##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088143_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3113624 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.30254680719316 31.0 31.0 33.0 30.0 34.0 2 31.471175389192787 31.0 31.0 34.0 30.0 34.0 3 31.549120253441007 31.0 31.0 34.0 30.0 34.0 4 35.314379321331025 37.0 35.0 37.0 33.0 37.0 5 35.19363320683551 37.0 35.0 37.0 33.0 37.0 6 35.22924637014617 37.0 35.0 37.0 32.0 37.0 7 35.069018288656565 37.0 35.0 37.0 32.0 37.0 8 35.12328495669355 37.0 35.0 37.0 32.0 37.0 9 36.562947549222386 39.0 35.0 39.0 32.0 39.0 10 36.4199749231121 38.0 35.0 39.0 32.0 39.0 11 36.52258943276388 38.0 35.0 39.0 32.0 39.0 12 36.40087563559376 38.0 35.0 39.0 32.0 39.0 13 36.4327632366657 38.0 35.0 39.0 32.0 39.0 14 37.325308386626006 39.0 36.0 41.0 32.0 41.0 15 37.34903443704185 39.0 36.0 41.0 32.0 41.0 16 37.194936511280744 39.0 36.0 40.0 31.0 41.0 17 37.278785428169876 39.0 36.0 40.0 32.0 41.0 18 37.2658429534202 39.0 36.0 40.0 32.0 41.0 19 37.32802419303037 39.0 36.0 40.0 31.0 41.0 20 37.24116014008114 39.0 36.0 40.0 31.0 41.0 21 37.15259453293012 39.0 36.0 40.0 31.0 41.0 22 37.0896797429619 39.0 36.0 40.0 31.0 41.0 23 36.867440641516126 39.0 35.0 40.0 31.0 41.0 24 36.73144059783712 39.0 35.0 40.0 30.0 41.0 25 36.62209309794632 38.0 35.0 40.0 30.0 41.0 26 36.667460810939275 39.0 35.0 40.0 30.0 41.0 27 36.541710238615835 39.0 35.0 40.0 30.0 41.0 28 36.4146862305789 38.0 35.0 40.0 30.0 41.0 29 36.30641464736911 38.0 35.0 40.0 30.0 41.0 30 36.12358557102592 38.0 35.0 40.0 30.0 41.0 31 35.93635230201206 38.0 35.0 40.0 29.0 41.0 32 35.79732909304399 38.0 34.0 40.0 29.0 41.0 33 35.574929407018956 38.0 34.0 40.0 27.0 41.0 34 35.421787280673584 38.0 34.0 40.0 27.0 41.0 35 35.19423379316192 38.0 34.0 40.0 26.0 41.0 36 35.09008056207172 38.0 34.0 40.0 25.0 41.0 37 34.919241051584905 38.0 33.0 40.0 25.0 41.0 38 34.75413858577657 38.0 33.0 40.0 24.0 41.0 39 34.6344471907976 38.0 33.0 40.0 24.0 41.0 40 34.39741246855754 38.0 33.0 40.0 23.0 41.0 41 34.23623115700547 38.0 33.0 40.0 22.0 41.0 42 34.00650303312153 38.0 33.0 40.0 21.0 41.0 43 33.659322384462605 37.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 9.0 13 7.0 14 12.0 15 27.0 16 48.0 17 147.0 18 310.0 19 742.0 20 1463.0 21 2971.0 22 5338.0 23 9126.0 24 14846.0 25 22518.0 26 32887.0 27 45570.0 28 61738.0 29 80368.0 30 100188.0 31 123588.0 32 149144.0 33 180649.0 34 216480.0 35 261377.0 36 327504.0 37 430545.0 38 543280.0 39 502740.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.11617973139981 23.569384100328104 14.451231105618403 21.86320506265368 2 18.200848914319774 23.26221791712808 35.577320832573236 22.95961233597891 3 20.380238590144476 25.95181691816353 32.22229145201862 21.445653039673385 4 13.498803966053705 15.913514284319493 34.61182210825713 35.975859641369674 5 10.984980845471387 41.519399901850704 33.943083686405295 13.552535566272613 6 31.795650341852454 36.234400813971114 15.096684763478185 16.87326408069825 7 24.75119025290144 35.60195450703104 20.68422519867524 18.96263004139228 8 28.491943792827907 33.9316500643623 19.686770143087283 17.889635999722508 9 25.44215358052225 13.645064400839665 23.423412717784807 37.489369300853284 10 16.507516642985795 28.421382928703014 32.8129536514364 22.258146776874792 11 31.644636603520524 21.71697674478357 24.575061086373946 22.063325565321954 12 19.737450636300334 27.955719765777754 31.62295768532103 20.68387191260088 13 31.32154043005835 20.882033283402237 28.78542816987536 19.010998116664055 14 20.652300984319236 22.57581519155813 28.573745577500688 28.198138246621944 15 23.23157837940612 28.855314578767377 26.986816648381435 20.926290393445065 16 21.70082193611046 28.528846129140835 26.911438246878877 22.858893687869827 17 19.208709850643494 27.06498922156304 28.086821016281995 25.639479911511476 18 20.328144952633973 26.42175163089699 32.43384557672988 20.81625783973916 19 19.77878510700072 24.564912140965 33.777842154351326 21.87846059768296 20 24.63984090564564 23.53720295064529 32.43773172354786 19.3852244201612 21 23.71602993810428 24.658243898428324 30.963790104392825 20.66193605907457 22 21.765055767812683 23.950515540733242 32.39803521555589 21.88639347589818 23 20.698645693892388 26.295885437676482 33.50504107111199 19.500427797319137 24 19.659599232277245 25.2543659735408 31.595979476006093 23.490055318175862 25 20.63974327022145 26.473684683828235 32.68233415466993 20.204237891280385 26 22.30111921028358 25.209434408265096 31.23822915034057 21.251217231110758 27 20.88049167144138 26.876013288695106 30.779246305912338 21.464248733951177 28 20.58536933168552 26.09512259669119 31.097075305174936 22.222432766448357 29 19.531645439526415 25.975776137388458 32.449358047085965 22.043220375999155 30 18.944837270010765 26.057192519071027 34.33805751754226 20.65991269337595 31 20.363088157079982 25.61783311022782 32.986898867686016 21.032179865006178 32 21.634050868056 25.77353591827401 30.915454146036904 21.676959067633085 33 22.649523513436435 25.747071579612697 30.539589879831347 21.063815027119524 34 20.680371168773107 28.66566419066657 30.591651400426002 20.062313240134326 35 19.32767090695601 29.352645020721834 30.857226177598836 20.462457894723318 36 20.189913746810788 25.555622644224226 33.23272174161042 21.021741867354567 37 20.35435235596848 25.878879402265653 32.326735662366424 21.44003257939944 38 20.727647268905944 25.148251683568727 33.260342289242374 20.863758758282952 39 21.83144143287693 24.79364881565661 32.9028167819878 20.472092969478652 40 20.05948695153943 25.566895681687964 31.866243322893194 22.507374043879416 41 20.93245684128848 25.275755839497638 31.68889371356336 22.10289360565052 42 18.53801229692474 27.020956929931167 32.08528068899778 22.35575008414632 43 19.362710462149572 26.616315907123017 31.56495453529392 22.45601909543349 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 394.0 1 473.0 2 552.0 3 1019.5 4 1487.0 5 1487.0 6 3018.0 7 4549.0 8 5279.5 9 6010.0 10 9842.5 11 13675.0 12 13675.0 13 27383.0 14 41091.0 15 64785.5 16 88480.0 17 82357.0 18 76234.0 19 76234.0 20 83362.0 21 90490.0 22 71503.5 23 52517.0 24 57456.5 25 62396.0 26 62396.0 27 67013.0 28 71630.0 29 75295.0 30 78960.0 31 85227.0 32 91494.0 33 91494.0 34 99201.0 35 106908.0 36 117126.0 37 127344.0 38 133568.0 39 139792.0 40 139792.0 41 146859.5 42 153927.0 43 178023.0 44 202119.0 45 261665.0 46 321211.0 47 321211.0 48 323219.0 49 325227.0 50 294913.5 51 264600.0 52 245941.5 53 227283.0 54 227283.0 55 197763.0 56 168243.0 57 140317.5 58 112392.0 59 99034.5 60 85677.0 61 85677.0 62 74601.0 63 63525.0 64 55177.5 65 46830.0 66 39670.0 67 32510.0 68 32510.0 69 27017.5 70 21525.0 71 17888.0 72 14251.0 73 11582.0 74 8913.0 75 8913.0 76 6910.5 77 4908.0 78 3817.0 79 2726.0 80 2163.0 81 1600.0 82 1600.0 83 1189.0 84 778.0 85 640.0 86 502.0 87 400.5 88 299.0 89 299.0 90 335.0 91 371.0 92 235.0 93 99.0 94 89.5 95 80.0 96 80.0 97 46.5 98 13.0 99 12.5 100 12.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3113624.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.68608653096532 #Duplication Level Percentage of deduplicated Percentage of total 1 73.79350359687203 30.761623763623085 2 13.589902674113407 11.33019717640977 3 5.363663383306106 6.707704077584056 4 2.4042812527871935 4.009003053938586 5 1.3169838684067734 2.74499517491451 6 0.8066919498887761 2.0176698256138 7 0.49992930421081255 1.4588067364288053 8 0.3436379117142395 1.1459935778432009 9 0.24998117254459687 0.9378663110825615 >10 1.3832380088666711 10.898711640956 >50 0.14125520188867033 4.136556653701538 >100 0.0913793078634221 7.1847620274132895 >500 0.007582746361503989 2.1022899261876478 >1k 0.0065768718441407276 5.717965401729417 >5k 6.963746658501948E-4 2.0815824768497126 >10k+ 6.963746658501948E-4 6.764272175724208 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 43994 1.4129515959537824 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 43942 1.4112815163295247 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 33598 1.0790641387656312 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 23668 0.7601431643640979 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17528 0.5629453010382757 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 13032 0.41854764737168004 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 12277 0.39429937590409114 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 11422 0.3668394128513912 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10254 0.32932685513729343 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 9929 0.3188888574856823 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 9348 0.3002289293761867 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 8303 0.2666667523117756 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 7870 0.2527601277482445 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6612 0.21235704760754673 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6494 0.2085672515371156 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 5422 0.17413791774472448 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5354 0.17195396746684893 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5204 0.16713643008918225 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4473 0.14365896460202002 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4443 0.14269545712648668 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4442 0.1426633402106356 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4350 0.13970858395233335 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4193 0.1346662281637089 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 4109 0.1319684072322156 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 4033 0.12952752162753112 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3943 0.12663699920093113 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3755 0.12059901902092224 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 3738 0.12005303145145335 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3290 0.10566465315015557 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 3236 0.10393033969419557 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 3202 0.10283836455525779 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 6.423383170222224E-5 0.0 3 0.0 0.0 0.0 6.423383170222224E-5 0.0 4 0.0 0.0 0.0 9.635074755333335E-5 0.0 5 0.0 0.0 0.0 9.635074755333335E-5 0.0 6 0.0 0.0 0.0 9.635074755333335E-5 0.0 7 0.0 0.0 0.0 1.2846766340444447E-4 0.0 8 0.0 0.0 0.0 1.2846766340444447E-4 0.0 9 3.211691585111112E-5 0.0 0.0 1.927014951066667E-4 0.0 10 3.211691585111112E-5 0.0 0.0 3.854029902133334E-4 0.0 11 3.211691585111112E-5 3.211691585111112E-5 0.0 6.423383170222224E-4 0.0 12 3.211691585111112E-5 3.211691585111112E-5 0.0 0.001124092054788889 0.0 13 3.211691585111112E-5 3.211691585111112E-5 0.0 0.0011883258864911113 0.0 14 6.423383170222224E-5 3.211691585111112E-5 0.0 0.0012846766340444448 0.0 15 6.423383170222224E-5 3.211691585111112E-5 0.0 0.0018948980352155558 0.0 16 9.635074755333335E-5 3.211691585111112E-5 0.0 0.0029547562583022227 0.0 17 9.635074755333335E-5 3.211691585111112E-5 0.0 0.005395641862986668 0.0 18 9.635074755333335E-5 3.211691585111112E-5 0.0 0.006070097095860001 0.0 19 9.635074755333335E-5 3.211691585111112E-5 0.0 0.00719418915064889 0.0 20 9.635074755333335E-5 3.211691585111112E-5 0.0 0.009602957839482224 0.0 21 9.635074755333335E-5 3.211691585111112E-5 0.0 0.013585455405020002 0.0 22 2.5693532680888894E-4 3.211691585111112E-5 0.0 0.023124179412800004 0.0 23 2.5693532680888894E-4 3.211691585111112E-5 0.0 0.03616364724835112 0.0 24 3.532860743622223E-4 3.211691585111112E-5 0.0 0.05360313255550445 0.0 25 3.532860743622223E-4 3.211691585111112E-5 0.0 0.06086155553785556 0.0 26 3.532860743622223E-4 3.211691585111112E-5 0.0 0.0696294735652089 0.0 27 3.532860743622223E-4 3.211691585111112E-5 0.0 0.11822236724794002 0.0 28 3.532860743622223E-4 3.211691585111112E-5 0.0 0.20374971415944892 0.0 29 3.532860743622223E-4 3.211691585111112E-5 0.0 0.30456471301608673 0.0 30 3.532860743622223E-4 3.211691585111112E-5 0.0 0.5018589270894623 0.0 31 5.138706536177779E-4 3.211691585111112E-5 0.0 0.7418365223289646 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10495 0.0 28.609337 1 GTATTGG 1455 0.0 22.378008 1 ATTGGAC 1515 0.0 21.247526 3 ACGTTTA 155 0.0 20.290323 26 TATTGGA 1720 0.0 19.252907 2 TTGGACC 2305 0.0 19.101952 4 GGACCCT 2375 0.0 18.538948 6 TAGACCG 60 9.24165E-4 18.5 5 TGGACCC 2400 0.0 18.5 5 GTATCAA 17210 0.0 17.46804 2 CGCGATA 85 2.7255364E-5 17.411764 14 CGTCTGT 865 0.0 17.109827 34 TAGGTCG 125 1.6602644E-7 16.28 21 GACCCTC 2705 0.0 16.277266 7 GACCGTC 170 1.4897523E-9 15.235294 22 CTAGTAC 390 0.0 15.179487 3 TAGTACT 490 0.0 15.10204 4 GTATTAG 415 0.0 14.710843 1 TTTTTAC 2080 0.0 14.408654 1 CGCGCTT 90 8.279615E-4 14.388888 17 >>END_MODULE