983987674581 22.167715449850192 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 143.0 1 245.5 2 348.0 3 1045.5 4 1743.0 5 1743.0 6 3193.0 7 4643.0 8 5201.0 9 5759.0 10 8710.5 11 11662.0 12 11662.0 13 21526.5 14 31391.0 15 52228.0 16 73065.0 17 71546.5 18 70028.0 19 70028.0 20 73077.0 21 76126.0 22 61340.0 23 46554.0 24 50857.5 25 55161.0 26 55161.0 27 59632.0 28 64103.0 29 66679.0 30 69255.0 31 73268.0 32 77281.0 33 77281.0 34 83048.0 35 88815.0 36 96258.5 37 103702.0 38 107974.0 39 112246.0 40 112246.0 41 117765.5 42 123285.0 43 142786.0 44 162287.0 45 210342.0 46 258397.0 47 258397.0 48 261358.0 49 264319.0 50 237883.0 51 211447.0 52 196108.0 53 180769.0 54 180769.0 55 155258.0 56 129747.0 57 105111.5 58 80476.0 59 69509.0 60 58542.0 61 58542.0 62 50909.5 63 43277.0 64 37759.0 65 32241.0 66 27379.0 67 22517.0 68 22517.0 69 18981.5 70 15446.0 71 13094.5 72 10743.0 73 8534.5 74 6326.0 75 6326.0 76 4976.5 77 3627.0 78 2917.5 79 2208.0 80 1714.5 81 1221.0 82 1221.0 83 924.0 84 627.0 85 471.0 86 315.0 87 261.0 88 207.0 89 207.0 90 160.0 91 113.0 92 69.5 93 26.0 94 17.0 95 8.0 96 8.0 97 5.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2500199.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.04923081033179 #Duplication Level Percentage of deduplicated Percentage of total 1 74.11238141813365 31.16368632154447 2 13.79689396864196 11.602975579062008 3 5.032184625177518 6.347984783528771 4 2.3624154180816292 3.9735100473920357 5 1.3041947781521603 2.7420193624074822 6 0.7345295207400683 1.8531840812760911 7 0.4870888936980304 1.4337199321380354 8 0.32282875862437205 1.0859760786887287 9 0.23436584072984512 0.8869412997816045 >10 1.38105359804421 10.91005771100983 >50 0.13341877360573565 3.9283707631213853 >100 0.08235244066278793 6.621285492611275 >500 0.007187631930072788 2.0738518158399732 >1k 0.007475137207275691 6.213616757437321 >5k 9.583509240097041E-4 2.9822475104684347 >10k+ 6.708456468067928E-4 6.180572463692519 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 35438 1.4174071743889187 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34864 1.394449001859452 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 31403 1.256020020806344 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 18846 0.7537799991120707 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11766 0.470602540037813 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10910 0.4363652653248801 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10145 0.40576770089100905 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9803 0.3920887897323373 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 9802 0.39204879291608385 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8669 0.34673240010095197 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7827 0.31305508081556704 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7451 0.2980162779042788 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7172 0.2868571661695729 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6032 0.24126079564066702 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5924 0.236941139485297 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5782 0.23126159157731047 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5543 0.22170235249274156 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4440 0.17758586416521244 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4311 0.17242627486852047 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4268 0.17070641176962315 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3809 0.15234787310930048 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3581 0.14322859900351934 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3575 0.14298861810599875 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3571 0.14282863084098507 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3456 0.13822899697184104 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2902 0.11607076076744292 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2799 0.11195108869334001 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2771 0.11083117783824409 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2596 0.10383173499389448 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2585 0.10339177001510681 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2579 0.10315178911758623 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2527 0.10107195467240807 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 2514 0.10055199606111354 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.999681625342623E-5 0.0 0.0 0.0 0.0 7 3.999681625342623E-5 0.0 0.0 0.0 0.0 8 3.999681625342623E-5 0.0 0.0 0.0 0.0 9 3.999681625342623E-5 0.0 0.0 0.0 0.0 10 3.999681625342623E-5 0.0 0.0 1.9998408126713113E-4 0.0 11 3.999681625342623E-5 0.0 0.0 4.399649787876885E-4 0.0 12 3.999681625342623E-5 0.0 0.0 0.0011199108550959344 0.0 13 3.999681625342623E-5 0.0 0.0 0.001239901303856213 0.0 14 3.999681625342623E-5 0.0 0.0 0.0015198790176301966 0.0 15 3.999681625342623E-5 0.0 0.0 0.001919847180164459 0.0 16 3.999681625342623E-5 0.0 0.0 0.0027197835052329834 0.0 17 3.999681625342623E-5 0.0 0.0 0.004319656155370033 0.0 18 3.999681625342623E-5 0.0 0.0 0.004919608399171426 0.0 19 3.999681625342623E-5 0.0 0.0 0.005879531989253655 0.0 20 3.999681625342623E-5 0.0 0.0 0.007759382353164688 0.0 21 3.999681625342623E-5 0.0 0.0 0.011919051243521016 0.0 22 3.999681625342623E-5 0.0 0.0 0.019998408126713114 0.0 23 3.999681625342623E-5 0.0 0.0 0.0343172683454397 0.0 24 3.999681625342623E-5 0.0 0.0 0.05379571786085827 0.0 25 3.999681625342623E-5 0.0 0.0 0.061035141602728424 0.0 26 3.999681625342623E-5 0.0 0.0 0.0690745016696671 0.0 27 3.999681625342623E-5 0.0 0.0 0.13910892692941643 0.0 28 3.999681625342623E-5 0.0 0.0 0.2110631993693302 0.0 29 3.999681625342623E-5 0.0 0.0 0.3050557175648818 0.0 30 3.999681625342623E-5 0.0 0.0 0.4962005024400058 0.0 31 3.999681625342623E-5 0.0 0.0 0.7646591331330026 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8165 0.0 29.590937 1 GACGTCG 35 8.872325E-4 26.42857 21 GTATTGG 915 0.0 24.666668 1 ATTGGAC 990 0.0 22.79798 3 TATTGGA 1140 0.0 19.798244 2 TTGGACC 1685 0.0 19.65282 4 GGACCCT 1755 0.0 19.079773 6 CGTTCCG 50 0.0070371386 18.5 24 CGCCGTT 80 1.617909E-5 18.5 25 TGGACCC 1840 0.0 18.19837 5 ACCGACC 260 0.0 17.076923 8 GTATCAA 14420 0.0 16.832178 2 CGTCTGT 620 0.0 16.709677 34 GACCCTC 1945 0.0 16.455013 7 TACCCCG 125 1.6598824E-7 16.279999 5 TTTTTAC 1745 0.0 16.008595 1 TATACCG 220 0.0 15.977273 5 CCGTTAT 95 7.064982E-5 15.578948 9 TCACGTT 155 7.219569E-9 15.516129 24 TGCGACG 85 5.3672824E-4 15.235294 22 >>END_MODULE