##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088158_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1876418 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.984806157263467 31.0 31.0 33.0 28.0 34.0 2 31.13885605446121 31.0 31.0 34.0 28.0 34.0 3 31.194828657580562 31.0 31.0 34.0 28.0 34.0 4 35.15499158503063 35.0 35.0 37.0 32.0 37.0 5 35.00801100820819 35.0 35.0 37.0 32.0 37.0 6 35.06607482980871 36.0 35.0 37.0 32.0 37.0 7 34.88871349560706 36.0 35.0 37.0 32.0 37.0 8 34.96975620570683 36.0 35.0 37.0 32.0 37.0 9 36.417631892254285 38.0 35.0 39.0 32.0 39.0 10 36.270382185632414 38.0 35.0 39.0 32.0 39.0 11 36.313490917268965 38.0 35.0 39.0 32.0 39.0 12 36.16361599600942 38.0 35.0 39.0 31.0 39.0 13 36.2093302238627 38.0 35.0 39.0 32.0 39.0 14 37.12182253634318 39.0 36.0 41.0 31.0 41.0 15 37.18014056569485 39.0 36.0 41.0 31.0 41.0 16 37.15377543809535 39.0 36.0 41.0 31.0 41.0 17 37.25960153867635 39.0 36.0 41.0 32.0 41.0 18 37.27412122458855 39.0 36.0 40.0 32.0 41.0 19 37.3798108950138 39.0 36.0 41.0 32.0 41.0 20 37.33443507789842 39.0 36.0 41.0 31.0 41.0 21 37.2234065117687 39.0 36.0 41.0 31.0 41.0 22 37.18283932471336 39.0 36.0 40.0 31.0 41.0 23 37.06223133651457 39.0 36.0 40.0 31.0 41.0 24 36.976572384191584 39.0 35.0 40.0 31.0 41.0 25 36.882876843006194 39.0 35.0 40.0 31.0 41.0 26 36.580824741608744 38.0 35.0 40.0 30.0 41.0 27 36.39782873538839 38.0 35.0 40.0 30.0 41.0 28 36.22087882337517 38.0 35.0 40.0 30.0 41.0 29 36.07007766926132 38.0 35.0 40.0 30.0 41.0 30 35.8792886233238 38.0 34.0 40.0 29.0 41.0 31 35.589609564606604 38.0 34.0 40.0 28.0 41.0 32 35.27200762303495 37.0 34.0 40.0 27.0 41.0 33 35.38651462520611 38.0 34.0 40.0 27.0 41.0 34 35.32470696827679 38.0 34.0 40.0 27.0 41.0 35 35.221211371879825 38.0 34.0 40.0 26.0 41.0 36 35.09525809281301 38.0 34.0 40.0 25.0 41.0 37 34.91838918620478 38.0 33.0 40.0 25.0 41.0 38 34.75115885692847 38.0 33.0 40.0 24.0 41.0 39 34.62667966306015 38.0 33.0 40.0 24.0 41.0 40 34.417614838484816 38.0 33.0 40.0 23.0 41.0 41 34.23177511620545 38.0 33.0 40.0 21.0 41.0 42 33.994535865675985 38.0 33.0 40.0 19.0 41.0 43 33.64377819867428 37.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 5.0 15 5.0 16 29.0 17 63.0 18 201.0 19 431.0 20 944.0 21 1752.0 22 3030.0 23 5232.0 24 8391.0 25 13179.0 26 19626.0 27 28210.0 28 38824.0 29 50909.0 30 64367.0 31 78230.0 32 94665.0 33 114319.0 34 136369.0 35 161918.0 36 199712.0 37 257355.0 38 308975.0 39 289677.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.03516274092446 23.681663680480575 14.399936474708728 21.883237103886234 2 17.496901010329253 23.938109738874815 35.65532839697765 22.909660853818288 3 21.02079600600719 26.485942897584653 31.544304094290293 20.948957002117865 4 13.932450019132197 16.264606287085286 34.65336614762809 35.149577546154426 5 11.177680026518612 41.209261475854525 33.99615650670586 13.616901990920999 6 31.752786426052193 35.46203457864932 15.556182044725642 17.228996950572846 7 23.6871528625285 35.79287770635327 22.09401103592057 18.425958395197657 8 27.352007921475916 33.64666081864488 20.69437619975933 18.30695506011987 9 25.226735194396984 14.195824171373332 24.994697343555647 35.58274329067404 10 16.502826129359235 28.58856608708721 33.64202432507042 21.266583458483133 11 30.53514728594588 22.53261266945851 25.265585812969178 21.666654231626428 12 19.857195997906647 28.092034930383313 31.914690649951133 20.136078421758903 13 29.95505265884254 22.03363003339341 29.702870042815622 18.308447264948427 14 20.626534173089365 23.482720801015553 29.53451736233611 26.356227663558972 15 22.709758699820615 29.435712085473494 27.741260209612147 20.11326900509375 16 21.21073236347125 28.794223888280758 28.49183923837866 21.503204509869338 17 18.598308052896527 27.909772769180428 29.182463608854743 24.3094555690683 18 19.391787970484188 27.256506812447974 33.66003736907235 19.69166784799549 19 18.72770352874466 25.916720048517973 35.32789602316754 20.02768039956982 20 23.053765205833667 24.804707693061996 33.78921967280212 18.352307428302222 21 22.21940953454934 25.81050704054214 32.37967233313686 19.59041109177166 22 20.5361491949022 25.586463144139525 33.32775532956943 20.54963233138885 23 19.74762552906655 27.75186552250085 34.045345973018804 18.455162975413796 24 18.60832714245973 26.812362703832516 32.54706573908373 22.03224441462403 25 19.522515772072108 27.858131823506277 33.64586142320101 18.973490981220603 26 20.963399413137157 26.781559332728634 32.25390078330095 20.00114047083326 27 19.748158459362468 28.000370919485956 31.944961090759094 20.306509530392482 28 19.36343607874152 27.787571852327147 32.149179980153676 20.699812088777662 29 18.451272584253616 27.45704848280074 33.15902959788277 20.93264933506287 30 18.04992277840012 27.41153623552961 35.236658356506915 19.301882629563348 31 19.4474258933777 27.055965142095207 33.73065063328107 19.765958331246022 32 20.061574766390006 27.577224264529544 32.08522834464389 20.27597262443656 33 21.10883609089233 27.413188319446945 31.38250645645054 20.09546913321019 34 19.483878325618278 29.53387784598101 31.487227259597812 19.4950165688029 35 18.187578673834935 30.153356021952465 31.576013446897228 20.083051857315372 36 19.16470637139486 26.957266451291765 33.54412502971086 20.333902147602505 37 19.049753306566018 26.890703457332 33.12385619835239 20.935687037749585 38 19.3710569819731 26.741642853564613 33.53144128866809 20.3558588757942 39 20.514192466710508 25.853301343304103 33.378277121622155 20.254229068363234 40 18.74161300946804 26.523727655565015 32.85867008310515 21.875989251861792 41 19.24853630694227 26.16725058062756 32.476718940022955 22.107494172407215 42 16.983209498096908 27.70496765646034 32.90498172582016 22.4068411196226 43 17.539855192179992 27.384783134674684 32.576696663536595 22.498665009608736 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 323.0 1 396.0 2 469.0 3 1192.5 4 1916.0 5 1916.0 6 3260.5 7 4605.0 8 5207.0 9 5809.0 10 8752.0 11 11695.0 12 11695.0 13 20715.0 14 29735.0 15 44187.0 16 58639.0 17 57804.5 18 56970.0 19 56970.0 20 59730.5 21 62491.0 22 51862.5 23 41234.0 24 44159.5 25 47085.0 26 47085.0 27 49695.5 28 52306.0 29 54222.5 30 56139.0 31 59658.0 32 63177.0 33 63177.0 34 67474.0 35 71771.0 36 76887.5 37 82004.0 38 85038.5 39 88073.0 40 88073.0 41 92198.5 42 96324.0 43 107988.0 44 119652.0 45 151756.5 46 183861.0 47 183861.0 48 184886.5 49 185912.0 50 167528.0 51 149144.0 52 135082.0 53 121020.0 54 121020.0 55 106163.0 56 91306.0 57 74416.0 58 57526.0 59 49729.0 60 41932.0 61 41932.0 62 36532.0 63 31132.0 64 26063.0 65 20994.0 66 17871.5 67 14749.0 68 14749.0 69 12555.5 70 10362.0 71 8789.5 72 7217.0 73 5874.5 74 4532.0 75 4532.0 76 3632.5 77 2733.0 78 2167.0 79 1601.0 80 1285.5 81 970.0 82 970.0 83 720.5 84 471.0 85 368.5 86 266.0 87 232.0 88 198.0 89 198.0 90 128.5 91 59.0 92 34.5 93 10.0 94 7.5 95 5.0 96 5.0 97 3.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1876418.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.9543091064066 #Duplication Level Percentage of deduplicated Percentage of total 1 72.68327811078089 29.76693438615837 2 13.54456955818926 11.094169767986159 3 5.452837251225582 6.69951546880863 4 2.640744777972504 4.325995116328599 5 1.5167563836332487 3.1058854887215745 6 0.9262578755578341 2.276055080870342 7 0.6188019756031296 1.7739825169153949 8 0.41946320370742274 1.3743060562717913 9 0.31416410687384194 1.157973654874453 >10 1.6386056731307017 12.472880538654014 >50 0.1429599485687022 4.069144467864909 >100 0.08373917217072617 6.822976143174321 >500 0.008255762080356544 2.355761264465215 >1k 0.008517849765447227 6.889374040765454 >5k 5.24175370181368E-4 1.453868838235851 >10k+ 5.24175370181368E-4 4.361177169904825 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 25453 1.3564674821921343 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 23839 1.270452532431473 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 21895 1.1668508829056212 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10075 0.5369272731342377 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9247 0.49280064463248596 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 7178 0.3825373664076981 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5567 0.2966822957358115 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 5098 0.27168786485740387 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4902 0.26124243105747225 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4332 0.23086540419032434 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 4267 0.22740135726687763 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 4046 0.21562359772715886 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3987 0.2124793089812611 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 3961 0.21109369021188243 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3852 0.20528474998641028 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3615 0.19265430197322772 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3355 0.17879811427944095 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3164 0.1686191456274668 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2971 0.1583335909163097 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2843 0.15151208312859926 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2587 0.13786906755317846 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2494 0.13291281580117012 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 2363 0.12593142892468523 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2350 0.12523861953999588 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 2349 0.1251853265104044 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 2187 0.1165518557165834 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 2142 0.11415366938496646 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2095 0.11164889699416655 No Hit GGGGAGAAGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2080 0.11084950155029424 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2056 0.10957046884009854 No Hit GCCGAGGGGAGAAGAGTAAAAAAAAAAAAAAAAAAAAAAAAAA 1925 0.10258908196361366 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.0658605918297522E-4 0.0 3 0.0 0.0 0.0 2.1317211836595045E-4 0.0 4 0.0 0.0 0.0 4.796372663233885E-4 0.0 5 0.0 0.0 0.0 5.329302959148761E-4 0.0 6 5.329302959148761E-5 0.0 0.0 5.329302959148761E-4 0.0 7 5.329302959148761E-5 0.0 0.0 6.395163550978513E-4 0.0 8 5.329302959148761E-5 0.0 0.0 6.395163550978513E-4 0.0 9 5.329302959148761E-5 0.0 0.0 0.0011191536214212399 0.0 10 5.329302959148761E-5 0.0 0.0 0.0017053769469276036 0.0 11 5.329302959148761E-5 0.0 0.0 0.001971842094885042 0.0 12 5.329302959148761E-5 0.0 0.0 0.0022916002724339673 0.0 13 1.0658605918297522E-4 0.0 0.0 0.0026113584499828928 0.0 14 1.0658605918297522E-4 0.0 0.0 0.002877823597940331 0.0 15 1.0658605918297522E-4 0.0 0.0 0.0031975817754892567 0.0 16 1.0658605918297522E-4 0.0 0.0 0.004210149337727521 0.0 17 1.0658605918297522E-4 0.0 0.0 0.005862233255063637 0.0 18 1.0658605918297522E-4 0.0 0.0 0.006768214758118927 0.0 19 1.0658605918297522E-4 0.0 0.0 0.007514317172399753 0.0 20 1.0658605918297522E-4 0.0 0.0 0.00889993594177843 0.0 21 1.0658605918297522E-4 0.0 0.0 0.012097517717267688 0.0 22 1.0658605918297522E-4 0.0 0.0 0.017959750972331327 0.0 23 1.0658605918297522E-4 0.0 0.0 0.027978840535530996 0.0 24 1.0658605918297522E-4 0.0 0.0 0.04364699123542835 0.0 25 1.0658605918297522E-4 0.0 0.0 0.05569121592310455 0.0 26 1.0658605918297522E-4 0.0 0.0 0.07295815751074654 0.0 27 1.0658605918297522E-4 0.0 0.0 0.19910275855379772 0.0 28 1.0658605918297522E-4 0.0 0.0 0.3145354606489599 0.0 29 1.0658605918297522E-4 0.0 0.0 0.4326328142236964 0.0 30 1.0658605918297522E-4 0.0 0.0 0.6614197902599528 0.0 31 1.0658605918297522E-4 0.0 0.0 0.9907174201057547 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5550 0.0 29.266666 1 ATAGTCG 50 2.7029848E-4 22.2 30 GTATTGG 390 0.0 20.397434 1 GCGCATA 55 5.14476E-4 20.181818 26 ATCCCGT 50 0.0070364997 18.5 19 TGCCGTC 100 2.877332E-7 18.5 35 ATCCACG 235 0.0 17.319149 1 ATTGGAC 450 0.0 17.266665 3 GGACCCT 900 0.0 17.266665 6 CACGGCT 260 0.0 17.076923 4 TAGTCGC 65 0.0015804373 17.076923 31 GTATCAA 9605 0.0 17.026548 2 GCCGTCA 100 5.881777E-6 16.650002 13 GACCCTC 935 0.0 16.62032 7 TTGGACC 990 0.0 16.257576 4 TGGACCC 1020 0.0 16.142157 5 ACGGCTC 220 0.0 15.977273 5 TCCGACG 70 0.0025933133 15.857142 23 CGCATAG 70 0.0025933133 15.857142 27 TTAGCAC 130 2.591314E-7 15.653846 3 >>END_MODULE