##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088145_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2643401 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.39239184671565 31.0 31.0 34.0 30.0 34.0 2 31.566065837154483 31.0 31.0 34.0 30.0 34.0 3 31.64727069407933 31.0 31.0 34.0 30.0 34.0 4 35.38141356532739 37.0 35.0 37.0 33.0 37.0 5 35.283383035718 37.0 35.0 37.0 33.0 37.0 6 35.31479559854899 37.0 35.0 37.0 32.0 37.0 7 35.1709460653151 37.0 35.0 37.0 32.0 37.0 8 35.24658460823765 37.0 35.0 37.0 32.0 37.0 9 36.67792627754926 39.0 35.0 39.0 32.0 39.0 10 36.54227376020513 38.0 35.0 39.0 32.0 39.0 11 36.62755594024516 38.0 35.0 39.0 32.0 39.0 12 36.50786543547498 38.0 35.0 39.0 32.0 39.0 13 36.532475776471294 38.0 35.0 39.0 32.0 39.0 14 37.45705210824994 39.0 36.0 41.0 32.0 41.0 15 37.47482315395961 39.0 36.0 41.0 32.0 41.0 16 37.33272515218085 39.0 36.0 41.0 32.0 41.0 17 37.40118809064535 39.0 36.0 41.0 32.0 41.0 18 37.386317853401735 39.0 36.0 40.0 32.0 41.0 19 37.44807995457367 39.0 36.0 41.0 32.0 41.0 20 37.372852246026994 39.0 36.0 41.0 32.0 41.0 21 37.29229012170306 39.0 36.0 41.0 31.0 41.0 22 37.19522085374107 39.0 36.0 40.0 31.0 41.0 23 36.96864531715014 39.0 36.0 40.0 31.0 41.0 24 36.82248323277475 39.0 35.0 40.0 30.0 41.0 25 36.71438347795132 39.0 35.0 40.0 30.0 41.0 26 36.81812596726717 39.0 36.0 40.0 31.0 41.0 27 36.70292475488963 39.0 35.0 40.0 30.0 41.0 28 36.60225557908164 39.0 35.0 40.0 30.0 41.0 29 36.51778561028009 39.0 35.0 40.0 30.0 41.0 30 36.30257800462359 38.0 35.0 40.0 30.0 41.0 31 36.09041496163465 38.0 35.0 40.0 30.0 41.0 32 35.9405784442088 38.0 35.0 40.0 29.0 41.0 33 35.71200358931543 38.0 34.0 40.0 28.0 41.0 34 35.56501113527611 38.0 34.0 40.0 27.0 41.0 35 35.333300925587906 38.0 34.0 40.0 27.0 41.0 36 35.237997564501185 38.0 34.0 40.0 26.0 41.0 37 35.05987967773334 38.0 34.0 40.0 25.0 41.0 38 34.91361280411107 38.0 33.0 40.0 25.0 41.0 39 34.782798750549006 38.0 33.0 40.0 24.0 41.0 40 34.545702297910914 38.0 33.0 40.0 23.0 41.0 41 34.3566609833317 38.0 33.0 40.0 22.0 41.0 42 34.108797341001235 38.0 33.0 40.0 21.0 41.0 43 33.776622994392454 37.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 2.0 13 9.0 14 13.0 15 9.0 16 40.0 17 125.0 18 231.0 19 587.0 20 1109.0 21 2198.0 22 4166.0 23 7106.0 24 11667.0 25 18054.0 26 26175.0 27 36336.0 28 49371.0 29 64002.0 30 80358.0 31 99084.0 32 120795.0 33 147556.0 34 179266.0 35 218401.0 36 280291.0 37 375145.0 38 485279.0 39 436025.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.34885399528865 24.214827791924115 14.808460767019458 21.62785744576778 2 17.940940477816266 23.506762689429262 36.08200193614211 22.470294896612355 3 20.186267615091317 26.20071642554421 32.65815515693609 20.95486080242839 4 13.379090043470516 16.16394939700787 34.982774085354436 35.47418647416718 5 10.661984314903414 41.85732698141523 34.159024680704896 13.321664022976462 6 31.244937866029403 36.794984945530395 15.0984281234667 16.861649064973495 7 24.284548579651744 36.021927811936216 20.862290662672823 18.83123294573922 8 28.26094111336116 34.2780380275259 19.704199249376085 17.75682160973685 9 25.25496509988458 13.824538917856202 23.723264082899263 37.197231899359956 10 16.555074315247666 28.6362152393829 32.772742387553 22.035968057816426 11 31.216376175994487 21.929552118653206 24.871027891719795 21.983043813632513 12 19.610115907499466 28.200072558041704 31.731091877471485 20.45871965698734 13 31.262150540156412 21.037557298344066 29.082458544882144 18.61783361661738 14 20.453801750093913 22.809933112683247 28.71085393400396 28.025411203218887 15 23.03676211062945 29.270700888741434 26.90026976610813 20.792267234520985 16 21.45834097815655 28.79805220622978 27.055183833251178 22.688422982362493 17 19.063509471321225 27.3022519095665 28.216604291214235 25.417634327898035 18 20.23351735132127 26.591160402829537 32.66144637154938 20.513875874299814 19 19.49666357847334 24.62063077073815 34.05215478090536 21.830550869883155 20 24.60996269578471 23.696556065462637 32.5301382574948 19.16334298125786 21 23.66557325203403 24.67620311863391 31.200449723670374 20.457773905661682 22 21.764423937193033 24.093204171444288 32.541979064092054 21.600392827270625 23 20.663720714337323 26.503167699490167 33.60364167222453 19.229469913947977 24 19.362556040494802 25.285077822093584 31.842690533899322 23.509675603512292 25 20.51391370435284 26.560972020514484 32.834405373986016 20.090708901146666 26 22.266580061065273 25.253830198293787 31.372765615205562 21.106824125435377 27 20.70836017690846 27.011527952058728 30.997945449820136 21.282166421212672 28 20.57553886073282 26.257348014924712 31.141775311426457 22.025337812916014 29 19.391723011378144 26.08979871007085 32.497831392210266 22.020646886340742 30 18.719899099682568 26.313941774252186 34.512357375971334 20.453801750093913 31 20.22069296334533 25.67355463662153 33.27092635585747 20.834826044175667 32 21.561995323448848 25.88990470987943 31.077880351864888 21.470219614806833 33 22.668827014894827 25.884268031978504 30.487996335024466 20.95890861810221 34 20.62369651823541 28.911920665839197 30.66057703693083 19.80380577899456 35 19.20162699492056 29.749705020161528 30.93257511819054 20.11609286672737 36 20.160883649510613 25.603266398098512 33.44051848357476 20.79533146881612 37 20.249708614016566 26.143025594678974 32.425689481088945 21.181576310215515 38 20.612839293016837 25.404128998967618 33.319651464155456 20.66338024386009 39 21.83804122038238 24.919374699487516 33.09581104039834 20.14677303973177 40 19.87685561138851 25.858846236344768 31.910444158869577 22.353853993397145 41 20.883891622950888 25.443888384698347 31.82782332305995 21.84439666929081 42 18.36804177648416 27.355478794174626 32.23612308537373 22.04035634396749 43 19.215737604699402 27.028929776450866 31.640261920155133 22.1150706986946 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 232.0 1 322.0 2 412.0 3 764.0 4 1116.0 5 1116.0 6 2318.0 7 3520.0 8 4092.0 9 4664.0 10 7737.5 11 10811.0 12 10811.0 13 22504.5 14 34198.0 15 54419.0 16 74640.0 17 69259.5 18 63879.0 19 63879.0 20 70637.0 21 77395.0 22 61596.5 23 45798.0 24 50167.0 25 54536.0 26 54536.0 27 59547.0 28 64558.0 29 68009.5 30 71461.0 31 76832.5 32 82204.0 33 82204.0 34 89119.0 35 96034.0 36 104448.0 37 112862.0 38 116362.0 39 119862.0 40 119862.0 41 126421.5 42 132981.0 43 153877.5 44 174774.0 45 226491.0 46 278208.0 47 278208.0 48 280449.5 49 282691.0 50 254815.5 51 226940.0 52 211583.5 53 196227.0 54 196227.0 55 167400.0 56 138573.0 57 113132.5 58 87692.0 59 75356.5 60 63021.0 61 63021.0 62 55124.5 63 47228.0 64 40630.5 65 34033.0 66 28758.0 67 23483.0 68 23483.0 69 19532.5 70 15582.0 71 12815.0 72 10048.0 73 8074.0 74 6100.0 75 6100.0 76 4634.5 77 3169.0 78 2493.0 79 1817.0 80 1469.0 81 1121.0 82 1121.0 83 842.5 84 564.0 85 459.0 86 354.0 87 293.5 88 233.0 89 233.0 90 234.5 91 236.0 92 156.5 93 77.0 94 60.5 95 44.0 96 44.0 97 28.5 98 13.0 99 11.5 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2643401.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.70399992014715 #Duplication Level Percentage of deduplicated Percentage of total 1 74.31235176532022 30.24809960321541 2 13.36207211111018 10.877795642872584 3 5.132793180356474 6.267756396100854 4 2.359768933293406 3.8420813788936212 5 1.3101097924525844 2.6663354443686997 6 0.7356725279017704 1.7966888710180868 7 0.4793634558706367 1.36584070486359 8 0.3447461273233035 1.122603707123103 9 0.24736114342801713 0.9061729166107365 >10 1.4334153594715047 11.166854005823703 >50 0.15983030437855722 4.577196532502574 >100 0.1057138376052841 8.05397151457287 >500 0.008307389291400936 2.309485342252713 >1k 0.007000608953427677 5.966265451748217 >5k 7.467316216989521E-4 2.230762385829379 >10k+ 7.467316216989521E-4 6.6020901022038965 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 38283 1.4482479200091094 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 37730 1.4273279006855184 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28806 1.0897325074780557 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 20574 0.7783155109648516 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14950 0.5655592927444606 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 11619 0.4395473861135711 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 11320 0.4282362002586819 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 10486 0.3966859360346765 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9771 0.369637448120811 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 9029 0.3415675487752331 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 8897 0.33657398177575026 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 7403 0.2800558825543306 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6965 0.2634863193287738 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5834 0.22070052935593198 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5568 0.2106377352509135 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5247 0.1984942882294438 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4790 0.18120595399638573 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4664 0.17643936731506116 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4211 0.1593023532941086 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4107 0.15536802777936454 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3969 0.15014748046172335 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3899 0.1474993767498764 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3830 0.14488910309105582 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3809 0.14409467197750173 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3444 0.13028670262287106 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 3386 0.12809255954734072 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3376 0.12771425901707686 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 3306 0.1250661553052299 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3290 0.12446087445680773 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3002 0.11356581918520875 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 2770 0.10478924688308736 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 2734 0.10342736497413749 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 2730 0.10327604476203195 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 2709 0.10248161364847785 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 7.566010605277065E-5 0.0 5 0.0 0.0 0.0 7.566010605277065E-5 0.0 6 0.0 0.0 0.0 7.566010605277065E-5 0.0 7 0.0 0.0 0.0 1.1349015907915598E-4 0.0 8 0.0 0.0 0.0 1.1349015907915598E-4 0.0 9 0.0 0.0 0.0 2.2698031815831195E-4 0.0 10 0.0 0.0 0.0 3.4047047723746797E-4 0.0 11 0.0 0.0 0.0 6.431109014485506E-4 0.0 12 0.0 0.0 0.0 9.835813786860186E-4 0.0 13 0.0 0.0 0.0 0.0012105616968443305 0.0 14 0.0 0.0 0.0 0.0014375420150026423 0.0 15 0.0 0.0 0.0 0.0022698031815831196 0.0 16 3.783005302638533E-5 0.0 0.0 0.0035181949314538356 0.0 17 3.783005302638533E-5 0.0 0.0 0.005296207423693946 0.0 18 3.783005302638533E-5 0.0 0.0 0.006279788802379964 0.0 19 3.783005302638533E-5 0.0 0.0 0.0069607297568549005 0.0 20 3.783005302638533E-5 0.0 0.0 0.009117042779358864 0.0 21 3.783005302638533E-5 0.0 0.0 0.012824387975944625 0.0 22 3.783005302638533E-5 0.0 0.0 0.022357561338593727 0.0 23 3.783005302638533E-5 0.0 0.0 0.036808641594672925 0.0 24 3.783005302638533E-5 0.0 0.0 0.05511838725944342 0.0 25 3.783005302638533E-5 0.0 0.0 0.06151166622090254 0.0 26 3.783005302638533E-5 0.0 0.0 0.06998559809881286 0.0 27 3.783005302638533E-5 0.0 0.0 0.11352798913218237 0.0 28 3.783005302638533E-5 0.0 0.0 0.19058780714692927 0.0 29 3.783005302638533E-5 0.0 0.0 0.28633567135671056 0.0 30 3.783005302638533E-5 0.0 0.0 0.47541027638258443 0.0 31 3.783005302638533E-5 0.0 0.0 0.7145718716153925 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8725 0.0 28.879084 1 GTATTGG 1215 0.0 23.144033 1 ATTGGAC 1300 0.0 21.915384 3 GCGCTTA 55 5.145526E-4 20.181818 18 TTGGACC 2140 0.0 18.500002 4 TATTGGA 1605 0.0 18.211838 2 TGGACCC 2200 0.0 17.743183 5 GTATCAA 14325 0.0 17.602444 2 GGACCCT 2150 0.0 17.209301 6 CCGTTTA 110 7.8170524E-7 16.818182 27 ACGTTTA 170 8.54925E-11 16.32353 26 TCACGTT 170 8.54925E-11 16.32353 24 CGTCTGT 720 0.0 16.1875 34 TTACGCT 80 3.384647E-4 16.1875 4 TGCGACG 120 1.9377203E-6 15.416667 22 TATACCG 230 0.0 15.282609 5 ATCACGT 220 1.8189894E-12 15.136364 23 GACCCTC 2420 0.0 14.983471 7 CGGTTTA 125 2.9620842E-6 14.800001 15 TCGGGTA 100 1.09421766E-4 14.8 25 >>END_MODULE