##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088149_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3065274 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.675610075967107 31.0 31.0 34.0 30.0 34.0 2 31.841826211947122 31.0 31.0 34.0 30.0 34.0 3 31.937762170690124 31.0 31.0 34.0 30.0 34.0 4 35.627912545501644 37.0 35.0 37.0 33.0 37.0 5 35.536716130434016 37.0 35.0 37.0 33.0 37.0 6 35.56662764894753 37.0 35.0 37.0 33.0 37.0 7 35.42672400574957 37.0 35.0 37.0 33.0 37.0 8 35.49475283449375 37.0 35.0 37.0 33.0 37.0 9 37.001282103981566 39.0 37.0 39.0 33.0 39.0 10 36.882827440548546 39.0 37.0 39.0 33.0 39.0 11 36.959478010774895 39.0 37.0 39.0 33.0 39.0 12 36.84930547807472 39.0 37.0 39.0 32.0 39.0 13 36.863989320367445 39.0 37.0 39.0 33.0 39.0 14 37.89679193442413 40.0 37.0 41.0 33.0 41.0 15 37.897040199342705 40.0 37.0 41.0 33.0 41.0 16 37.77900474802579 40.0 37.0 41.0 32.0 41.0 17 37.80970510303484 40.0 37.0 41.0 32.0 41.0 18 37.79311572146568 40.0 37.0 41.0 32.0 41.0 19 37.83206199511039 40.0 37.0 41.0 32.0 41.0 20 37.75356297675183 40.0 37.0 41.0 32.0 41.0 21 37.67513507764722 40.0 37.0 41.0 32.0 41.0 22 37.573059047902404 39.0 36.0 41.0 32.0 41.0 23 37.35304511113851 39.0 36.0 41.0 31.0 41.0 24 37.20805089528701 39.0 36.0 41.0 31.0 41.0 25 37.102352024647715 39.0 36.0 41.0 31.0 41.0 26 37.235806325959764 39.0 36.0 41.0 31.0 41.0 27 37.14035743623572 39.0 36.0 41.0 31.0 41.0 28 37.05849395518965 39.0 36.0 41.0 31.0 41.0 29 36.97652053291158 39.0 36.0 41.0 31.0 41.0 30 36.77688160993112 39.0 35.0 40.0 30.0 41.0 31 36.590525675681846 39.0 35.0 40.0 30.0 41.0 32 36.429958953098485 38.0 35.0 40.0 30.0 41.0 33 36.216794974935354 38.0 35.0 40.0 30.0 41.0 34 36.082758017717175 38.0 35.0 40.0 30.0 41.0 35 35.8583235952153 38.0 35.0 40.0 29.0 41.0 36 35.755581393376254 38.0 35.0 40.0 28.0 41.0 37 35.58057648353785 38.0 35.0 40.0 27.0 41.0 38 35.44581724178654 38.0 34.0 40.0 26.0 41.0 39 35.3258129615819 38.0 34.0 40.0 25.0 41.0 40 35.097633360019366 38.0 34.0 40.0 24.0 41.0 41 34.920129489239784 38.0 34.0 40.0 24.0 41.0 42 34.69452649257456 38.0 33.0 40.0 23.0 41.0 43 34.36049795222222 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 6.0 13 13.0 14 11.0 15 34.0 16 44.0 17 115.0 18 229.0 19 438.0 20 1009.0 21 1998.0 22 3730.0 23 6420.0 24 10417.0 25 16439.0 26 24122.0 27 34259.0 28 47294.0 29 62023.0 30 79031.0 31 98858.0 32 123521.0 33 153721.0 34 191199.0 35 236129.0 36 307086.0 37 429534.0 38 577936.0 39 659653.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.314185942268125 22.453653409124275 13.46411446415557 22.768046184452025 2 17.776029157589175 22.390004939199564 36.23669531663401 23.597270586577253 3 19.813856771042325 26.022371898890604 31.696187681753734 22.467583648313333 4 13.104701243673485 15.427429978527204 35.03448631345844 36.433382464340866 5 11.158415202034142 41.15429811494829 34.09845253638011 13.588834146637463 6 31.99430132510177 36.041443603410336 15.435194374140778 16.529060697347123 7 25.711241474660994 34.8103954165272 21.004158192709692 18.474204916102117 8 28.533338292107004 33.95872603884677 19.451246446484067 18.05668922256216 9 25.86708398661914 13.644750844459583 22.788957854991104 37.699207313930174 10 16.347641352779554 28.142639124593753 32.973789618807324 22.535929903819365 11 31.822049187119976 21.680965551529816 24.606381028253917 21.89060423309629 12 20.22566335016054 27.266860972298073 31.81418692097346 20.69328875656793 13 31.165827263729117 20.720725129303286 28.32099185912907 19.79245574783853 14 20.998840560419723 21.974805514939284 28.21291016724769 28.813443757393305 15 23.482337957389777 28.39824433313303 26.569566048581628 21.549851660895566 16 22.116261058554635 28.180743385420033 26.705508218841125 22.997487337184214 17 19.86683735287612 26.795777473726655 27.56494199213512 25.7724431812621 18 20.923219261964835 26.384231882696298 31.48093775629846 21.21161109904041 19 20.323370765549832 24.419546180863442 32.807670700890036 22.449412352696694 20 24.894577124263606 23.495289491249398 31.481166120875326 20.12896726361167 21 23.81552187504282 24.649346192216424 30.39297628857975 21.14215564416101 22 22.332489689339354 23.972962939039057 31.60001357138057 22.094533800241024 23 21.28661255078665 26.01359617443661 32.54322452087481 20.156566753901934 24 20.19724827209574 25.087969297361347 30.833034828207857 23.88174760233506 25 21.31104756051172 26.203954361013075 31.771287004032917 20.713711074442283 26 22.86950530360418 24.93287712615577 30.48712774127207 21.710489828967983 27 21.407450035461757 26.63934773857084 29.99617652451298 21.957025701454423 28 21.209294829760733 25.76239513987983 30.32521725627138 22.70309277408806 29 20.203903468335945 25.791984664339957 31.64738290932556 22.356728957998534 30 19.676511789810633 25.937974875981723 33.27036995713923 21.115143377068414 31 21.023406064188716 25.517001090277734 32.07126018750689 21.388332658026656 32 22.217230825042066 25.599147090928902 30.206174064700253 21.977448019328776 33 23.18686681843124 25.44943779903526 29.798510671476674 21.565184711056826 34 21.271573112224225 28.130535802019658 29.971154291590246 20.626736794165872 35 20.051323307475936 29.00931531732563 30.06837235431482 20.870989020883616 36 20.962236981098588 25.376002275816127 32.33228089886907 21.32947984421621 37 21.090740990854325 25.83217682986904 31.331587323025612 21.745494856251025 38 21.229880265189998 25.314409087083245 32.17454622327401 21.281164424452754 39 22.219090365168007 24.720498069666856 32.12835133172434 20.932060233440794 40 20.65586958947226 25.435246571758345 30.9999367103887 22.908947128380692 41 21.592653707303164 25.054693316160314 31.03523534927057 22.317417627265947 42 19.247186385295407 26.969040940548872 31.176527775331014 22.607244898824703 43 20.137645117532724 26.458058888047205 30.769875710947865 22.634420283472213 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 222.0 1 367.0 2 512.0 3 1097.0 4 1682.0 5 1682.0 6 3199.5 7 4717.0 8 5226.5 9 5736.0 10 9513.5 11 13291.0 12 13291.0 13 26019.0 14 38747.0 15 56329.0 16 73911.0 17 69802.5 18 65694.0 19 65694.0 20 70655.5 21 75617.0 22 59973.0 23 44329.0 24 49522.0 25 54715.0 26 54715.0 27 60404.0 28 66093.0 29 70924.5 30 75756.0 31 81549.0 32 87342.0 33 87342.0 34 95409.5 35 103477.0 36 114527.5 37 125578.0 38 134043.5 39 142509.0 40 142509.0 41 149306.5 42 156104.0 43 179011.0 44 201918.0 45 255571.5 46 309225.0 47 309225.0 48 312555.0 49 315885.0 50 288809.5 51 261734.0 52 245032.0 53 228330.0 54 228330.0 55 201086.0 56 173842.0 57 146041.5 58 118241.0 59 105298.0 60 92355.0 61 92355.0 62 81302.5 63 70250.0 64 61133.0 65 52016.0 66 44856.5 67 37697.0 68 37697.0 69 31933.0 70 26169.0 71 21750.0 72 17331.0 73 14017.5 74 10704.0 75 10704.0 76 8318.5 77 5933.0 78 4659.0 79 3385.0 80 2636.5 81 1888.0 82 1888.0 83 1422.0 84 956.0 85 749.0 86 542.0 87 436.5 88 331.0 89 331.0 90 323.0 91 315.0 92 207.0 93 99.0 94 81.5 95 64.0 96 64.0 97 40.0 98 16.0 99 16.0 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3065274.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.11288879835339 #Duplication Level Percentage of deduplicated Percentage of total 1 73.74584262521537 31.05650469816565 2 13.560406968688413 11.421358214655829 3 5.124305022570614 6.4739786275308004 4 2.5173585308701707 4.240529595044871 5 1.328940567708985 2.798276317377455 6 0.7978075326652281 2.0158787943371665 7 0.5521406913087725 1.6276567673892615 8 0.3702063561976714 1.247236728879691 9 0.27046632030235723 1.02511062635337 >10 1.4758469244198231 11.656361084731277 >50 0.14930451416263207 4.3966958455229115 >100 0.09300319411454955 7.245679752196979 >500 0.007534934714709015 2.1816748368722085 >1k 0.005592941231521169 4.898700901117415 >5k 6.991176539401461E-4 2.264700893396579 >10k+ 5.437581752867803E-4 5.449656316428704 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 37575 1.2258284251261062 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36039 1.1757187122586756 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 30220 0.9858825018579089 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 23023 0.7510910933247729 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17815 0.5811878481336415 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 11847 0.3864907345966462 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 10070 0.32851875558269833 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9857 0.3215699477436601 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9810 0.3200366427275343 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 8634 0.2816713938134079 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 8595 0.28039907688513327 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7485 0.24418697969577924 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7342 0.239521817625439 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6350 0.20715929473189018 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5830 0.19019506902156216 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5326 0.17375281948693658 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4805 0.15675597026562715 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4424 0.14432641258171375 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4405 0.14370656587306713 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4278 0.13956337997842932 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4268 0.13923714486861535 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3898 0.12716644580549732 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3739 0.12197930755945471 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3510 0.11450852354471411 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3371 0.10997385551829951 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3295 0.1074944686837131 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3249 0.1059937871785687 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 3198 0.10432998811851729 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3174 0.1035470238549637 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 3069 0.10012155520191669 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 6.524702196280006E-5 0.0 0.0 0.0 0.0 3 6.524702196280006E-5 0.0 0.0 0.0 0.0 4 6.524702196280006E-5 0.0 0.0 3.262351098140003E-5 0.0 5 6.524702196280006E-5 0.0 0.0 3.262351098140003E-5 0.0 6 9.787053294420009E-5 0.0 0.0 3.262351098140003E-5 0.0 7 9.787053294420009E-5 0.0 0.0 3.262351098140003E-5 0.0 8 1.6311755490700015E-4 0.0 0.0 3.262351098140003E-5 0.0 9 1.6311755490700015E-4 0.0 0.0 6.524702196280006E-5 0.0 10 1.6311755490700015E-4 0.0 0.0 1.6311755490700015E-4 0.0 11 1.6311755490700015E-4 0.0 0.0 3.9148213177680037E-4 0.0 12 1.6311755490700015E-4 0.0 0.0 6.524702196280006E-4 0.0 13 1.6311755490700015E-4 0.0 0.0 6.850937306094007E-4 0.0 14 1.6311755490700015E-4 0.0 0.0 8.482112855164009E-4 0.0 15 1.6311755490700015E-4 0.0 0.0 0.0015333050161258014 0.0 16 1.6311755490700015E-4 0.0 0.0 0.0029361159883260026 0.0 17 1.6311755490700015E-4 0.0 0.0 0.005252385268005405 0.0 18 1.6311755490700015E-4 0.0 0.0 0.0064268316633358065 0.0 19 1.6311755490700015E-4 0.0 0.0 0.007666525080629007 0.0 20 1.6311755490700015E-4 0.0 0.0 0.01017853542619681 0.0 21 1.6311755490700015E-4 0.0 0.0 0.013310392480411213 0.0 22 1.6311755490700015E-4 0.0 0.0 0.024271892170161624 0.0 23 1.6311755490700015E-4 0.0 0.0 0.039996424463196435 0.0 24 1.6311755490700015E-4 0.0 0.0 0.06136482415601346 6.524702196280006E-5 25 1.6311755490700015E-4 0.0 0.0 0.06906397274762387 6.524702196280006E-5 26 1.6311755490700015E-4 0.0 0.0 0.07735034453689947 6.524702196280006E-5 27 1.6311755490700015E-4 0.0 0.0 0.11512837025336072 6.524702196280006E-5 28 1.6311755490700015E-4 0.0 0.0 0.18608450663790577 6.524702196280006E-5 29 1.6311755490700015E-4 0.0 0.0 0.28056219444004027 6.524702196280006E-5 30 1.6311755490700015E-4 0.0 0.0 0.4404826452708632 6.524702196280006E-5 31 1.9574106588840019E-4 0.0 0.0 0.6413782258943246 6.524702196280006E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10010 0.0 25.44905 1 TAAGACG 45 0.0038272408 20.555557 4 GTACCGA 55 5.145784E-4 20.181818 6 GTATTGG 1540 0.0 18.74026 1 CTAGACG 50 0.0070374906 18.5 4 ATTGGAC 1480 0.0 18.5 3 ACGTTTA 170 5.456968E-12 17.411764 26 TCACGTT 175 7.2759576E-12 16.914286 24 TTGGACC 1985 0.0 16.030228 4 AACCCGC 140 3.479181E-8 15.857143 6 CGCGATA 70 0.0025938158 15.857143 14 GTATCAA 16055 0.0 15.843974 2 TATTGGA 1770 0.0 15.573446 2 TGCGACG 180 2.0190782E-10 15.416667 22 GACGTAT 85 5.367776E-4 15.235293 28 TGGACCC 2140 0.0 15.214954 5 CGTCTGT 865 0.0 15.184971 34 CAATGCG 195 4.1836756E-11 15.179487 19 CGAACTA 75 0.0041064816 14.8 24 GGACCCT 2195 0.0 14.665148 6 >>END_MODULE