##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088171_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2154254 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.109386822538102 31.0 31.0 33.0 30.0 34.0 2 31.245316011946596 31.0 31.0 34.0 28.0 34.0 3 31.281907333118564 31.0 31.0 34.0 28.0 34.0 4 35.25113380316341 37.0 35.0 37.0 33.0 37.0 5 35.14163975093002 37.0 35.0 37.0 32.0 37.0 6 35.204810574797584 37.0 35.0 37.0 32.0 37.0 7 35.032763081790726 37.0 35.0 37.0 32.0 37.0 8 35.10743672751681 37.0 35.0 37.0 32.0 37.0 9 36.58402444651374 39.0 35.0 39.0 32.0 39.0 10 36.43938412090682 38.0 35.0 39.0 32.0 39.0 11 36.47494167354453 38.0 35.0 39.0 32.0 39.0 12 36.30675723475505 38.0 35.0 39.0 32.0 39.0 13 36.35524223234586 38.0 35.0 39.0 32.0 39.0 14 37.26527326861178 39.0 36.0 41.0 32.0 41.0 15 37.32841484801699 39.0 36.0 41.0 32.0 41.0 16 37.29841884940216 39.0 36.0 41.0 32.0 41.0 17 37.43489068605652 39.0 36.0 41.0 32.0 41.0 18 37.45401656443484 39.0 36.0 41.0 32.0 41.0 19 37.55797459352518 39.0 36.0 41.0 32.0 41.0 20 37.524576953321194 39.0 36.0 41.0 32.0 41.0 21 37.40357311626206 39.0 36.0 41.0 32.0 41.0 22 37.36895602839777 39.0 36.0 41.0 32.0 41.0 23 37.24499525125635 39.0 36.0 41.0 31.0 41.0 24 37.17110331465092 39.0 36.0 41.0 31.0 41.0 25 37.08303477677191 39.0 36.0 40.0 31.0 41.0 26 36.80713230658966 39.0 35.0 40.0 31.0 41.0 27 36.6480674980759 38.0 35.0 40.0 30.0 41.0 28 36.490291766894714 38.0 35.0 40.0 30.0 41.0 29 36.34802720570555 38.0 35.0 40.0 30.0 41.0 30 36.160931812126144 38.0 35.0 40.0 30.0 41.0 31 35.87298526543295 38.0 35.0 40.0 29.0 41.0 32 35.586961890287775 38.0 34.0 40.0 28.0 41.0 33 35.70023590532964 38.0 34.0 40.0 29.0 41.0 34 35.654345773525314 38.0 34.0 40.0 29.0 41.0 35 35.55270177054331 38.0 34.0 40.0 27.0 41.0 36 35.44181837424927 38.0 34.0 40.0 27.0 41.0 37 35.294773968157884 38.0 34.0 40.0 26.0 41.0 38 35.14781451026666 38.0 34.0 40.0 25.0 41.0 39 35.05435199377604 38.0 34.0 40.0 25.0 41.0 40 34.86377279559421 38.0 34.0 40.0 24.0 41.0 41 34.70087789090794 38.0 33.0 40.0 23.0 41.0 42 34.44930820599614 38.0 33.0 40.0 22.0 41.0 43 34.119505870709766 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 4.0 15 4.0 16 13.0 17 38.0 18 135.0 19 350.0 20 748.0 21 1421.0 22 2697.0 23 4779.0 24 8107.0 25 12682.0 26 19431.0 27 28055.0 28 39886.0 29 53509.0 30 68241.0 31 83507.0 32 101723.0 33 124208.0 34 151902.0 35 182036.0 36 229062.0 37 303406.0 38 369240.0 39 369065.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.68401404848267 23.17475098108208 14.460736756204238 21.680498214231005 2 17.180425335174032 23.374773819614585 37.24811466057392 22.196686184637464 3 19.812659045776403 26.514932779514393 32.77157661074321 20.900831563965994 4 12.5037716072478 15.642445134139244 35.46174220867177 36.392041049941184 5 10.634539845347856 41.309799123037486 34.563333757300676 13.492327274313986 6 30.999037253731455 36.1794384506191 15.469345768883336 17.35217852676611 7 23.86775189926536 36.16295942818256 21.269265369821756 18.70002330273032 8 27.810833819967378 33.66529666418166 20.17519753938022 18.34867197647074 9 25.050342253049084 13.697224189905183 24.60921506934651 36.64321848769922 10 16.361719648657957 28.083689295691222 33.49730347489201 22.057287580758814 11 30.641837035001444 21.919235150543994 25.865659295514824 21.573268518939734 12 20.3134820685026 27.860735085092102 32.04208974429199 19.783693102113308 13 31.36222562427643 21.140032698094096 29.46286742417561 18.034874253453864 14 20.707493173971127 22.894050562282814 29.228029749509577 27.170426514236485 15 22.56818369607298 29.21716752063591 27.913189438199954 20.301459345091153 16 21.119607994229092 28.751345013169292 27.839057047126293 22.289989945475323 17 18.64501586163934 27.330528340669208 28.47960361220172 25.544852185489734 18 19.796040763995332 26.602666166570888 33.70368582349156 19.897607245942215 19 18.926923194757908 24.74856725344365 35.34778164506135 20.97672790673709 20 24.161867634921418 23.355834548757944 33.80567008347205 18.676627732848587 21 23.39241333658891 24.512197725987743 32.29614520850374 19.799243728919617 22 21.29646736178742 24.192365431374387 33.31519867202289 21.1959685348153 23 20.222127938488217 26.517393027934492 34.50814063708365 18.752338396493634 24 18.520053809810726 25.522663529927296 32.92118756655436 23.036095093707612 25 19.990121870494377 26.642215820418574 34.13585398936244 19.2318083197246 26 21.68811105839887 25.277427824202718 32.57373550194174 20.460725615456674 27 20.036263133316684 27.028057044341104 32.097561383198084 20.83811843914413 28 19.779329642651238 26.447670516104417 32.152429564944526 21.620570276299826 29 18.767285566140295 26.332410198611676 33.219898860580045 21.680405374667984 30 17.954892969909768 26.639152114838826 35.63693046409569 19.769024451155715 31 19.72966047643407 25.95487811557969 34.14657695889157 20.168884449094676 32 21.102850453103486 26.26120225377323 31.68553940250314 20.95040789062014 33 22.213211626855514 26.1075991967521 31.085006689090516 20.594182487301868 34 20.02800041220766 29.43311234422682 31.2857722441272 19.25311499943832 35 18.422200910384756 30.427331224637395 31.47618618788685 19.674281677091003 36 19.515526024322106 26.16729503577573 34.08131074608658 20.235868193815584 37 19.57768211176584 26.749631194835892 32.83925665218679 20.833430041211482 38 20.115408860793575 26.133455015053936 33.52199879865606 20.229137325496435 39 21.215743361739143 25.5153292044485 33.37378043629024 19.89514699752211 40 19.107171206366566 26.51753228727903 32.33894424705721 22.03635225929719 41 20.308840090351463 25.911986237463175 32.165427103767705 21.613746568417653 42 17.431231414679978 27.893832389309708 32.614259971201164 22.060676224809146 43 18.187734593970813 27.768266880321445 32.125366832323394 21.918631693384345 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 129.0 1 185.0 2 241.0 3 896.5 4 1552.0 5 1552.0 6 2875.5 7 4199.0 8 4624.5 9 5050.0 10 7789.5 11 10529.0 12 10529.0 13 19340.5 14 28152.0 15 47399.5 16 66647.0 17 65260.0 18 63873.0 19 63873.0 20 66592.5 21 69312.0 22 55397.5 23 41483.0 24 44839.0 25 48195.0 26 48195.0 27 52634.0 28 57073.0 29 58369.5 30 59666.0 31 62728.5 32 65791.0 33 65791.0 34 71453.0 35 77115.0 36 83912.0 37 90709.0 38 94627.0 39 98545.0 40 98545.0 41 102704.0 42 106863.0 43 124299.0 44 141735.0 45 185701.5 46 229668.0 47 229668.0 48 231922.0 49 234176.0 50 208810.5 51 183445.0 52 168493.0 53 153541.0 54 153541.0 55 130516.5 56 107492.0 57 84955.5 58 62419.0 59 53138.0 60 43857.0 61 43857.0 62 38105.5 63 32354.0 64 27863.5 65 23373.0 66 19690.0 67 16007.0 68 16007.0 69 13741.5 70 11476.0 71 9685.0 72 7894.0 73 6378.5 74 4863.0 75 4863.0 76 3961.5 77 3060.0 78 2354.0 79 1648.0 80 1331.5 81 1015.0 82 1015.0 83 776.5 84 538.0 85 418.5 86 299.0 87 231.5 88 164.0 89 164.0 90 122.0 91 80.0 92 48.0 93 16.0 94 11.5 95 7.0 96 7.0 97 4.0 98 1.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2154254.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.113995750084854 #Duplication Level Percentage of deduplicated Percentage of total 1 73.25696789825244 28.653727310363486 2 13.799395196151764 10.79498970112043 3 5.144048619543757 6.036128875291932 4 2.4590839965076614 3.847384039540094 5 1.3916594569132608 2.7216681041635336 6 0.8186073053582358 1.921140159766227 7 0.5588102172399732 1.5300110323559812 8 0.3810051967948057 1.1922108518553818 9 0.27864161976989194 0.980890841832868 >10 1.6305126210009908 12.099891929729225 >50 0.16063062181576154 4.383176464786221 >100 0.10053212066310657 7.467072787618904 >500 0.009454198030270245 2.4983391998379645 >1k 0.00873615767354086 6.503555201077081 >5k 0.0013164073206705406 3.742008736879069 >10k+ 5.983669639411548E-4 5.627804763781661 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 32424 1.5051149957247383 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 32362 1.5022369692710331 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28344 1.315722287158339 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 16542 0.7678760257611219 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10557 0.4900536334155582 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9568 0.44414446950081093 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 8952 0.4155498840898056 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 8939 0.4149464269301577 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8743 0.40584814975392874 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7649 0.35506490878048735 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6958 0.3229888397561291 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6749 0.3132871054202522 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 6538 0.30349253152135264 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5443 0.25266287076639987 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5219 0.24226483970785245 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5184 0.24064014735495445 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4939 0.22926730088466818 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3951 0.18340455675143227 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3937 0.18275467981027305 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3815 0.17709146646588564 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3252 0.150957129474983 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3220 0.14947169646661906 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3152 0.14631515132384576 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3035 0.14088403688701517 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3032 0.14074477754248105 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2810 0.1304395860469564 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2489 0.11553883618180587 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2355 0.10931858545928197 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 2348 0.10899364698870236 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2299 0.10671907769464511 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2297 0.10662623813162238 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 2291 0.10634771944255414 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 2251 0.10449092818209922 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 2248 0.10435166883756511 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2240 0.10398031058547413 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2195 0.10189142041746237 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.6419781511372385E-5 0.0 3 0.0 0.0 0.0 4.6419781511372385E-5 0.0 4 0.0 0.0 0.0 4.6419781511372385E-5 0.0 5 0.0 0.0 0.0 4.6419781511372385E-5 0.0 6 0.0 0.0 0.0 4.6419781511372385E-5 0.0 7 0.0 0.0 0.0 4.6419781511372385E-5 0.0 8 0.0 0.0 0.0 4.6419781511372385E-5 0.0 9 0.0 0.0 0.0 1.3925934453411714E-4 0.0 10 0.0 0.0 0.0 3.713582520909791E-4 0.0 11 0.0 0.0 0.0 6.03457159647841E-4 0.0 12 0.0 0.0 0.0 0.0012997538823184267 0.0 13 0.0 0.0 0.0 0.0015318527898752887 0.0 14 0.0 0.0 0.0 0.0019032110419662676 0.0 15 0.0 0.0 0.0 0.003017285798239205 0.0 16 0.0 0.0 0.0 0.005245435310785079 0.0 17 0.0 0.0 0.0 0.007473584823330954 0.0 18 0.0 0.0 0.0 0.008448400235069774 0.0 19 0.0 0.0 0.0 0.00993383324343369 0.0 20 0.0 0.0 0.0 0.012997538823184267 0.0 21 0.0 0.0 0.0 0.018010875226412485 0.0 22 0.0 0.0 0.0 0.028780264537050876 0.0 23 0.0 0.0 0.0 0.04614126282230415 0.0 24 0.0 0.0 0.0 0.07111510527542249 0.0 25 0.0 0.0 0.0 0.07937782638444678 0.0 26 0.0 0.0 0.0 0.08921882006485772 0.0 27 0.0 0.0 0.0 0.16414034742421274 0.0 28 0.0 0.0 0.0 0.24579274310271676 0.0 29 0.0 0.0 0.0 0.3475913239571564 0.0 30 0.0 0.0 0.0 0.5566660198843776 0.0 31 0.0 0.0 0.0 0.8460933576077844 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7315 0.0 29.564592 1 ATTGGAC 810 0.0 23.52469 3 GTATTGG 865 0.0 22.456646 1 TATTGGA 965 0.0 20.321243 2 ACGCATA 55 5.1451015E-4 20.181818 7 CCGTTAT 65 6.905711E-5 19.923077 9 GCGATCA 80 1.6177397E-5 18.5 35 TTGGACC 1435 0.0 18.04878 4 ACCGTTA 85 2.7249058E-5 17.411764 8 CCCGTTG 75 2.0683244E-4 17.266666 31 GTATCAA 12865 0.0 16.910997 2 GGACCCT 1445 0.0 16.899654 6 TGGACCC 1560 0.0 16.128206 5 ACGTTTA 150 4.6766218E-9 16.033333 26 TCTATAC 185 1.8189894E-11 16.0 3 CGCCACA 175 1.3278623E-10 15.857143 1 CGATCAC 105 9.350606E-6 15.857142 36 GACCCTC 1600 0.0 15.378126 7 CGGGCGT 85 5.366855E-4 15.235294 6 TTACGCC 85 5.366855E-4 15.235294 29 >>END_MODULE