##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088161_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2640349 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.126688933925024 31.0 31.0 33.0 30.0 34.0 2 31.27017413228327 31.0 31.0 34.0 28.0 34.0 3 31.318724910987147 31.0 31.0 34.0 28.0 34.0 4 35.27759284852116 37.0 35.0 37.0 33.0 37.0 5 35.15668799844263 37.0 35.0 37.0 32.0 37.0 6 35.203323878775116 37.0 35.0 37.0 32.0 37.0 7 35.03693451130892 37.0 35.0 37.0 32.0 37.0 8 35.09993186506784 37.0 35.0 37.0 32.0 37.0 9 36.59431613017824 39.0 35.0 39.0 32.0 39.0 10 36.44769574022222 38.0 35.0 39.0 32.0 39.0 11 36.480451258526806 38.0 35.0 39.0 32.0 39.0 12 36.309910924654275 38.0 35.0 39.0 32.0 39.0 13 36.35794321129517 38.0 35.0 39.0 32.0 39.0 14 37.28378483298988 39.0 36.0 41.0 32.0 41.0 15 37.33843063928291 39.0 36.0 41.0 32.0 41.0 16 37.316794863103325 39.0 36.0 41.0 32.0 41.0 17 37.41815494845568 39.0 36.0 41.0 32.0 41.0 18 37.43588631654376 39.0 36.0 41.0 32.0 41.0 19 37.53464333692251 39.0 36.0 41.0 32.0 41.0 20 37.49656730985184 39.0 36.0 41.0 32.0 41.0 21 37.370796815118 39.0 36.0 41.0 31.0 41.0 22 37.325609228174 39.0 36.0 41.0 31.0 41.0 23 37.199870926154084 39.0 36.0 41.0 31.0 41.0 24 37.13044260436783 39.0 36.0 41.0 31.0 41.0 25 37.04234099355805 39.0 36.0 40.0 31.0 41.0 26 36.7659832090379 39.0 35.0 40.0 30.0 41.0 27 36.60981105149357 38.0 35.0 40.0 30.0 41.0 28 36.46507412467064 38.0 35.0 40.0 30.0 41.0 29 36.326013341418125 38.0 35.0 40.0 30.0 41.0 30 36.14747671614624 38.0 35.0 40.0 30.0 41.0 31 35.882109902895415 38.0 35.0 40.0 29.0 41.0 32 35.58571082837913 38.0 34.0 40.0 28.0 41.0 33 35.73765930185744 38.0 34.0 40.0 29.0 41.0 34 35.70457125175498 38.0 34.0 40.0 29.0 41.0 35 35.611503252032215 38.0 34.0 40.0 28.0 41.0 36 35.52238889631636 38.0 34.0 40.0 27.0 41.0 37 35.37871357157709 38.0 34.0 40.0 27.0 41.0 38 35.25022108819705 38.0 34.0 40.0 26.0 41.0 39 35.18240884064947 38.0 34.0 40.0 25.0 41.0 40 35.009834684732965 38.0 34.0 40.0 25.0 41.0 41 34.8631074907143 38.0 33.0 40.0 24.0 41.0 42 34.62933422816453 38.0 33.0 40.0 23.0 41.0 43 34.324219639146186 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 3.0 15 6.0 16 21.0 17 77.0 18 176.0 19 440.0 20 882.0 21 1778.0 22 3260.0 23 5762.0 24 9703.0 25 15308.0 26 23440.0 27 34232.0 28 47692.0 29 64519.0 30 83579.0 31 101294.0 32 124763.0 33 152487.0 34 184497.0 35 222292.0 36 279551.0 37 369109.0 38 456996.0 39 458480.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.188115661982565 22.409423905703374 13.918160061416124 22.484300370897937 2 17.518479564633314 22.91931862037935 36.68848322702794 22.873718587959395 3 19.891802182211517 25.984443723159323 32.313569153168764 21.81018494146039 4 12.775280843555151 15.465531261208271 35.248484196596735 36.51070369863984 5 11.275024627426147 40.54168596651427 34.539827878814506 13.643461527245075 6 31.84147247201033 35.66687585618416 15.462577106284057 17.02907456552145 7 24.87830207294566 35.377406547392034 21.028848837786217 18.715442541876094 8 28.06174486781861 33.27419973647423 20.040381025387173 18.623674370319986 9 25.374486478870782 13.645658206547695 23.723416866482424 37.2564384480991 10 16.454756549228907 27.59525350625997 33.58904447858976 22.36094546592136 11 31.434708063214373 21.524957496149185 25.440235362825142 21.600099077811304 12 20.554934215135955 27.176558856423906 31.76602790009957 20.502479028340574 13 31.40111401939668 20.623675127795607 28.91504115554421 19.060169697263508 14 21.173488807729584 22.42923189320806 28.489832215362437 27.90744708369992 15 23.089447644989356 28.80456333613473 27.09732690640518 21.008662112470738 16 21.940697991061032 28.27789053644045 27.120089048834075 22.661322423664448 17 19.41368356986141 27.022033829618735 27.80234734120376 25.7619352593161 18 20.65961734604024 26.1932418782517 32.50986896050484 20.637271815203217 19 19.778786819469698 24.55868523441409 33.972251395554146 21.690276550562064 20 24.5416799067093 23.340361444642355 32.54641715924675 19.57154148940159 21 23.979254257675784 24.364582106380634 31.24480892488076 20.411354711062817 22 22.064469507629482 24.092534736885163 32.15162086527198 21.69137489021338 23 21.007033539884308 26.06636471163471 33.29677250999773 19.629829238483246 24 19.474092250683526 25.295557519100694 31.595671632803086 23.63467859741269 25 20.94393582060553 26.20865650715114 32.836757565003715 20.01065010723961 26 22.433435882907904 25.05763442635803 31.345098697179807 21.16383099355426 27 20.85523542531688 26.715597066902895 30.937122327389293 21.492045180390924 28 20.61557013864455 26.042049744181544 31.127551698658017 22.214828418515886 29 19.658954176133534 26.106094307987316 32.09651451380102 22.138437002078135 30 18.915984212693097 26.364658611418413 34.240094775349775 20.479262400538715 31 20.64208178540034 25.721183070874343 32.77422795244114 20.862507191284184 32 21.79378559425288 25.894417745532884 30.622050342587286 21.689746317626952 33 22.78604078475989 25.79802897268505 30.144196846704734 21.27173339585032 34 20.84413840746053 28.844709544079212 30.1136705791545 20.19748146930576 35 19.343692822426124 29.899418599586646 30.488090778908393 20.268797799078833 36 20.416013186135622 26.00027496365064 32.74692095628267 20.836790893931067 37 20.540011945390553 26.393556306382226 31.706187325993646 21.360244422233578 38 20.76592904953095 25.924072916118284 32.43949947525876 20.870498559092 39 21.932895992158613 25.314759526108098 32.15355242810704 20.598792053626244 40 19.93312247736947 26.278988118616137 31.345136570960886 22.442752833053508 41 21.013434208886782 25.654373721049755 31.2203045885222 22.111887481541263 42 18.345832312319317 27.524202292954453 31.70194546251272 22.428019932213505 43 19.123040173855806 27.248632661818572 31.23996108090256 22.388366083423062 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 237.0 1 313.0 2 389.0 3 1162.5 4 1936.0 5 1936.0 6 3411.5 7 4887.0 8 5234.5 9 5582.0 10 8548.5 11 11515.0 12 11515.0 13 21034.5 14 30554.0 15 50401.5 16 70249.0 17 69187.5 18 68126.0 19 68126.0 20 71894.5 21 75663.0 22 61111.5 23 46560.0 24 50609.0 25 54658.0 26 54658.0 27 58677.0 28 62696.0 29 65548.0 30 68400.0 31 72819.0 32 77238.0 33 77238.0 34 84042.5 35 90847.0 36 98524.0 37 106201.0 38 110921.0 39 115641.0 40 115641.0 41 122638.5 42 129636.0 43 148640.0 44 167644.0 45 216911.0 46 266178.0 47 266178.0 48 270607.0 49 275036.0 50 251294.5 51 227553.0 52 212869.0 53 198185.0 54 198185.0 55 172303.5 56 146422.0 57 119933.0 58 93444.0 59 82635.5 60 71827.0 61 71827.0 62 63013.0 63 54199.0 64 47541.0 65 40883.0 66 34529.0 67 28175.0 68 28175.0 69 23670.0 70 19165.0 71 15993.0 72 12821.0 73 10321.0 74 7821.0 75 7821.0 76 6114.0 77 4407.0 78 3444.0 79 2481.0 80 1997.0 81 1513.0 82 1513.0 83 1114.5 84 716.0 85 550.0 86 384.0 87 324.0 88 264.0 89 264.0 90 218.0 91 172.0 92 99.5 93 27.0 94 20.5 95 14.0 96 14.0 97 8.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2640349.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.733816891190685 #Duplication Level Percentage of deduplicated Percentage of total 1 71.75720026579368 27.794302557197526 2 14.007283706616056 10.851111244700503 3 5.575583345045958 6.478908730457479 4 2.7046889854523832 4.190517116405317 5 1.5509848142319855 3.003778089773957 6 0.9147842472228918 2.1259851316126324 7 0.6039707784858588 1.6375865479050802 8 0.4733887602378244 1.4668922845919727 9 0.32577545182262424 1.1356674028688194 >10 1.8023603808290107 12.988310190971411 >50 0.1665168917693607 4.515505040702425 >100 0.10061848137893172 7.395273995126889 >500 0.007584676115441928 2.026724308302522 >1k 0.007584676115441885 5.795088511661374 >5k 9.850228721353096E-4 2.833331586198286 >10k+ 6.895160104947167E-4 5.7610172615236825 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34454 1.304903253319921 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 33786 1.2796035675586825 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 30105 1.1401901794043137 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 19626 0.7433108274701564 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11759 0.4453577917161709 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11058 0.4188082711793024 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 10207 0.38657768348047933 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9738 0.36881488015410085 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9549 0.36165673553003785 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8232 0.31177696584807535 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7785 0.29484738570545027 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7759 0.29386266739737815 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7443 0.2818945525761935 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6325 0.23955166532909095 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6088 0.2305755792132025 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5862 0.2220161046891907 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5480 0.20754832031674603 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4227 0.1600924726238842 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4221 0.15986522993740598 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4159 0.15751705551046472 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3765 0.14259478576506363 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3715 0.14070109671107872 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3632 0.13755757288146378 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3549 0.1344140490518488 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3364 0.12740739955210467 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2894 0.10960672244464652 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2768 0.10483462602860455 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2767 0.10479675224752485 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 2653 0.10047914120443927 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.7873781079698175E-5 0.0 3 0.0 0.0 0.0 3.7873781079698175E-5 0.0 4 0.0 0.0 0.0 7.574756215939635E-5 0.0 5 0.0 0.0 0.0 7.574756215939635E-5 0.0 6 3.7873781079698175E-5 0.0 0.0 7.574756215939635E-5 0.0 7 3.7873781079698175E-5 0.0 0.0 7.574756215939635E-5 0.0 8 7.574756215939635E-5 0.0 0.0 7.574756215939635E-5 0.0 9 7.574756215939635E-5 0.0 0.0 1.893689053984909E-4 0.0 10 7.574756215939635E-5 0.0 0.0 1.893689053984909E-4 0.0 11 7.574756215939635E-5 0.0 0.0 3.029902486375854E-4 0.0 12 7.574756215939635E-5 0.0 0.0 5.302329351157745E-4 0.0 13 7.574756215939635E-5 0.0 0.0 6.817280594345671E-4 0.0 14 7.574756215939635E-5 0.0 0.0 8.332231837533599E-4 0.0 15 7.574756215939635E-5 0.0 0.0 0.0013255823377894362 0.0 16 7.574756215939635E-5 0.0 0.0 0.0023481744269412868 0.0 17 7.574756215939635E-5 0.0 0.0 0.0037873781079698176 0.0 18 7.574756215939635E-5 0.0 0.0 0.004620601291723177 0.0 19 7.574756215939635E-5 0.0 0.0 0.005453824475476537 0.0 20 7.574756215939635E-5 0.0 0.0 0.0069309019375847665 0.0 21 7.574756215939635E-5 0.0 0.0 0.00954419283208394 0.0 22 7.574756215939635E-5 0.0 0.0 0.016323599645349914 0.0 23 7.574756215939635E-5 0.0 0.0 0.02677676322334661 0.0 24 7.574756215939635E-5 0.0 0.0 0.0415854116255086 0.0 25 7.574756215939635E-5 0.0 0.0 0.04828907087661517 0.0 26 7.574756215939635E-5 0.0 0.0 0.05590170087363451 0.0 27 7.574756215939635E-5 0.0 0.0 0.11646187682007189 0.0 28 7.574756215939635E-5 0.0 0.0 0.18520278947972407 0.0 29 7.574756215939635E-5 0.0 0.0 0.2656845742740827 0.0 30 7.574756215939635E-5 0.0 0.0 0.437555792813753 0.0 31 7.574756215939635E-5 0.0 0.0 0.6766908465509673 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7855 0.0 28.756842 1 ATTGGAC 925 0.0 25.4 3 GTATTGG 1100 0.0 23.377274 1 TCGCTAA 45 0.0038271025 20.555557 14 TTGGACC 1615 0.0 20.504644 4 TATTGGA 1235 0.0 19.923077 2 GGACCCT 1650 0.0 19.060604 6 TGGACCC 1730 0.0 19.034681 5 TTGGACG 60 9.2411425E-4 18.5 4 TGCGACG 60 9.2411425E-4 18.5 22 CGTCTGT 830 0.0 17.831326 34 ATCACGT 95 3.6099718E-6 17.526316 23 TAATACG 65 0.0015806678 17.076923 4 GACCCTC 1840 0.0 16.790762 7 GTATCAA 13620 0.0 16.639133 2 GCCGATA 125 1.6599915E-7 16.279999 2 ATGCGCT 125 1.6599915E-7 16.279999 35 CGACGAG 115 1.2436121E-6 16.086956 24 ACGCACC 70 0.0025936887 15.857142 24 TATACCG 140 3.4784534E-8 15.857142 5 >>END_MODULE