##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088141_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5219372 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.524209042773727 31.0 31.0 34.0 30.0 34.0 2 31.695594029320002 31.0 31.0 34.0 30.0 34.0 3 31.786057211480614 31.0 31.0 34.0 30.0 34.0 4 35.51837117568934 37.0 35.0 37.0 33.0 37.0 5 35.39615493971306 37.0 35.0 37.0 33.0 37.0 6 35.41107570029498 37.0 35.0 37.0 33.0 37.0 7 35.28207014177185 37.0 35.0 37.0 32.0 37.0 8 35.30298204458314 37.0 35.0 37.0 32.0 37.0 9 36.81808865127835 39.0 37.0 39.0 32.0 39.0 10 36.66846586141015 39.0 35.0 39.0 32.0 39.0 11 36.752824286140175 39.0 35.0 39.0 32.0 39.0 12 36.63562838594375 39.0 35.0 39.0 32.0 39.0 13 36.66234750081044 39.0 35.0 39.0 32.0 39.0 14 37.65142300644599 39.0 36.0 41.0 32.0 41.0 15 37.667081786850986 39.0 36.0 41.0 32.0 41.0 16 37.535625550353565 39.0 36.0 41.0 32.0 41.0 17 37.54524203294956 39.0 36.0 41.0 32.0 41.0 18 37.52342753112826 39.0 36.0 41.0 32.0 41.0 19 37.54831558279425 39.0 36.0 41.0 32.0 41.0 20 37.46347414976361 39.0 36.0 41.0 32.0 41.0 21 37.38083164028163 39.0 36.0 41.0 31.0 41.0 22 37.294408216160875 39.0 36.0 41.0 31.0 41.0 23 37.09415538880923 39.0 36.0 40.0 31.0 41.0 24 36.94055127705019 39.0 36.0 40.0 31.0 41.0 25 36.8470821777026 39.0 36.0 40.0 30.0 41.0 26 36.938108646021014 39.0 36.0 40.0 31.0 41.0 27 36.83210528009883 39.0 35.0 40.0 30.0 41.0 28 36.72534684249369 39.0 35.0 40.0 30.0 41.0 29 36.62204092752921 39.0 35.0 40.0 30.0 41.0 30 36.4526757242059 39.0 35.0 40.0 30.0 41.0 31 36.304622855010145 38.0 35.0 40.0 30.0 41.0 32 36.17042414298118 38.0 35.0 40.0 30.0 41.0 33 35.97898674399909 38.0 35.0 40.0 29.0 41.0 34 35.85567056726365 38.0 35.0 40.0 29.0 41.0 35 35.641374287941154 38.0 34.0 40.0 27.0 41.0 36 35.54023721627813 38.0 34.0 40.0 27.0 41.0 37 35.39926393443503 38.0 34.0 40.0 26.0 41.0 38 35.280166656065134 38.0 34.0 40.0 25.0 41.0 39 35.19570496220618 38.0 34.0 40.0 25.0 41.0 40 34.99154093634253 38.0 34.0 40.0 24.0 41.0 41 34.85924954189891 38.0 33.0 40.0 24.0 41.0 42 34.659815395415386 38.0 33.0 40.0 23.0 41.0 43 34.33457971572059 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 6.0 12 13.0 13 19.0 14 27.0 15 42.0 16 85.0 17 230.0 18 457.0 19 964.0 20 2173.0 21 4219.0 22 7401.0 23 12680.0 24 20566.0 25 31509.0 26 46448.0 27 64746.0 28 88649.0 29 117288.0 30 148760.0 31 185114.0 32 227857.0 33 279572.0 34 343528.0 35 419618.0 36 530813.0 37 709312.0 38 945374.0 39 1031901.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.649583896300165 22.52694385454802 13.613975014618617 23.209497234533195 2 18.071062955466672 22.54194565936285 35.97109000852976 23.415901376640715 3 19.676447664584934 25.490576260898823 31.963079083077428 22.869896991438818 4 13.283398845684882 15.595171219832576 35.35957965824241 35.76185027624013 5 11.656670572628277 40.314869298452 34.43301224745046 13.595447881469264 6 32.189792181894674 36.44861872271223 15.35360959134547 16.007979504047615 7 26.019452148649304 34.323458837576624 20.968633774331472 18.6884552394426 8 28.087996027108243 33.828284322328436 19.644259884139316 18.439459766424008 9 25.757447447700603 13.9197780882451 22.614253209006755 37.70852125504754 10 16.357849181855595 27.878411425742406 33.28881329018127 22.474926102220728 11 32.65367940817401 21.78396174865482 24.292558568348834 21.269800274822334 12 20.467941353864028 27.07821937198575 31.253664233934657 21.200175040215566 13 31.056705672636475 20.4887101360087 27.867797121952602 20.586787069402217 14 21.156185073606558 22.16837581226247 27.55467516015337 29.120763953977608 15 23.50160134207717 28.96413591520206 25.506555194762893 22.027707547957878 16 22.716372774349097 28.23910616066454 25.962299678965206 23.082221386021153 17 20.495032735739088 27.050725642855117 27.151925557327587 25.302316064078205 18 21.585432117120604 26.2841966428145 30.64587080591305 21.484500434151848 19 20.965702387183747 24.79131589011092 31.575771951108294 22.667209771597044 20 24.903494136842514 24.02605141001638 30.357138751558615 20.713315701582488 21 24.18289020211627 24.933057080430366 29.422754308372735 21.46129840908063 22 22.794619735860945 24.557073149796565 30.425231234715593 22.223075879626897 23 21.974731825974466 26.073481637254442 31.216705764601567 20.735080772169525 24 20.803748037120172 25.358376448354324 29.702519766745883 24.13535574777962 25 22.012016004990638 26.225511421680615 30.490545605869823 21.27192696745892 26 23.12647958413388 25.423997369798514 29.425110913726787 22.024412132340824 27 21.928557688549503 26.65012189205904 29.13691532237978 22.28440509701167 28 21.898669035278573 26.052157232709224 29.31831645646258 22.730857275549628 29 20.794015065414 25.970078392572898 30.366526854188585 22.869379687824512 30 20.36676059878468 26.376123411015733 31.878432884262704 21.378683105936883 31 21.825978297772224 25.736851100094032 30.72570799705405 21.711462605079692 32 22.726508093310844 25.68839699488751 29.081544676256073 22.503550235545582 33 23.340394208345373 25.76294619352673 28.799441771921984 22.097217826205913 34 21.996631012313358 27.99112613548143 28.828429933716166 21.183812918489046 35 20.793440283620328 28.849773497654507 29.19307150362151 21.16371471510366 36 21.600568037687292 25.71935857417329 30.872124079295364 21.80794930884405 37 21.75752178614592 25.88112133030564 30.24777693561601 22.113579947932433 38 21.733744979281035 25.370849213276998 31.171470437439602 21.723935370002366 39 22.765382501956175 24.863968308831026 30.973917934954624 21.396731254258174 40 20.980857467143558 25.611318756356127 30.403925989563497 23.003897786936818 41 21.82185902825091 25.208530834744103 30.442302253987645 22.527307883017343 42 19.896090947340024 26.805159701205433 30.6188752210036 22.679874130450944 43 20.333710645648555 26.436360542992528 30.25758654489467 22.972342266464242 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 333.0 1 507.0 2 681.0 3 1416.5 4 2152.0 5 2152.0 6 4001.0 7 5850.0 8 6563.5 9 7277.0 10 11897.0 11 16517.0 12 16517.0 13 31808.0 14 47099.0 15 75474.5 16 103850.0 17 99754.5 18 95659.0 19 95659.0 20 105817.0 21 115975.0 22 96315.5 23 76656.0 24 86323.5 25 95991.0 26 95991.0 27 106094.0 28 116197.0 29 124034.0 30 131871.0 31 142226.5 32 152582.0 33 152582.0 34 168351.5 35 184121.0 36 203173.0 37 222225.0 38 234808.5 39 247392.0 40 247392.0 41 262614.5 42 277837.0 43 310751.5 44 343666.0 45 422445.5 46 501225.0 47 501225.0 48 508671.5 49 516118.0 50 478555.5 51 440993.0 52 419953.0 53 398913.0 54 398913.0 55 351701.0 56 304489.0 57 261087.0 58 217685.0 59 194213.0 60 170741.0 61 170741.0 62 151455.5 63 132170.0 64 115974.0 65 99778.0 66 84458.5 67 69139.0 68 69139.0 69 58731.5 70 48324.0 71 40448.5 72 32573.0 73 25951.0 74 19329.0 75 19329.0 76 14755.5 77 10182.0 78 7876.0 79 5570.0 80 4485.5 81 3401.0 82 3401.0 83 2564.0 84 1727.0 85 1380.5 86 1034.0 87 879.0 88 724.0 89 724.0 90 783.0 91 842.0 92 539.5 93 237.0 94 194.5 95 152.0 96 152.0 97 100.5 98 49.0 99 47.5 100 46.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 5219372.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.365254579469365 #Duplication Level Percentage of deduplicated Percentage of total 1 70.24698929813992 26.24796638566258 2 14.053955538358126 10.502592530785895 3 5.977316205944741 6.700318252113395 4 3.1044870090844414 4.6399978973238225 5 1.7706297099267676 3.3080014938692837 6 1.0450045103312262 2.3428115739131994 7 0.7483138363491997 1.9572655900369056 8 0.5221512656735484 1.5608251976707423 9 0.39189283535578084 1.3178858004844942 >10 1.8274777947208931 12.477646807797171 >50 0.16270949564049872 4.221347280715708 >100 0.12943739048197253 9.415260885784793 >500 0.011565183360831014 2.907065337289612 >1k 0.006784906467708201 4.968315034812317 >5k 5.654088723089834E-4 1.3389684402534545 >10k+ 7.196112920296153E-4 6.093731491486841 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 51551 0.9876858748523769 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 51496 0.9866321082306454 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 41559 0.7962452187734463 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 33055 0.6333137396606335 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19444 0.37253523987177 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 17458 0.33448468513070156 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 16815 0.32216519535300414 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 15411 0.29526540740916724 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 14012 0.26846141643094223 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 12767 0.24460797199356552 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 12508 0.23964568917486628 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 10660 0.20423913068468774 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 10366 0.1986062691067048 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 10180 0.19504262198594008 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 8655 0.16582454747429384 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 8168 0.15649392302368945 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 6724 0.12882775935495688 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 6548 0.12545570616541607 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 6466 0.12388463592938001 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 6125 0.11735128287464469 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6089 0.11666154472223861 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5679 0.10880619354205832 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 5230 0.10020362603010477 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 1.915939312239097E-5 0.0 0.0 0.0 0.0 3 1.915939312239097E-5 0.0 0.0 1.915939312239097E-5 0.0 4 1.915939312239097E-5 0.0 0.0 1.915939312239097E-5 0.0 5 1.915939312239097E-5 0.0 0.0 1.915939312239097E-5 0.0 6 5.747817936717291E-5 0.0 0.0 1.915939312239097E-5 0.0 7 5.747817936717291E-5 0.0 0.0 1.915939312239097E-5 0.0 8 7.663757248956388E-5 0.0 0.0 1.915939312239097E-5 0.0 9 7.663757248956388E-5 0.0 0.0 1.915939312239097E-5 0.0 10 7.663757248956388E-5 1.915939312239097E-5 0.0 1.1495635873434582E-4 0.0 11 7.663757248956388E-5 1.915939312239097E-5 0.0 1.915939312239097E-4 0.0 12 7.663757248956388E-5 1.915939312239097E-5 0.0 3.0655028995825554E-4 0.0 13 7.663757248956388E-5 1.915939312239097E-5 0.0 3.4486907620303746E-4 0.0 14 9.579696561195485E-5 1.915939312239097E-5 0.0 4.406660418149923E-4 0.0 15 9.579696561195485E-5 1.915939312239097E-5 0.0 7.472163317732479E-4 0.0 16 9.579696561195485E-5 1.915939312239097E-5 0.0 0.001149563587343458 0.0 17 9.579696561195485E-5 1.915939312239097E-5 0.0 0.001877620525994315 0.0 18 9.579696561195485E-5 1.915939312239097E-5 0.0 0.002069214457218225 0.0 19 9.579696561195485E-5 1.915939312239097E-5 0.0 0.002471561712788435 0.0 20 9.579696561195485E-5 1.915939312239097E-5 0.0 0.003276256223928856 0.0 21 9.579696561195485E-5 1.915939312239097E-5 0.0 0.004694051314985788 0.0 22 9.579696561195485E-5 1.915939312239097E-5 0.0 0.00810442329077138 0.0 23 9.579696561195485E-5 1.915939312239097E-5 0.0 0.0142162696968141 0.0 24 1.1495635873434582E-4 1.915939312239097E-5 0.0 0.023240343857460245 0.0 25 1.1495635873434582E-4 1.915939312239097E-5 0.0 0.02732129459252952 0.0 26 1.1495635873434582E-4 1.915939312239097E-5 0.0 0.032915837384267684 0.0 27 1.1495635873434582E-4 1.915939312239097E-5 0.0 0.06450967664309039 0.0 28 1.7243453810151873E-4 1.915939312239097E-5 0.0 0.12438278015056217 0.0 29 1.7243453810151873E-4 1.915939312239097E-5 0.0 0.20268721984177407 0.0 30 2.6823150371347356E-4 1.915939312239097E-5 0.0 0.3502528656704293 0.0 31 3.4486907620303746E-4 1.915939312239097E-5 0.0 0.556695326564192 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12505 0.0 29.085165 1 ATTGGAC 2110 0.0 20.954975 3 GTATTGG 2005 0.0 20.852867 1 GTATCAA 20565 0.0 17.667883 2 TTGGACC 3330 0.0 17.61111 4 TATTGGA 2670 0.0 16.837078 2 TGGACCC 3305 0.0 16.792738 5 GGACCCT 3210 0.0 16.771029 6 ACGTTTA 350 0.0 15.857143 26 TATACTG 645 0.0 14.914728 5 GACCCTC 3590 0.0 14.892758 7 TCACGTT 420 0.0 13.654761 24 TATACCG 340 0.0 13.602941 5 CGTCTGT 1305 0.0 13.325671 34 ACGGACC 585 0.0 13.282051 8 CGACGAG 295 0.0 13.169492 24 CTGTGCG 380 0.0 13.144737 9 TACGTTA 240 8.185452E-11 13.104167 19 ACCCTCG 3985 0.0 13.091594 8 ATAACGC 610 0.0 12.737704 3 >>END_MODULE