##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088155_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1780197 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.819286292472125 31.0 31.0 33.0 28.0 34.0 2 30.976247572600112 31.0 31.0 34.0 28.0 34.0 3 31.02648358580539 31.0 31.0 34.0 27.0 34.0 4 34.99207166397876 35.0 35.0 37.0 32.0 37.0 5 34.82951268876422 35.0 35.0 37.0 32.0 37.0 6 34.91124577785492 35.0 35.0 37.0 32.0 37.0 7 34.73620616145292 35.0 35.0 37.0 31.0 37.0 8 34.80409078321107 35.0 35.0 37.0 32.0 37.0 9 36.25163507184879 38.0 35.0 39.0 32.0 39.0 10 36.06557532677563 38.0 35.0 39.0 31.0 39.0 11 36.12001424561439 38.0 35.0 39.0 31.0 39.0 12 35.946622199677904 37.0 35.0 39.0 30.0 39.0 13 35.99412143712185 38.0 35.0 39.0 30.0 39.0 14 36.848419023287875 38.0 36.0 40.0 31.0 41.0 15 36.90849102655493 38.0 36.0 40.0 31.0 41.0 16 36.87730964606726 38.0 36.0 40.0 31.0 41.0 17 36.974728077847566 38.0 36.0 40.0 31.0 41.0 18 36.97701209472884 38.0 36.0 40.0 31.0 41.0 19 37.087511663035045 39.0 36.0 40.0 31.0 41.0 20 37.044642250267806 39.0 36.0 40.0 31.0 41.0 21 36.94055657885054 39.0 36.0 40.0 31.0 41.0 22 36.8844088603677 39.0 36.0 40.0 31.0 41.0 23 36.7539547589396 39.0 35.0 40.0 30.0 41.0 24 36.676988558007906 38.0 35.0 40.0 30.0 41.0 25 36.58106939849915 38.0 35.0 40.0 30.0 41.0 26 36.30359954544357 38.0 35.0 40.0 30.0 41.0 27 36.11756564020723 38.0 35.0 40.0 29.0 41.0 28 35.97057291973866 38.0 34.0 40.0 29.0 41.0 29 35.818903188804384 38.0 34.0 40.0 29.0 41.0 30 35.63455224337531 38.0 34.0 40.0 28.0 41.0 31 35.35601902486073 38.0 34.0 40.0 27.0 41.0 32 35.07890138001581 37.0 33.0 40.0 26.0 41.0 33 35.251903581457555 38.0 34.0 40.0 27.0 41.0 34 35.226882193375225 38.0 34.0 40.0 27.0 41.0 35 35.14153152712874 38.0 33.0 40.0 26.0 41.0 36 35.03739361430224 38.0 33.0 40.0 25.0 41.0 37 34.89984254551603 38.0 33.0 40.0 25.0 41.0 38 34.78458957070482 38.0 33.0 40.0 25.0 41.0 39 34.72964508984118 38.0 33.0 40.0 24.0 41.0 40 34.57289502229248 38.0 33.0 40.0 24.0 41.0 41 34.43400084372685 38.0 33.0 40.0 23.0 41.0 42 34.20943468616114 38.0 33.0 40.0 22.0 41.0 43 33.881916439585055 37.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 1.0 13 2.0 14 7.0 15 10.0 16 26.0 17 77.0 18 191.0 19 437.0 20 893.0 21 1739.0 22 3154.0 23 5454.0 24 8704.0 25 13582.0 26 19828.0 27 28316.0 28 38843.0 29 51192.0 30 63730.0 31 77469.0 32 93216.0 33 110892.0 34 133147.0 35 157388.0 36 196398.0 37 248675.0 38 301181.0 39 225644.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.93063689018687 23.73203639821885 14.417730172559553 21.919596539034725 2 18.242587758545824 24.040260712718872 35.58521893925223 22.131932589483075 3 20.499023422688612 26.583630912758533 32.09324585986832 20.824099804684536 4 13.601921585082998 16.61546446825829 35.577523161762436 34.20509078489628 5 11.062258839892438 41.069162570209926 34.76536585557666 13.103212734320977 6 31.380515751908355 37.11038722118957 15.295498194862702 16.213598832039374 7 24.114465983259155 35.372714368128925 21.901003091230915 18.611816557381008 8 27.426121940436932 34.24632217670292 20.327076160672107 18.00047972218805 9 25.04649766289911 13.632142959458982 23.74518101086565 37.57617836677626 10 16.05985180291844 28.071443778413286 34.185654733717676 21.683049684950596 11 31.742666682395264 22.019248431493818 25.102727394777098 21.135357491333824 12 19.87684509073996 27.583576424406964 32.243229260581835 20.296349224271246 13 30.945563889839157 21.066095493925673 28.991566663689465 18.996773952545702 14 20.603506241163196 22.51284548844875 29.04240373396877 27.841244536419286 15 22.766581451378695 29.30518363978818 27.11565068360412 20.812584225229006 16 21.422123506555735 28.524820567611336 27.513640344298974 22.53941558153395 17 19.227310235889625 27.2918109624946 28.572455745066417 24.90842305654936 18 20.157600535221665 26.404830476627023 32.94562343381098 20.491945554340337 19 19.646814369420913 24.99835692341915 34.23873874632976 21.116089960830177 20 23.679457947631636 24.111825826018134 32.92388426674127 19.284831959608965 21 23.29433203179199 24.831577628768052 31.66233849399814 20.211751845441825 22 21.65237892210806 24.514983454078397 32.44803805421535 21.384599569598194 23 20.649568558985326 26.51830106443276 33.292158115085016 19.539972261496903 24 19.52884989694961 25.65334061342649 32.05735095610205 22.760458533521852 25 20.618279887001272 26.484709276557595 33.02516519239163 19.871845644049507 26 21.93077507714034 25.546217637710882 31.732892483247642 20.79011480190114 27 20.662713171632127 26.832479776114663 31.452249385882574 21.05255766637063 28 20.407572869744193 26.407133592518132 31.633746152813423 21.551547384924252 29 19.6353549635237 26.152386505538434 32.43461257377695 21.77764595716092 30 18.986999753398077 26.584698210366604 34.08471084941723 20.343591186818088 31 20.393192438814356 25.887022616036315 33.15694836020957 20.562836584939756 32 21.248996599814514 26.18412456598905 31.21418584572382 21.352692988472626 33 22.074354692205414 26.117952114288475 30.749911386211753 21.05778180729436 34 20.52806515233988 28.59402639146117 30.932194582959077 19.945713873239875 35 19.36555336291433 29.344729824845228 31.107568432033084 20.18214838020736 36 20.29780973678756 26.140870926082897 32.875069444561476 20.68624989256807 37 20.226750185513175 26.459150307522144 32.10099781091643 21.21310169604825 38 20.62855964817377 26.070710151741633 32.529602060895506 20.77112813918909 39 21.369095667501966 25.689404037867718 32.48882005755543 20.452680237074887 40 19.840107583598893 26.330400511853462 31.685257305792565 22.14423459875508 41 20.686755454592948 25.869777333632175 31.5762806026524 21.867186609122474 42 18.44689099015446 27.428312709211394 31.86192314670792 22.262873153926222 43 19.17518117376897 27.219627940053826 31.448373410358517 22.156817475818688 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 175.0 1 247.5 2 320.0 3 674.5 4 1029.0 5 1029.0 6 2068.5 7 3108.0 8 3325.5 9 3543.0 10 5571.0 11 7599.0 12 7599.0 13 13966.5 14 20334.0 15 34142.5 16 47951.0 17 46622.0 18 45293.0 19 45293.0 20 48414.0 21 51535.0 22 42314.5 23 33094.0 24 35970.5 25 38847.0 26 38847.0 27 43188.5 28 47530.0 29 50219.5 30 52909.0 31 56495.5 32 60082.0 33 60082.0 34 64944.0 35 69806.0 36 75078.5 37 80351.0 38 83664.5 39 86978.0 40 86978.0 41 91270.5 42 95563.0 43 106791.5 44 118020.0 45 144812.0 46 171604.0 47 171604.0 48 174016.0 49 176428.0 50 159010.0 51 141592.0 52 132348.0 53 123104.0 54 123104.0 55 106718.0 56 90332.0 57 75223.5 58 60115.0 59 52518.0 60 44921.0 61 44921.0 62 39459.5 63 33998.0 64 29532.0 65 25066.0 66 21288.5 67 17511.0 68 17511.0 69 14689.5 70 11868.0 71 9987.5 72 8107.0 73 6521.5 74 4936.0 75 4936.0 76 4002.0 77 3068.0 78 2365.0 79 1662.0 80 1260.5 81 859.0 82 859.0 83 663.5 84 468.0 85 360.0 86 252.0 87 191.5 88 131.0 89 131.0 90 106.5 91 82.0 92 49.5 93 17.0 94 12.0 95 7.0 96 7.0 97 4.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1780197.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.07837978370533 #Duplication Level Percentage of deduplicated Percentage of total 1 77.41512894322705 37.21993970336989 2 12.652914680127312 12.166632747239627 3 4.322757865134805 6.234935830588513 4 1.8349132738454483 3.5287862900041427 5 0.9612057300003837 2.3106607068616083 6 0.579812967747076 1.672588084011673 7 0.3576805455852044 1.203769077832187 8 0.26836574286863596 1.0322072085259595 9 0.19334782650712212 0.8366265209847047 >10 1.2257993299737053 11.318659135067787 >50 0.11626924621668035 3.8347091466160386 >100 0.05948488563600911 5.4300279314993825 >500 0.005396879085787168 1.879714129250425 >1k 0.005748849460947201 4.978895902249047 >5k 7.039407503200654E-4 2.084979995183155 >10k+ 4.6929383354671025E-4 4.266867590715974 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 23461 1.317887851737757 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 22710 1.2757015094396857 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 19214 1.0793187495541223 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10259 0.5762845348014854 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7751 0.43540125053575535 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6365 0.3575446987046939 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6100 0.34265870574998164 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 5802 0.3259189853707202 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 5800 0.32580663825408085 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 5145 0.2890129575546976 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 4442 0.24952294605597022 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 4334 0.24345620175744595 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4274 0.24008578825826582 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3501 0.19666362767716156 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 3110 0.17469976637417095 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3105 0.1744188985825726 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2972 0.16694781532605663 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2838 0.15942055851122094 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2750 0.15447728537909006 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 2559 0.14374813574003326 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2179 0.122402183578559 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2146 0.12054845615400993 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2073 0.11644778639667408 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2054 0.11538048878860037 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1911 0.10734766994888768 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1884 0.10583098387425662 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1787 0.10038214871724871 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 5.6173558319669115E-5 0.0 0.0 0.0 0.0 5 5.6173558319669115E-5 0.0 0.0 0.0 0.0 6 1.1234711663933823E-4 0.0 0.0 0.0 0.0 7 1.1234711663933823E-4 0.0 0.0 0.0 0.0 8 1.6852067495900735E-4 0.0 0.0 0.0 0.0 9 1.6852067495900735E-4 0.0 0.0 0.0 0.0 10 1.6852067495900735E-4 0.0 0.0 0.0 0.0 11 1.6852067495900735E-4 0.0 0.0 1.6852067495900735E-4 0.0 12 1.6852067495900735E-4 0.0 0.0 3.370413499180147E-4 0.0 13 1.6852067495900735E-4 0.0 0.0 3.370413499180147E-4 0.0 14 1.6852067495900735E-4 0.0 0.0 3.370413499180147E-4 0.0 15 1.6852067495900735E-4 0.0 0.0 7.302562581556985E-4 0.0 16 1.6852067495900735E-4 0.0 0.0 0.001460512516311397 0.0 17 1.6852067495900735E-4 0.0 0.0 0.0026401572410244484 0.0 18 1.6852067495900735E-4 0.0 0.0 0.003370413499180147 0.0 19 1.6852067495900735E-4 0.0 0.0 0.004213016873975184 0.0 20 1.6852067495900735E-4 0.0 0.0 0.005392661598688235 0.0 21 1.6852067495900735E-4 0.0 0.0 0.008482207306270036 0.0 22 1.6852067495900735E-4 0.0 0.0 0.014380430929835293 0.0 23 1.6852067495900735E-4 0.0 0.0 0.024997233452252757 0.0 24 1.6852067495900735E-4 0.0 0.0 0.03758011051585864 0.0 25 1.6852067495900735E-4 0.0 0.0 0.0427480778812682 0.0 26 1.6852067495900735E-4 0.0 0.0 0.050556202487702206 0.0 27 1.6852067495900735E-4 0.0 0.0 0.10740384350720734 0.0 28 1.6852067495900735E-4 0.0 0.0 0.16958797256708105 0.0 29 1.6852067495900735E-4 0.0 0.0 0.2455346234152737 0.0 30 1.6852067495900735E-4 0.0 0.0 0.39928165253620806 0.0 31 1.6852067495900735E-4 0.0 0.0 0.624930836306319 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5065 0.0 30.023693 1 ATTGGAC 640 0.0 20.234375 3 GTATTGG 675 0.0 18.362965 1 GTATCAA 8550 0.0 17.829239 2 CGGGCGT 140 1.87174E-9 17.178572 6 TCCGATC 65 0.0015803949 17.076923 31 TTGGACC 1065 0.0 17.023474 4 TATACTG 305 0.0 16.983606 5 GGCGTCG 120 1.0421172E-7 16.958332 8 TTGCGTG 90 4.4481625E-5 16.444445 7 GGACCCT 1090 0.0 16.29358 6 GACCGTC 115 1.2430555E-6 16.086956 22 GACCCTC 1050 0.0 16.033333 7 CGGGATA 150 4.6748028E-9 16.033333 24 TGGACCC 1120 0.0 15.857143 5 GTATACG 175 1.3278623E-10 15.857143 1 TATTGGA 810 0.0 15.759259 2 TGCGTGC 165 9.749783E-10 15.696971 8 ACGGACC 110 1.45267895E-5 15.136364 8 ACGTTTA 135 3.9754013E-7 15.074075 26 >>END_MODULE