##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088162_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3127195 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.088537491266134 31.0 31.0 33.0 28.0 34.0 2 31.23181861060791 31.0 31.0 34.0 28.0 34.0 3 31.284997257926033 31.0 31.0 34.0 28.0 34.0 4 35.254762814599026 37.0 35.0 37.0 33.0 37.0 5 35.12873901371677 37.0 35.0 37.0 32.0 37.0 6 35.17488132335847 37.0 35.0 37.0 32.0 37.0 7 35.00055449052586 37.0 35.0 37.0 32.0 37.0 8 35.064040777757704 37.0 35.0 37.0 32.0 37.0 9 36.54753988798268 39.0 35.0 39.0 32.0 39.0 10 36.41622156597206 38.0 35.0 39.0 32.0 39.0 11 36.43568597417174 38.0 35.0 39.0 32.0 39.0 12 36.26903758799819 38.0 35.0 39.0 32.0 39.0 13 36.31248163290105 38.0 35.0 39.0 32.0 39.0 14 37.22290455184279 39.0 36.0 41.0 32.0 41.0 15 37.28495312892225 39.0 36.0 41.0 32.0 41.0 16 37.273884423580874 39.0 36.0 41.0 32.0 41.0 17 37.38190455024391 39.0 36.0 41.0 32.0 41.0 18 37.396474156552436 39.0 36.0 41.0 32.0 41.0 19 37.49765172942525 39.0 36.0 41.0 32.0 41.0 20 37.45534224760528 39.0 36.0 41.0 32.0 41.0 21 37.33520327322089 39.0 36.0 41.0 31.0 41.0 22 37.29463688705054 39.0 36.0 41.0 31.0 41.0 23 37.17140536487172 39.0 36.0 41.0 31.0 41.0 24 37.10270354103278 39.0 36.0 41.0 31.0 41.0 25 37.01410273423947 39.0 36.0 40.0 31.0 41.0 26 36.740610994837226 39.0 35.0 40.0 30.0 41.0 27 36.58987878913851 38.0 35.0 40.0 30.0 41.0 28 36.443107321417436 38.0 35.0 40.0 30.0 41.0 29 36.30140205519643 38.0 35.0 40.0 30.0 41.0 30 36.12649962666223 38.0 35.0 40.0 30.0 41.0 31 35.84904331197767 38.0 34.0 40.0 29.0 41.0 32 35.55856702252338 38.0 34.0 40.0 28.0 41.0 33 35.69639213416496 38.0 34.0 40.0 29.0 41.0 34 35.672942045507234 38.0 34.0 40.0 28.0 41.0 35 35.58860032713022 38.0 34.0 40.0 27.0 41.0 36 35.494810205311786 38.0 34.0 40.0 27.0 41.0 37 35.351216345638825 38.0 34.0 40.0 26.0 41.0 38 35.22400521873436 38.0 34.0 40.0 26.0 41.0 39 35.15708550314259 38.0 34.0 40.0 25.0 41.0 40 34.98547260404292 38.0 34.0 40.0 24.0 41.0 41 34.83676009970597 38.0 33.0 40.0 24.0 41.0 42 34.60115183095394 38.0 33.0 40.0 23.0 41.0 43 34.29031160512856 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 7.0 15 9.0 16 32.0 17 87.0 18 233.0 19 503.0 20 1033.0 21 2198.0 22 4055.0 23 7045.0 24 11641.0 25 18640.0 26 28632.0 27 41544.0 28 58263.0 29 77871.0 30 99845.0 31 122797.0 32 149286.0 33 181172.0 34 219048.0 35 263777.0 36 329864.0 37 434707.0 38 530526.0 39 544375.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.979408063776 22.58931726355408 14.105388375205255 22.325886297464663 2 17.186648098375702 23.026993839527115 37.104561755822715 22.681796306274475 3 19.581062261867263 26.553540792947032 32.42723910725107 21.438157837934636 4 12.565797783636773 15.568968356626305 35.66790686221998 36.197326997516946 5 10.903733217787826 40.86486451916174 34.8264818791281 13.404920383922333 6 31.31934529186699 36.216513520902915 15.577538337072042 16.88660285015805 7 24.363591013671996 35.59704463584778 21.444713233424842 18.59465111705538 8 27.97881168267409 33.448122039079756 20.233531967146277 18.339534311099882 9 25.27654975145458 13.633559787605186 24.045350545776646 37.04453991516359 10 16.254151084278405 27.72222390992567 33.74755971405685 22.276065291739084 11 31.16588508231818 21.82879545407306 25.68010629333956 21.3252131702692 12 20.428786820137535 27.37053493626077 32.07574199882003 20.124936244781665 13 31.364881307369703 20.936398273852447 29.022878330260827 18.675842088517026 14 20.94714272694859 22.399306726954986 28.851382788729197 27.802167757367226 15 22.694875119715913 28.905264941904807 27.536370453393538 20.863489484985745 16 21.546529717526408 28.4888854068902 27.400849643210606 22.563735232372782 17 19.08221265383195 27.06140806697376 28.14535070566434 25.711028573529955 18 20.270593934820184 26.566395763615635 32.9554760736059 20.20753422795828 19 19.49104548964807 24.663380441577836 34.48090061540774 21.364673453366358 20 24.426011169754364 23.49386590858581 32.89913164992909 19.180991271730736 21 23.614453208066656 24.64403403049698 31.63346065723436 20.10805210420201 22 21.73430182639714 24.177353826672146 32.6111739114446 21.477170435486116 23 20.672135891749637 26.306866057281365 33.756033761885654 19.26496428908335 24 19.03104859146935 25.463458466772938 32.08140202321889 23.424090918538816 25 20.583014490621785 26.479768610527966 33.30809239590112 19.62912450294913 26 22.190653285132523 25.20690267156349 31.74582972919821 20.856614314105773 27 20.467223821987435 26.88070299421686 31.39510008170261 21.25697310209309 28 20.21424951114337 26.331776560144153 31.443641985869125 22.010331942843347 29 19.295374928650116 26.251417004695902 32.46868199776477 21.984526068889213 30 18.502555804802707 26.56418931342625 34.71900537062767 20.21424951114337 31 20.327481976659595 25.86058752332362 33.280367869608384 20.531562630408402 32 21.525296631645933 26.00256779637982 31.130901654677757 21.34123391729649 33 22.55929035445503 25.981814373583994 30.49035957143702 20.96853570052395 34 20.389326537040382 29.0509546094823 30.663166192066694 19.896552661410624 35 18.899173220729757 30.066785090152674 30.927588461864385 20.106453227253176 36 20.098938505593672 25.999785750488858 33.226581649049706 20.674694094867764 37 20.12250595181944 26.409705822630187 32.21903335097427 21.248754874576097 38 20.57230201506462 25.920097723359113 32.83926969696485 20.668330564611416 39 21.52229074298213 25.368868906480092 32.71932194826354 20.38951840227424 40 19.55013998167687 26.269484314217696 31.793796037663146 22.38657966644229 41 20.724195325203574 25.670640941802482 31.592401497188376 22.012762235805567 42 17.918454077855714 27.68557765025846 32.11871981120461 22.277248460681218 43 18.776955066761104 27.342586567195205 31.614306111387364 22.26615225465633 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 218.0 1 325.5 2 433.0 3 1409.0 4 2385.0 5 2385.0 6 3991.5 7 5598.0 8 6171.0 9 6744.0 10 10340.0 11 13936.0 12 13936.0 13 25375.0 14 36814.0 15 61427.5 16 86041.0 17 84582.0 18 83123.0 19 83123.0 20 86691.5 21 90260.0 22 72630.0 23 55000.0 24 60224.5 25 65449.0 26 65449.0 27 70841.5 28 76234.0 29 78733.5 30 81233.0 31 87080.5 32 92928.0 33 92928.0 34 102258.0 35 111588.0 36 121832.5 37 132077.0 38 138207.5 39 144338.0 40 144338.0 41 153608.5 42 162879.0 43 187046.5 44 211214.0 45 271242.0 46 331270.0 47 331270.0 48 334555.5 49 337841.0 50 303639.5 51 269438.0 52 248718.0 53 227998.0 54 227998.0 55 196134.0 56 164270.0 57 131675.0 58 99080.0 59 85287.5 60 71495.0 61 71495.0 62 62246.0 63 52997.0 64 46324.0 65 39651.0 66 33351.5 67 27052.0 68 27052.0 69 22619.0 70 18186.0 71 15065.5 72 11945.0 73 9843.5 74 7742.0 75 7742.0 76 6040.5 77 4339.0 78 3449.0 79 2559.0 80 1965.0 81 1371.0 82 1371.0 83 1027.5 84 684.0 85 531.0 86 378.0 87 304.0 88 230.0 89 230.0 90 179.0 91 128.0 92 82.0 93 36.0 94 24.5 95 13.0 96 13.0 97 6.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3127195.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.20834189146778 #Duplication Level Percentage of deduplicated Percentage of total 1 71.47439428014705 26.594436988612806 2 13.998972043190038 10.417570758242286 3 5.598152671233492 6.248939356556682 4 2.8893837884446194 4.3003671942444734 5 1.5843627120190817 2.9475754734449557 6 0.966807927836872 2.158399195340151 7 0.6301562338601527 1.6412948016155802 8 0.437121762525321 1.3011660790594508 9 0.3148706774003404 1.0544234234678933 >10 1.7802134700665415 12.601596262199658 >50 0.18775688775721983 4.860007444681645 >100 0.11846494235711799 8.076792572892593 >500 0.009888146908072278 2.5005433190041675 >1k 0.00771969363875506 5.9898273951279 >5k 8.673813077252876E-4 2.2862774263761785 >10k+ 8.673813077252876E-4 7.020782309133555 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 41994 1.3428647717842987 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 41433 1.3249253724184133 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 38028 1.2160418522030128 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 23334 0.7461638944805169 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13999 0.44765356813374285 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 13081 0.4182981873532031 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 12118 0.38750381731871536 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 11898 0.3804687587438583 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 11532 0.36876497947841436 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 10121 0.32364467198239955 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 9470 0.3028272941086181 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 9295 0.29723122478770914 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 8521 0.2724806096198031 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 7242 0.23158133726870248 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6966 0.22275553651115457 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6925 0.221444457413113 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 6734 0.2153367474685781 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5357 0.17130367629776846 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 5267 0.16842569778987238 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5063 0.16190227983864133 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4546 0.14536989218772733 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4363 0.13951800255500535 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4333 0.13855867638570668 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4182 0.13373006800023662 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3993 0.12768631313365492 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3479 0.11124985809967079 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 3277 0.10479039522639298 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3218 0.10290372042677223 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3166 0.10124088839998785 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 3.197753897662282E-5 0.0 8 0.0 0.0 0.0 6.395507795324564E-5 0.0 9 2.2384277283635974E-4 0.0 0.0 9.593261692986845E-5 0.0 10 2.2384277283635974E-4 0.0 0.0 3.837304677194738E-4 0.0 11 2.558203118129826E-4 0.0 0.0 6.715283185090793E-4 0.0 12 2.558203118129826E-4 0.0 0.0 9.273486303220618E-4 0.0 13 2.558203118129826E-4 0.0 0.0 0.001055258786228553 0.0 14 2.558203118129826E-4 0.0 0.0 0.001407011714971404 0.0 15 2.558203118129826E-4 0.0 0.0 0.002014584955527238 0.0 16 2.558203118129826E-4 0.0 0.0 0.0032936865145921507 0.0 17 2.558203118129826E-4 0.0 0.0 0.0047006982295635545 0.0 18 2.558203118129826E-4 0.0 0.0 0.005212338853189519 0.0 19 3.51752928742851E-4 0.0 0.0 0.006203642561464827 0.0 20 3.51752928742851E-4 0.0 0.0 0.007642631815412854 0.0 21 3.51752928742851E-4 0.0 0.0 0.01100027340795825 0.0 22 3.51752928742851E-4 0.0 0.0 0.01790742182690878 0.0 23 3.51752928742851E-4 0.0 0.0 0.02967515617030598 0.0 24 3.51752928742851E-4 0.0 0.0 0.04659127428893945 0.0 25 3.51752928742851E-4 0.0 0.0 0.05317864731812375 0.0 26 3.51752928742851E-4 0.0 0.0 0.06206840315362489 0.0 27 3.837304677194738E-4 0.0 0.0 0.133953910773073 0.0 28 3.837304677194738E-4 0.0 0.0 0.20887728459530025 0.0 29 4.476855456727195E-4 0.0 0.0 0.30260345133578176 0.0 30 4.476855456727195E-4 0.0 0.0 0.4858027721328539 0.0 31 4.476855456727195E-4 0.0 0.0 0.7618648661180387 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9110 0.0 29.973658 1 GTATTGG 1100 0.0 25.05909 1 ATTGGAC 1140 0.0 23.206142 3 TTGGACC 2030 0.0 21.416256 4 GGACCCT 2090 0.0 20.093302 6 GACCCTC 2120 0.0 19.285378 7 TATTGGA 1460 0.0 19.00685 2 CGCCGGA 285 0.0 18.824562 14 TGGACCC 2300 0.0 18.82174 5 ACGTTTA 240 0.0 18.5 26 GCCGGAA 305 0.0 17.590162 15 ACCGTCC 85 2.7255428E-5 17.411764 8 CGTCTGT 1010 0.0 17.217823 34 GTTATCA 420 0.0 16.738096 1 GTATCAA 16765 0.0 16.309574 2 TATACCG 325 0.0 15.938461 5 ACCCTCG 2580 0.0 15.703488 8 TTTTTAC 2340 0.0 15.653846 1 CTAGTAC 395 0.0 15.455698 3 CGTGTCT 320 0.0 15.03125 35 >>END_MODULE