##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088139_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 909876 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.57441013940361 31.0 31.0 34.0 30.0 34.0 2 31.750156065222075 31.0 31.0 34.0 30.0 34.0 3 31.825803735893683 31.0 31.0 34.0 30.0 34.0 4 35.54669207672254 37.0 35.0 37.0 33.0 37.0 5 35.43999841736676 37.0 35.0 37.0 33.0 37.0 6 35.47304687671727 37.0 35.0 37.0 33.0 37.0 7 35.33405870690072 37.0 35.0 37.0 33.0 37.0 8 35.37326185106542 37.0 35.0 37.0 33.0 37.0 9 36.88647024429702 39.0 37.0 39.0 33.0 39.0 10 36.74829757021836 39.0 35.0 39.0 32.0 39.0 11 36.828362326295014 39.0 37.0 39.0 32.0 39.0 12 36.71294440121511 39.0 35.0 39.0 32.0 39.0 13 36.739426031679045 39.0 35.0 39.0 32.0 39.0 14 37.70458062417296 39.0 37.0 41.0 32.0 41.0 15 37.72335900716141 39.0 37.0 41.0 32.0 41.0 16 37.60241285625734 39.0 36.0 41.0 32.0 41.0 17 37.651839371518754 39.0 37.0 41.0 32.0 41.0 18 37.65407813811992 39.0 37.0 41.0 32.0 41.0 19 37.693079056926436 39.0 37.0 41.0 32.0 41.0 20 37.622500208819666 39.0 37.0 41.0 32.0 41.0 21 37.55648352083141 39.0 36.0 41.0 32.0 41.0 22 37.46755052336802 39.0 36.0 41.0 32.0 41.0 23 37.27504846814291 39.0 36.0 41.0 31.0 41.0 24 37.13623834456563 39.0 36.0 41.0 31.0 41.0 25 37.03564221937934 39.0 36.0 40.0 31.0 41.0 26 37.09851122570548 39.0 36.0 41.0 31.0 41.0 27 36.98734333029995 39.0 36.0 41.0 31.0 41.0 28 36.88503158672171 39.0 35.0 41.0 31.0 41.0 29 36.76786177457148 39.0 35.0 40.0 30.0 41.0 30 36.575146503479594 39.0 35.0 40.0 30.0 41.0 31 36.39161819852375 38.0 35.0 40.0 30.0 41.0 32 36.211234278077455 38.0 35.0 40.0 30.0 41.0 33 36.00001868386462 38.0 35.0 40.0 30.0 41.0 34 35.86472442398745 38.0 35.0 40.0 29.0 41.0 35 35.665469800280476 38.0 35.0 40.0 28.0 41.0 36 35.53067231139188 38.0 34.0 40.0 27.0 41.0 37 35.37059005842554 38.0 34.0 40.0 26.0 41.0 38 35.20945601378649 38.0 34.0 40.0 25.0 41.0 39 35.07602354606562 38.0 34.0 40.0 25.0 41.0 40 34.8519941178798 38.0 34.0 40.0 24.0 41.0 41 34.67607893822895 38.0 33.0 40.0 23.0 41.0 42 34.45785359763308 38.0 33.0 40.0 22.0 41.0 43 34.08526436569379 38.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 2.0 15 7.0 16 10.0 17 29.0 18 59.0 19 160.0 20 331.0 21 607.0 22 1234.0 23 2051.0 24 3359.0 25 5056.0 26 7695.0 27 10746.0 28 14969.0 29 19513.0 30 25321.0 31 31579.0 32 38373.0 33 48618.0 34 59643.0 35 73776.0 36 94592.0 37 128474.0 38 163416.0 39 180255.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.65213281809829 22.775740870184507 14.499008656124571 22.07311765559263 2 18.206766636332862 23.52968975992333 35.47186649609397 22.791677107649832 3 19.7644514197539 25.771973323837532 32.40287687553029 22.060698380878275 4 13.58031204252008 16.39586053484211 34.64450100892869 35.37932641370912 5 11.418479001534275 41.0321846053748 33.81592656581776 13.733409827273166 6 31.365812484338523 36.497830473603 15.485956328115039 16.65040071394344 7 24.814700025058357 35.41020974286606 21.110019387257164 18.665070844818416 8 28.19296255753531 33.910225129578095 19.700926280064536 18.195886032822056 9 25.787579846044956 13.9313488871011 23.209426339413284 37.07164492744066 10 16.86966136044912 29.167161239553526 32.34748471220254 21.615692687794823 11 31.925559087172317 22.90509915636856 23.544087326185107 21.625254430274016 12 20.10482747099605 28.973178762820428 30.841235509014414 20.08075825716911 13 30.900364445265073 21.69614321072322 27.815438587236063 19.588053756775647 14 20.66853065692468 23.58211448592995 28.894486721267516 26.854868135877858 15 23.631681679701412 29.662283651838273 26.138177070282104 20.567857598178215 16 21.66624902733999 28.50839015426278 27.147875095067896 22.677485723329333 17 19.58025049567194 28.411673678611148 28.070858007025134 23.937217818691778 18 20.162417736043153 27.138862878018543 31.79697013659004 20.90174924934826 19 20.05427113145088 26.25841323433083 33.301021238058816 20.386294396159478 20 23.489684308631066 25.030773424070972 32.08722946863089 19.39231279866707 21 22.873666301781782 25.954745481801915 30.864315577067647 20.307272639348657 22 21.84319621574808 25.620084495030092 31.651016182424858 20.88570310679697 23 20.73865010177211 27.24206375374227 32.2085646835393 19.810721460946326 24 19.44385828398595 27.002470666332556 31.24161973719496 22.312051312486535 25 20.66314530771226 27.500010990508596 31.971389508020877 19.865454193758268 26 21.55634394137223 26.568455481845877 30.949052398348787 20.926148178433106 27 20.575441049109987 27.73169091172863 30.724186592458754 20.96868144670263 28 20.051083883957816 27.66332994825669 30.82046344776651 21.465122720018993 29 19.2913100246627 27.378675775600193 31.983149352219424 21.346864847517683 30 19.0666640289446 27.66212099231104 33.268049712268486 20.00316526647587 31 20.17868368876638 27.365157450026157 32.004141223639266 20.452017637568197 32 20.925159032659398 27.701137297829593 30.905639889391523 20.46806378011949 33 21.488202788072222 27.45374094931617 30.367654493579344 20.690401769032263 34 20.177035112476865 28.92833748774558 30.743090267245204 20.151537132532347 35 19.267130905749795 29.384883214855652 30.951580215326047 20.39640566406851 36 19.620146041878233 26.901248082156247 32.63554594252403 20.84305993344148 37 19.708180015738407 26.97785192707578 32.07074370573573 21.24322435145009 38 19.973710703436513 26.788265653781394 32.55949162303435 20.678532019747745 39 20.70040313185533 26.328972299522135 32.68972914990614 20.280895418716398 40 19.409348086992072 26.605603400902982 32.260989409545914 21.72405910255903 41 19.689606056209858 26.28797770245616 32.24725127379995 21.77516496753404 42 18.041799102295258 27.465720603686655 32.22614949729414 22.26633079672395 43 18.629241786792925 26.997524937464007 32.14141267601299 22.231820599730074 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 113.0 1 177.0 2 241.0 3 443.0 4 645.0 5 645.0 6 1195.0 7 1745.0 8 1951.0 9 2157.0 10 3489.0 11 4821.0 12 4821.0 13 8770.0 14 12719.0 15 20197.0 16 27675.0 17 25264.5 18 22854.0 19 22854.0 20 24531.5 21 26209.0 22 21023.5 23 15838.0 24 17699.0 25 19560.0 26 19560.0 27 21628.5 28 23697.0 29 24680.0 30 25663.0 31 27822.5 32 29982.0 33 29982.0 34 32693.5 35 35405.0 36 38382.0 37 41359.0 38 43531.5 39 45704.0 40 45704.0 41 47663.5 42 49623.0 43 55287.5 44 60952.0 45 72879.0 46 84806.0 47 84806.0 48 85764.0 49 86722.0 50 77979.0 51 69236.0 52 62882.5 53 56529.0 54 56529.0 55 51013.5 56 45498.0 57 39651.0 58 33804.0 59 30045.0 60 26286.0 61 26286.0 62 22886.0 63 19486.0 64 16686.0 65 13886.0 66 11712.0 67 9538.0 68 9538.0 69 8027.0 70 6516.0 71 5449.0 72 4382.0 73 3532.5 74 2683.0 75 2683.0 76 2109.0 77 1535.0 78 1209.0 79 883.0 80 715.0 81 547.0 82 547.0 83 397.5 84 248.0 85 193.5 86 139.0 87 113.5 88 88.0 89 88.0 90 77.5 91 67.0 92 42.0 93 17.0 94 15.0 95 13.0 96 13.0 97 8.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 909876.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.52588322991281 #Duplication Level Percentage of deduplicated Percentage of total 1 80.01904865935904 42.03071206050204 2 11.434622004276449 12.012272403496324 3 3.6151924762717136 5.69673533586922 4 1.4957264749507824 3.1425741666861557 5 0.8125676155078637 2.134041584428737 6 0.5087330597000072 1.6032991973399302 7 0.34203151110614977 1.2575855049318574 8 0.23755609434941644 0.9982274937881277 9 0.20123321877096556 0.951295729602891 >10 1.1699562640292946 11.697684290247693 >50 0.09564656322994335 3.4246348041595582 >100 0.057175800937683756 5.460210166546188 >500 0.006516359656582487 2.2443469954161333 >1k 0.0033632824033974127 3.531200157790072 >5k 2.102051502123383E-4 1.0335677780336707 >10k+ 4.204103004246766E-4 2.781612331161443 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 13188 1.4494282737427957 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 12005 1.3194105570429377 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9361 1.0288215097441848 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4839 0.5318307109979822 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4017 0.44148873033248487 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 2396 0.26333258597874876 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 2389 0.2625632503769744 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 2071 0.22761343303922735 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 1887 0.20739089722115978 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 1717 0.1887070326066409 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 1681 0.1847504495118016 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1631 0.1792551952134137 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1606 0.17650756806421974 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1406 0.15452655087066808 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1375 0.1511194932056676 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1346 0.1479322457126026 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1237 0.13595259134211696 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1209 0.13287524893501973 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1175 0.12913847601211595 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 998 0.10968527579582274 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 943 0.10364049606759604 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 2.198101719355165E-4 0.0 10 0.0 0.0 0.0 3.2971525790327476E-4 0.0 11 0.0 0.0 0.0 3.2971525790327476E-4 0.0 12 0.0 0.0 0.0 5.495254298387912E-4 0.0 13 1.0990508596775825E-4 0.0 0.0 5.495254298387912E-4 0.0 14 1.0990508596775825E-4 0.0 0.0 5.495254298387912E-4 0.0 15 1.0990508596775825E-4 0.0 0.0 7.693356017743077E-4 0.0 16 1.0990508596775825E-4 0.0 0.0 0.001758481375484132 0.0 17 1.0990508596775825E-4 0.0 0.0 0.0025278169772584395 0.0 18 1.0990508596775825E-4 0.0 0.0 0.003516962750968264 0.0 19 1.0990508596775825E-4 0.0 0.0 0.004176393266774814 0.0 20 1.0990508596775825E-4 0.0 0.0 0.004945728868549121 0.0 21 1.0990508596775825E-4 0.0 0.0 0.006814115330001011 0.0 22 1.0990508596775825E-4 0.0 0.0 0.013518325574034264 0.0 23 1.0990508596775825E-4 0.0 0.0 0.025278169772584395 0.0 24 1.0990508596775825E-4 0.0 0.0 0.04066488180807055 0.0 25 1.0990508596775825E-4 0.0 0.0 0.048907763255652416 0.0 26 1.0990508596775825E-4 0.0 0.0 0.06319542443146099 0.0 27 1.0990508596775825E-4 0.0 0.0 0.12825923532437386 0.0 28 1.0990508596775825E-4 0.0 0.0 0.23838413146406764 0.0 29 1.0990508596775825E-4 0.0 0.0 0.37301786177457147 0.0 30 1.0990508596775825E-4 0.0 0.0 0.6184359187405757 0.0 31 1.0990508596775825E-4 0.0 0.0 0.936501237531268 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTAC 50 9.08837E-6 25.900002 28 GGTATCA 3640 0.0 23.684065 1 CCGTTTA 55 1.9020943E-5 23.545454 27 TTACGGC 65 2.6818252E-6 22.76923 18 ACCGTTA 65 2.6818252E-6 22.76923 8 GTATACG 55 5.141963E-4 20.181818 1 GACCGTT 75 9.262292E-6 19.733334 7 ATCACGT 85 1.2447235E-6 19.588236 23 AACCGTG 60 9.234802E-4 18.5 7 AATTACG 50 0.0070337835 18.5 16 CCGCCGT 70 1.2188429E-4 18.5 24 TTCTGCG 50 0.0070337835 18.5 2 CTAGACA 85 2.722105E-5 17.411764 4 TAAACGT 85 2.722105E-5 17.411764 4 AACGTGA 75 2.06667E-4 17.266666 6 CGCCGTT 75 2.06667E-4 17.266666 25 TGTTACG 65 0.0015795915 17.076923 16 ACGTTTA 90 4.444317E-5 16.444445 26 GCTGCGT 70 0.0025919368 15.857143 8 ACGGCTC 70 0.0025919368 15.857143 5 >>END_MODULE