##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088170_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3463593 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.12613375763261 31.0 31.0 33.0 30.0 34.0 2 31.26438181391405 31.0 31.0 34.0 28.0 34.0 3 31.325671347643905 31.0 31.0 34.0 28.0 34.0 4 35.28716162666918 37.0 35.0 37.0 33.0 37.0 5 35.149778279376356 37.0 35.0 37.0 32.0 37.0 6 35.19544559652361 37.0 35.0 37.0 32.0 37.0 7 35.04695441987555 37.0 35.0 37.0 32.0 37.0 8 35.09801671270267 37.0 35.0 37.0 32.0 37.0 9 36.62235141369093 39.0 35.0 39.0 32.0 39.0 10 36.46147425520262 38.0 35.0 39.0 32.0 39.0 11 36.47666368421463 38.0 35.0 39.0 32.0 39.0 12 36.32791006333596 38.0 35.0 39.0 32.0 39.0 13 36.379361547387354 38.0 35.0 39.0 32.0 39.0 14 37.342367882138575 39.0 36.0 41.0 32.0 41.0 15 37.40049740255278 39.0 36.0 41.0 32.0 41.0 16 37.38117151755417 39.0 36.0 41.0 32.0 41.0 17 37.45011812877552 39.0 36.0 41.0 32.0 41.0 18 37.44508838076529 39.0 36.0 41.0 32.0 41.0 19 37.52595325143572 39.0 36.0 41.0 32.0 41.0 20 37.48245593520948 39.0 36.0 41.0 32.0 41.0 21 37.361648727203224 39.0 36.0 41.0 31.0 41.0 22 37.31955197969276 39.0 36.0 41.0 31.0 41.0 23 37.2305978213953 39.0 36.0 41.0 31.0 41.0 24 37.15576541470086 39.0 36.0 41.0 31.0 41.0 25 37.06792570605149 39.0 36.0 40.0 31.0 41.0 26 36.81794050282467 39.0 35.0 40.0 31.0 41.0 27 36.66559956669274 39.0 35.0 40.0 30.0 41.0 28 36.53222852685059 38.0 35.0 40.0 30.0 41.0 29 36.397228254012525 38.0 35.0 40.0 30.0 41.0 30 36.24551065901796 38.0 35.0 40.0 30.0 41.0 31 36.02594646657387 38.0 35.0 40.0 30.0 41.0 32 35.77060959529598 38.0 34.0 40.0 29.0 41.0 33 35.94422323870039 38.0 35.0 40.0 29.0 41.0 34 35.94306172809565 38.0 35.0 40.0 29.0 41.0 35 35.86275321609669 38.0 35.0 40.0 29.0 41.0 36 35.79034083970028 38.0 35.0 40.0 28.0 41.0 37 35.666490548976164 38.0 34.0 40.0 27.0 41.0 38 35.5565258389193 38.0 34.0 40.0 27.0 41.0 39 35.52847722004289 38.0 34.0 40.0 27.0 41.0 40 35.39439564637069 38.0 34.0 40.0 26.0 41.0 41 35.28364418105707 38.0 34.0 40.0 25.0 41.0 42 35.1018705142319 38.0 34.0 40.0 25.0 41.0 43 34.801497173599785 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 4.0 15 9.0 16 40.0 17 70.0 18 245.0 19 501.0 20 1087.0 21 2230.0 22 4057.0 23 7058.0 24 11962.0 25 18907.0 26 28587.0 27 42018.0 28 59283.0 29 80804.0 30 104214.0 31 129281.0 32 158957.0 33 194180.0 34 237822.0 35 289390.0 36 362853.0 37 473415.0 38 610179.0 39 646438.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.254587360581915 22.12785971099953 13.353791857184143 23.26376107123441 2 17.439780020343036 22.796327397589728 36.608400582862934 23.155491999204294 3 19.653723748719898 26.181078435023974 31.65657743274109 22.508620383515037 4 12.877754401282138 15.713855525172848 35.87690586047494 35.53148421307007 5 11.640946265915193 40.035217763749955 34.910885892193456 13.412950078141398 6 31.89736784893606 36.29003176758932 15.7716856455132 16.04091473796142 7 25.501119790922317 34.35143794319945 21.67699842331359 18.47044384256464 8 27.54705879126098 33.7568530713626 20.215741283690086 18.48034685368633 9 25.578178498455216 13.628766428388092 22.99978663774872 37.793268435407974 10 16.26729814963825 27.27627062417553 33.95038042864736 22.506050797538858 11 32.23681304356488 21.798230912234782 24.887854895191207 21.07710114900914 12 20.465770660698297 26.724098356821948 31.849065406934358 20.961065575545394 13 30.86679064197208 20.678180144145113 28.243936282351882 20.211092931530928 14 21.09035328342562 22.052388949856404 28.05826204175837 28.798995724959603 15 23.15705107384153 28.789958866414157 26.325581556493503 21.727408503250814 16 22.19787371091234 28.28242232848952 26.656538455875157 22.863165504722986 17 20.11220717907676 26.958767961478152 27.627870826624264 25.301154032820833 18 21.076292739937976 26.41571916792764 31.321549616251097 21.186438475883282 19 20.49184185324315 24.969966159418846 32.42205420787027 22.11613777946774 20 24.395360540340626 24.021096012146923 31.255808635714416 20.327734811798038 21 23.83879976660075 24.938726923169092 30.157902501823976 21.064570808406184 22 22.492827534874912 24.460235368301067 31.066409939043073 21.98052715778095 23 21.464531196361698 26.074599411651427 31.949856695056262 20.511012696930614 24 20.328196759838697 25.44063346934816 30.585493156961576 23.645676613851567 25 21.517828451553058 26.181626998322262 31.456582802887063 20.84396174723762 26 22.703446969664164 25.39957783723434 30.348513812102055 21.54846138099944 27 21.373325330083528 26.70637110076155 30.03121325167247 21.889090317482452 28 21.277326752883493 26.023178820375257 30.183973694368827 22.515520732372423 29 20.41498524797804 26.089121903179734 31.003325159740193 22.49256768910204 30 19.919112898080115 26.339613228228604 32.59245529136939 21.148818582321883 31 21.205205115035167 25.83048874391419 31.5734556571745 21.390850483876136 32 22.102712414536004 25.9097128328877 29.831160878313355 22.156413874262938 33 22.85412864617754 25.849919433374534 29.498731519552095 21.797220400895835 34 21.391514534184587 28.215093401563056 29.52104938426657 20.872342679985785 35 20.218051023893395 29.000520557698323 29.819063613998527 20.962364804409756 36 20.99781931653055 25.923340300087222 31.55232153431422 21.526518849068005 37 21.17590028620568 26.093741383586348 30.771860319616074 21.95849801059189 38 21.27596978051405 25.6795183498754 31.421994443342506 21.62251742626804 39 22.117263777816852 25.31209642703401 31.294439040614762 21.27620075453438 40 20.5598637022306 26.047864168798124 30.619330850940052 22.772941278031222 41 21.355395971755343 25.56287646960829 30.589448587059735 22.492278971576628 42 19.30931261265397 27.126252997970607 30.893439269567757 22.670995119807667 43 19.835673533235575 26.72929527227939 30.601286005601697 22.833745188883338 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 196.0 1 306.5 2 417.0 3 1297.5 4 2178.0 5 2178.0 6 3810.0 7 5442.0 8 5871.0 9 6300.0 10 9521.5 11 12743.0 12 12743.0 13 22767.5 14 32792.0 15 52709.5 16 72627.0 17 72310.0 18 71993.0 19 71993.0 20 76744.0 21 81495.0 22 68320.0 23 55145.0 24 61177.5 25 67210.0 26 67210.0 27 74839.5 28 82469.0 29 88793.5 30 95118.0 31 102989.5 32 110861.0 33 110861.0 34 120991.5 35 131122.0 36 142385.5 37 153649.0 38 161477.5 39 169306.0 40 169306.0 41 177370.0 42 185434.0 43 207296.0 44 229158.0 45 279191.5 46 329225.0 47 329225.0 48 333242.0 49 337259.0 50 309806.0 51 282353.0 52 265502.5 53 248652.0 54 248652.0 55 219734.5 56 190817.0 57 162549.0 58 134281.0 59 119665.0 60 105049.0 61 105049.0 62 93249.5 63 81450.0 64 72003.0 65 62556.0 66 53394.0 67 44232.0 68 44232.0 69 37879.0 70 31526.0 71 26540.0 72 21554.0 73 17239.5 74 12925.0 75 12925.0 76 10033.5 77 7142.0 78 5516.0 79 3890.0 80 3075.0 81 2260.0 82 2260.0 83 1720.0 84 1180.0 85 965.0 86 750.0 87 613.0 88 476.0 89 476.0 90 383.0 91 290.0 92 169.0 93 48.0 94 33.0 95 18.0 96 18.0 97 11.5 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3463593.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.68312656644051 #Duplication Level Percentage of deduplicated Percentage of total 1 72.69534146763317 31.02864460653597 2 14.229143180630096 12.146886386216764 3 5.3453974956824215 6.844748335684406 4 2.6276695848434963 4.486286138586445 5 1.3621049446183136 2.9069448873958956 6 0.8585922068995238 2.1988439901631107 7 0.5483394840292605 1.638339051873832 8 0.38678175921311503 1.3207243825667123 9 0.27989276371853783 1.0752028432946257 >10 1.41256563001068 11.40218154792252 >50 0.1443071613397079 4.29367858394302 >100 0.09727664325014382 7.808941396985353 >500 0.006531984328176152 1.905171010966722 >1k 0.004898988245429147 4.220476549168478 >5k 5.443320272699052E-4 1.5871584716151534 >10k+ 6.123735306786433E-4 5.135771817081071 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 35223 1.0169497397644585 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 34544 0.9973458197888724 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 31545 0.9107594339173223 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 21295 0.6148239703683429 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12393 0.35780762924512205 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11136 0.3215158363006277 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10513 0.303528734467358 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 10163 0.29342362107788067 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 10026 0.2894681909797138 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8398 0.24246497784237353 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 8019 0.2315225836291966 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7702 0.22237023807358428 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7195 0.20773225953511282 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6270 0.18102588843435127 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6193 0.17880276348866625 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5808 0.16768713876024116 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5065 0.14623542662200784 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4204 0.12137684768389358 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4143 0.11961567077887038 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4007 0.1156891124332449 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3953 0.11413003779601125 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3881 0.11205127161303305 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3739 0.10795148275215939 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 2.8871752541363838E-5 0.0 5 0.0 0.0 0.0 2.8871752541363838E-5 0.0 6 2.8871752541363838E-5 0.0 0.0 2.8871752541363838E-5 0.0 7 2.8871752541363838E-5 0.0 0.0 2.8871752541363838E-5 0.0 8 2.8871752541363838E-5 0.0 0.0 2.8871752541363838E-5 0.0 9 2.8871752541363838E-5 0.0 0.0 8.661525762409152E-5 0.0 10 2.8871752541363838E-5 0.0 0.0 8.661525762409152E-5 0.0 11 2.8871752541363838E-5 0.0 0.0 3.1758927795500223E-4 0.0 12 2.8871752541363838E-5 0.0 0.0 5.196915457445491E-4 0.0 13 2.8871752541363838E-5 0.0 0.0 5.196915457445491E-4 0.0 14 2.8871752541363838E-5 0.0 0.0 7.506655660754598E-4 0.0 15 2.8871752541363838E-5 0.0 0.0 0.0011259983491131898 0.0 16 2.8871752541363838E-5 0.0 0.0 0.001963279172812741 0.0 17 2.8871752541363838E-5 0.0 0.0 0.0031758927795500222 0.0 18 2.8871752541363838E-5 0.0 0.0 0.0036378408202118436 0.0 19 2.8871752541363838E-5 0.0 0.0 0.004446249891370031 0.0 20 2.8871752541363838E-5 0.0 0.0 0.005658863498107312 0.0 21 2.8871752541363838E-5 0.0 0.0 0.008401679989536876 0.0 22 2.8871752541363838E-5 0.0 0.0 0.014349261013057828 0.0 23 2.8871752541363838E-5 0.0 0.0 0.025002937700821085 0.0 24 2.8871752541363838E-5 0.0 0.0 0.03891912242575846 0.0 25 2.8871752541363838E-5 0.0 0.0 0.045328651489941224 0.0 26 2.8871752541363838E-5 0.0 0.0 0.05329725519135765 0.0 27 2.8871752541363838E-5 0.0 0.0 0.11300403944689806 0.0 28 2.8871752541363838E-5 0.0 0.0 0.17487620514304078 0.0 29 2.8871752541363838E-5 0.0 0.0 0.2532341415403022 0.0 30 5.7743505082727676E-5 0.0 0.0 0.39996038795551325 0.0 31 5.7743505082727676E-5 0.0 0.0 0.6233411373680453 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8560 0.0 28.441587 1 ATTGGAC 1180 0.0 22.105932 3 GTATTGG 1190 0.0 21.29832 1 TATTGGA 1545 0.0 18.200647 2 TTGGACC 1940 0.0 17.546392 4 TGGACCC 1930 0.0 16.966322 5 GGACCCT 1980 0.0 16.724747 6 GTATCAA 14715 0.0 16.59531 2 CAATGCG 155 7.223207E-9 15.5161295 19 TAGTACT 495 0.0 15.323231 4 TATACTG 475 0.0 15.189473 5 GACCCTC 2110 0.0 15.168245 7 ATTCGCG 75 0.004106624 14.8 17 CGATCGC 165 1.6483682E-8 14.575757 19 CGATCCG 90 8.279945E-4 14.388889 28 CTAGTAC 425 0.0 14.364705 3 CCCGTAT 170 2.4414476E-8 14.147059 1 GCGTTAT 275 0.0 14.127272 1 ACGTTTA 250 0.0 14.059999 26 TATACCG 290 0.0 14.034483 5 >>END_MODULE