##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088165_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 753919 Sequences flagged as poor quality 0 Sequence length 43 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.425519187074475 31.0 30.0 31.0 27.0 34.0 2 30.577416141521834 31.0 30.0 33.0 27.0 34.0 3 30.582979073348728 31.0 30.0 34.0 27.0 34.0 4 34.559785600309844 35.0 35.0 37.0 32.0 37.0 5 34.35935027502955 35.0 35.0 37.0 30.0 37.0 6 34.53158097885847 35.0 35.0 37.0 30.0 37.0 7 34.333579602052744 35.0 35.0 37.0 30.0 37.0 8 34.456238667549165 35.0 35.0 37.0 30.0 37.0 9 35.790371379418744 37.0 35.0 39.0 30.0 39.0 10 35.56252860055258 37.0 35.0 39.0 30.0 39.0 11 35.694687360313246 37.0 35.0 39.0 30.0 39.0 12 35.46162120864443 37.0 35.0 39.0 30.0 39.0 13 35.564370973539596 37.0 35.0 39.0 30.0 39.0 14 36.261850410985794 38.0 34.0 40.0 30.0 41.0 15 36.374666243986425 38.0 35.0 40.0 30.0 41.0 16 36.26781789555642 38.0 34.0 40.0 30.0 41.0 17 36.433131410668786 38.0 35.0 40.0 30.0 41.0 18 36.45190663718516 38.0 35.0 40.0 30.0 41.0 19 36.580982837678846 38.0 35.0 40.0 30.0 41.0 20 36.569038583720534 38.0 35.0 40.0 30.0 41.0 21 36.47530039699225 38.0 35.0 40.0 30.0 41.0 22 36.41913388573573 38.0 35.0 40.0 30.0 41.0 23 36.2697106718361 38.0 34.0 40.0 30.0 41.0 24 36.184570225713905 38.0 34.0 40.0 30.0 41.0 25 36.06653101991063 38.0 34.0 40.0 29.0 41.0 26 35.73682318657575 38.0 34.0 40.0 28.0 41.0 27 35.508303942465965 38.0 34.0 40.0 27.0 41.0 28 35.304585771150485 38.0 34.0 40.0 27.0 41.0 29 35.11634804269424 37.0 33.0 40.0 27.0 41.0 30 34.869277734080185 37.0 33.0 40.0 26.0 41.0 31 34.55218000872773 37.0 33.0 39.0 25.0 40.0 32 34.26412386476531 36.0 33.0 39.0 25.0 40.0 33 34.3932690381858 36.0 33.0 39.0 25.0 40.0 34 34.29516566103255 36.0 33.0 39.0 25.0 41.0 35 34.15530315590932 36.0 33.0 40.0 24.0 41.0 36 34.005854740363354 36.0 33.0 39.0 24.0 41.0 37 33.81644181934664 36.0 33.0 40.0 23.0 41.0 38 33.65760512734126 36.0 33.0 39.0 22.0 41.0 39 33.506672467466665 36.0 32.0 40.0 21.0 41.0 40 33.25336408818454 36.0 32.0 40.0 19.0 41.0 41 33.03322638108338 36.0 31.0 40.0 18.0 41.0 42 32.72585251200726 36.0 31.0 40.0 15.0 41.0 43 32.34184574204921 36.0 30.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 3.0 15 9.0 16 25.0 17 69.0 18 142.0 19 338.0 20 621.0 21 1219.0 22 2027.0 23 3438.0 24 5221.0 25 7965.0 26 11209.0 27 15640.0 28 20586.0 29 26410.0 30 32381.0 31 38581.0 32 45956.0 33 54149.0 34 62522.0 35 73335.0 36 90503.0 37 107687.0 38 107266.0 39 46615.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.318440044620175 26.054125177903725 15.986465389517972 19.640969387958123 2 20.021646887795637 25.89164087919259 32.64594737630966 21.440764856702113 3 22.934559282893787 25.77146881826827 32.46064895565704 18.8333229431809 4 16.10027071873769 18.503446656736333 32.87674140060139 32.519541223924584 5 10.52274846502078 42.953288085324814 33.65693131490253 12.867032134751877 6 31.99813242536665 36.585760539262175 14.20643331710701 17.209673718264163 7 22.55706514890857 37.43545394133852 21.439836374995192 18.56764453475771 8 28.03165857340112 34.96688636312389 19.82533932690382 17.17611573657117 9 24.424109221282393 13.88080151846551 25.419308970857614 36.27578028939448 10 16.95195372447173 30.03598529815537 33.264183552875046 19.747877424497855 11 31.111299755013473 22.23143335026707 24.57279893463356 22.0844679600859 12 18.978961930923614 29.983459761592425 31.67860207794206 19.3589762295419 13 31.05850893796283 21.460395612791295 30.443323487005898 17.037771962239976 14 20.37035808886631 23.877366136149906 30.388012505322187 25.364263269661596 15 23.16601650840475 30.315458291938523 27.514494262646256 19.004030937010473 16 20.5026004119806 28.246005207455973 29.692181786106996 21.559212594456433 17 18.418954821406544 28.52256011587452 30.176981877363485 22.881503185355456 18 18.702274382261226 26.355351171677594 35.08029377161207 19.86208067444911 19 18.427709077500367 25.424349300123755 37.370592862097915 18.777348760277963 20 22.232361831973993 24.369328800574067 36.074962960211906 17.323346407240034 21 22.126249636897334 24.489235581010693 34.516970655998854 18.867544126093122 22 19.92733967442126 25.062771995400034 35.04156282040909 19.968325509769617 23 19.392136290503355 27.453612390721023 35.67744014940597 17.476811169369654 24 17.974079443547648 26.353892128995287 34.345997381681585 21.326031045775476 25 18.97524800409593 27.38954715294349 35.40950685683741 18.225697986123176 26 20.167020595050662 26.116068171779727 34.328886790225475 19.388024442944136 27 19.674925290382653 27.188464543273216 33.833077558729784 19.303532607614347 28 19.25923076616984 27.66795902477587 33.8881232599258 19.184686949128487 29 18.111096815440387 26.840151262934082 34.73635761931985 20.312394302305687 30 17.60109507785319 27.331716006626706 36.806473905021626 18.260715010498476 31 19.036129876021164 26.229740860755594 35.34278881418296 19.391340449040282 32 19.536714156295304 27.46316248827792 33.445635406456134 19.554487948970646 33 20.713365759451612 27.575508774815333 32.41090886421485 19.3002166015182 34 19.261220369827527 29.625463743452546 32.94531640666968 18.167999480050245 35 17.67616945586993 30.352597560215354 33.021053985905645 18.950178998009072 36 18.80878449806942 26.89320736047241 35.15324590572727 19.144762235730894 37 18.475724845772557 27.389812433431178 34.4201432779914 19.714319442804864 38 19.443733345359384 27.07651617746734 34.194124302478116 19.28562617469516 39 20.539341759525893 26.615193409371564 33.73293417462619 19.11253065647636 40 18.760370809065698 27.45228598828256 33.094801961483924 20.692541241167817 41 19.158158900359325 27.085668354292704 32.918920998144365 20.83725174720361 42 16.94996412081404 28.56951476219594 32.98219039445882 21.4983307225312 43 17.439937181580515 28.138566609940856 32.83323540061996 21.58826080785867 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 118.0 1 146.0 2 174.0 3 346.5 4 519.0 5 519.0 6 1038.5 7 1558.0 8 1771.0 9 1984.0 10 3058.0 11 4132.0 12 4132.0 13 8155.5 14 12179.0 15 20727.0 16 29275.0 17 26975.5 18 24676.0 19 24676.0 20 28355.5 21 32035.0 22 25327.5 23 18620.0 24 19180.5 25 19741.0 26 19741.0 27 20805.0 28 21869.0 29 22208.0 30 22547.0 31 24179.0 32 25811.0 33 25811.0 34 27894.5 35 29978.0 36 32233.0 37 34488.0 38 35084.5 39 35681.0 40 35681.0 41 37317.0 42 38953.0 43 43948.5 44 48944.0 45 60610.0 46 72276.0 47 72276.0 48 74025.0 49 75774.0 50 67876.5 51 59979.0 52 53693.0 53 47407.0 54 47407.0 55 39857.5 56 32308.0 57 25918.5 58 19529.0 59 16598.0 60 13667.0 61 13667.0 62 11863.5 63 10060.0 64 8551.0 65 7042.0 66 5806.5 67 4571.0 68 4571.0 69 3870.0 70 3169.0 71 2636.5 72 2104.0 73 1694.0 74 1284.0 75 1284.0 76 996.5 77 709.0 78 536.0 79 363.0 80 279.5 81 196.0 82 196.0 83 142.0 84 88.0 85 71.5 86 55.0 87 45.5 88 36.0 89 36.0 90 25.0 91 14.0 92 10.0 93 6.0 94 3.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 753919.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.859350682221695 #Duplication Level Percentage of deduplicated Percentage of total 1 79.4641667531067 38.03103423307476 2 11.333880923229229 10.848643633907407 3 3.7595285394812086 5.397857843125559 4 1.7085682684295667 3.2708387169314768 5 0.9123211766442704 2.183154956391763 6 0.5435219389376941 1.560756424746011 7 0.3651434211018933 1.2232868927875165 8 0.2594620670185278 0.9934148843339066 9 0.21674743833989527 0.9336052494884044 >10 1.2498937961203165 11.21498700342673 >50 0.09823933389605966 3.268059098240819 >100 0.07048806049673989 6.626429170392909 >500 0.011655506066374643 3.9415645492185627 >1k 0.0055502409839879255 5.454863955283741 >5k 2.7751204919939623E-4 1.1896281183189223 >10k+ 5.550240983987925E-4 3.8618752703315073 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 14922 1.97925771866739 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 14155 1.8775226516376426 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 8957 1.188058664127048 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4669 0.6192972985161537 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 3650 0.4841368900372587 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3185 0.4224591766489504 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 2892 0.38359558520212383 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2795 0.37072948154907887 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 2382 0.31594906084075347 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2180 0.28915573158389696 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2012 0.2668721706177985 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 1989 0.2638214450093445 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1955 0.25931167671858646 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1858 0.2464455730655415 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 1588 0.21063270722716898 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1575 0.20890838405717327 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1401 0.18582898162799982 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1399 0.18556370114030818 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1140 0.15120987798423968 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 1137 0.15081195725270222 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1105 0.14656746944963583 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1101 0.14603690847425255 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1058 0.1403333779888821 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 974 0.12919159750583287 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 960 0.12733463409199133 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAC 927 0.12295750604507912 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 925 0.12269222555738746 No Hit GGGGAGAAGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 910 0.1207026218997001 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 899 0.11924357921739602 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 875 0.11606021336509624 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 871 0.11552965238971295 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 862 0.11433589019510053 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 857 0.11367268897587142 No Hit ACGCACATGCGAGGGTCCAAAAAAAAAAAAAAAAAAAAAAAAA 849 0.11261156702510483 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 841 0.11155044507433823 No Hit TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 795 0.10544899385743031 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 794 0.10531635361358449 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 777 0.10306146946820548 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 1.326402438458243E-4 0.0 7 0.0 0.0 0.0 1.326402438458243E-4 0.0 8 0.0 0.0 0.0 1.326402438458243E-4 0.0 9 0.0 0.0 0.0 1.326402438458243E-4 0.0 10 0.0 0.0 0.0 1.326402438458243E-4 0.0 11 0.0 0.0 0.0 1.326402438458243E-4 0.0 12 0.0 0.0 0.0 1.326402438458243E-4 0.0 13 0.0 0.0 0.0 1.326402438458243E-4 0.0 14 0.0 0.0 0.0 1.326402438458243E-4 0.0 15 0.0 0.0 0.0 2.652804876916486E-4 0.0 16 0.0 0.0 0.0 7.958414630749457E-4 0.0 17 0.0 0.0 0.0 0.0011937621946124185 0.0 18 0.0 0.0 0.0 0.0011937621946124185 0.0 19 0.0 0.0 0.0 0.00185696341384154 0.0 20 0.0 0.0 0.0 0.0025201646330706615 0.0 21 0.0 0.0 0.0 0.0029180853646081344 0.0 22 0.0 0.0 0.0 0.0054382499976787955 0.0 23 0.0 0.0 0.0 0.008754256093824403 0.0 24 0.0 0.0 0.0 0.014723067066886496 0.0 25 0.0 0.0 0.0 0.01896755486995287 0.0 26 0.0 0.0 0.0 0.02811973169531475 0.0 27 0.0 0.0 0.0 0.0933787316674603 0.0 28 0.0 0.0 0.0 0.16089261578498487 0.0 29 0.0 0.0 0.0 0.23517115233864647 0.0 30 0.0 0.0 0.0 0.38518726812827375 0.0 31 0.0 0.0 0.0 0.6109409631538667 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2950 0.0 32.61017 1 GTACTAG 50 9.085672E-6 25.900002 1 CGTTGTG 40 0.0019305743 23.125 35 TCACGTT 75 3.737241E-7 22.2 24 CGTGTCT 85 5.174843E-8 21.764706 35 GTATCAA 4610 0.0 20.90781 2 ACGTTTA 80 6.953578E-7 20.8125 26 TCGTGTC 90 9.467476E-8 20.555557 34 CGTTTAT 90 9.467476E-8 20.555557 27 TAAGCCG 65 6.898103E-5 19.923077 36 CGACGAG 50 0.007032692 18.5 24 ATCACGT 90 2.1502165E-6 18.5 23 CGTCTGT 275 0.0 18.163637 34 CACGTTT 95 3.6030597E-6 17.526314 25 TATCCTG 95 3.6030597E-6 17.526314 5 GGCAGTT 130 1.3907993E-8 17.076923 12 TATACAG 90 4.4426917E-5 16.444445 5 GCGTCTG 315 0.0 16.444445 33 TCGAACC 90 4.4426917E-5 16.444445 31 AAGCCGT 80 3.380635E-4 16.1875 37 >>END_MODULE