##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088138_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3482448 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.576942139552408 31.0 31.0 34.0 30.0 34.0 2 31.756647622591924 31.0 31.0 34.0 30.0 34.0 3 31.849691079378644 31.0 31.0 34.0 30.0 34.0 4 35.56438459382595 37.0 35.0 37.0 33.0 37.0 5 35.44952200291289 37.0 35.0 37.0 33.0 37.0 6 35.46631162906094 37.0 35.0 37.0 33.0 37.0 7 35.342702317450254 37.0 35.0 37.0 33.0 37.0 8 35.383794388315344 37.0 35.0 37.0 33.0 37.0 9 36.89368656760991 39.0 37.0 39.0 33.0 39.0 10 36.74829143177443 39.0 35.0 39.0 32.0 39.0 11 36.8106986809279 39.0 37.0 39.0 32.0 39.0 12 36.70296842910504 39.0 35.0 39.0 32.0 39.0 13 36.72136669377404 39.0 35.0 39.0 32.0 39.0 14 37.735603230830726 40.0 37.0 41.0 32.0 41.0 15 37.74585492733847 40.0 37.0 41.0 32.0 41.0 16 37.624216068696505 39.0 36.0 41.0 32.0 41.0 17 37.63160426228906 39.0 36.0 41.0 32.0 41.0 18 37.61148852761046 39.0 36.0 41.0 32.0 41.0 19 37.64200614050806 39.0 37.0 41.0 32.0 41.0 20 37.55504346367842 39.0 36.0 41.0 32.0 41.0 21 37.47325157475431 39.0 36.0 41.0 32.0 41.0 22 37.37014221030723 39.0 36.0 41.0 31.0 41.0 23 37.169199942109685 39.0 36.0 41.0 31.0 41.0 24 37.02397566309676 39.0 36.0 40.0 31.0 41.0 25 36.92024748108227 39.0 36.0 40.0 31.0 41.0 26 37.05367345040041 39.0 36.0 41.0 31.0 41.0 27 36.96039510137696 39.0 36.0 41.0 31.0 41.0 28 36.87456237681079 39.0 35.0 41.0 30.0 41.0 29 36.80300150928313 39.0 35.0 40.0 30.0 41.0 30 36.61916904430446 39.0 35.0 40.0 30.0 41.0 31 36.452803889677604 39.0 35.0 40.0 30.0 41.0 32 36.306143551892234 38.0 35.0 40.0 30.0 41.0 33 36.10784827224987 38.0 35.0 40.0 30.0 41.0 34 35.995016723867806 38.0 35.0 40.0 29.0 41.0 35 35.79254507174264 38.0 35.0 40.0 28.0 41.0 36 35.70883097177617 38.0 35.0 40.0 27.0 41.0 37 35.555914402741976 38.0 34.0 40.0 27.0 41.0 38 35.45563063683937 38.0 34.0 40.0 26.0 41.0 39 35.3607804050484 38.0 34.0 40.0 25.0 41.0 40 35.18032889507611 38.0 34.0 40.0 25.0 41.0 41 35.03750522620869 38.0 34.0 40.0 24.0 41.0 42 34.84686519367985 38.0 33.0 40.0 24.0 41.0 43 34.5313003955838 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 9.0 13 13.0 14 13.0 15 20.0 16 75.0 17 135.0 18 268.0 19 673.0 20 1351.0 21 2598.0 22 4683.0 23 8088.0 24 12998.0 25 20195.0 26 29379.0 27 41336.0 28 55916.0 29 74186.0 30 94287.0 31 118666.0 32 145717.0 33 179360.0 34 221267.0 35 272527.0 36 351100.0 37 475761.0 38 651081.0 39 720743.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.32508166668964 22.71359112899891 13.766407998051944 23.194919206259502 2 18.22683353778721 22.724589139593757 35.653080821307306 23.395496501311722 3 19.573271445833505 25.560697532310606 31.769519602302747 23.096511419553142 4 13.512132844481814 15.97987967085223 35.31989565960497 35.188091825060994 5 11.69855228276201 40.32088921356471 34.53317895916895 13.447379544504326 6 32.16091094540393 36.7196294101161 15.273480034734188 15.84597960974579 7 25.851498715845867 34.3681800848139 21.191874221811783 18.58844697752845 8 27.724146921935372 34.36022591004948 19.730086421965236 18.185540746049906 9 25.663785934492054 14.027862009712708 22.453113442038475 37.85523861375676 10 16.366705260207763 28.11189140512651 33.323656232627165 22.197747102038566 11 32.75221912861298 22.080501991702388 23.940343114958214 21.226935764726424 12 20.137788130648325 27.476648610402798 31.259677100706167 21.125886158242707 13 30.786446775371807 21.00737756888258 27.564690126026292 20.641485529719326 14 20.99724102125861 22.285846048526782 27.75403968702476 28.962873243189847 15 23.572498426394304 29.106019673517018 25.446754696696118 21.874727203392556 16 22.550803342935772 28.278699351720398 26.032492086026842 23.138005219316987 17 20.380002802626198 27.38059548915016 27.30694040514029 24.932461303083347 18 21.233683891331616 26.71540249847234 30.519450685265078 21.53146292493097 19 20.978173974169895 25.216772798904678 31.572158435675135 22.232894791250292 20 24.430544260818827 24.552584848359547 30.498000257290276 20.518870633531357 21 23.823471305242748 25.268431861724856 29.427201784491828 21.480895048540567 22 22.550832058368137 24.853292856059873 30.44774825065586 22.14812683491613 23 21.76296674063762 26.318440361492833 31.015251340436382 20.903341557433162 24 20.729268606451555 25.863903782626473 29.79249079957547 23.6143368113465 25 21.769284135757374 26.45773892388343 30.59617832053774 21.17679861982146 26 22.77334794374532 25.67383633581894 29.648339329115608 21.90447639132013 27 21.712140425355955 26.835777590936033 29.28864982334266 22.16343216036535 28 21.5566463591129 26.261153073929606 29.568740150606697 22.613460416350797 29 20.755945243116336 26.219343404409774 30.437468125870076 22.587243226603814 30 20.302873151300467 26.47697826356632 31.750509986078757 21.46963859905446 31 21.557507822083778 25.892131052638835 30.888128121367497 21.662233003909893 32 22.23892503204642 25.97572167624613 29.46904016944402 22.31631312226342 33 22.937485355129496 25.874901793221323 29.21312823622923 21.974484615419957 34 21.668722691623824 27.909792192159077 29.26564876202028 21.15583635419682 35 20.775471737122853 28.42198935920938 29.507748572268707 21.29479033139906 36 21.386564853229682 25.69787115270637 31.118770474103275 21.796793519960673 37 21.372896307425123 25.777355469485837 30.610593467583726 22.23915475550532 38 21.435409803678333 25.48207467850202 31.39817163099061 21.684343886829037 39 22.280390116377905 25.05272153381759 31.201643211901516 21.46524513790299 40 20.916923956940636 25.61970774581559 30.709489416640253 22.75387888060353 41 21.48276155164413 25.356444661915983 30.5379721391389 22.622821647300977 42 19.66455780531396 26.670233123366096 30.896656604779167 22.76855246654078 43 20.263676586125623 26.25383063867716 30.55818780352212 22.924304971675095 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 241.0 1 406.5 2 572.0 3 1016.5 4 1461.0 5 1461.0 6 2707.5 7 3954.0 8 4442.0 9 4930.0 10 7978.5 11 11027.0 12 11027.0 13 21665.5 14 32304.0 15 51058.5 16 69813.0 17 66653.0 18 63493.0 19 63493.0 20 69830.5 21 76168.0 22 63014.0 23 49860.0 24 56206.0 25 62552.0 26 62552.0 27 70500.0 28 78448.0 29 85290.0 30 92132.0 31 100948.5 32 109765.0 33 109765.0 34 122795.0 35 135825.0 36 147550.5 37 159276.0 38 168419.5 39 177563.0 40 177563.0 41 186822.0 42 196081.0 43 216414.0 44 236747.0 45 282755.0 46 328763.0 47 328763.0 48 330411.0 49 332059.0 50 306890.0 51 281721.0 52 264458.0 53 247195.0 54 247195.0 55 221890.5 56 196586.0 57 168801.5 58 141017.0 59 127361.5 60 113706.0 61 113706.0 62 100682.5 63 87659.0 64 75413.5 65 63168.0 66 53903.0 67 44638.0 68 44638.0 69 37814.0 70 30990.0 71 26322.5 72 21655.0 73 17500.5 74 13346.0 75 13346.0 76 10435.0 77 7524.0 78 5847.0 79 4170.0 80 3326.0 81 2482.0 82 2482.0 83 1908.0 84 1334.0 85 1077.0 86 820.0 87 670.5 88 521.0 89 521.0 90 549.0 91 577.0 92 367.0 93 157.0 94 127.5 95 98.0 96 98.0 97 61.0 98 24.0 99 25.0 100 26.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3482448.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.13456357166511 #Duplication Level Percentage of deduplicated Percentage of total 1 73.3097682046202 31.621848570462234 2 13.628524337126205 11.757208988155107 3 5.275584587629146 6.826801163183581 4 2.566477004582563 4.428154620375329 5 1.4105943311599975 3.0422685425625673 6 0.8450698749649379 2.187103214650452 7 0.5584124036245591 1.6860812726344903 8 0.37320422481082777 1.287840108825332 9 0.2747260797123653 1.066517059513262 >10 1.4970315110232686 12.082062492480324 >50 0.1515710871861146 4.597660709887568 >100 0.09803730690920519 7.872200359651854 >500 0.005399531992658465 1.6211439491889519 >1k 0.004599601326293719 3.9811476871203824 >5k 6.666088878686549E-4 2.18819928452034 >10k+ 3.3330444393432743E-4 3.7537619767882333 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 35286 1.0132527463439511 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34740 0.9975741202740143 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28116 0.8073630963046684 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 18601 0.5341357573752716 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13805 0.3964165437646162 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 9991 0.2868958847339573 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9242 0.2653880258944283 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 9135 0.26231547463163846 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8645 0.24824491277400268 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 7890 0.22656476134029854 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 7538 0.21645692914869083 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 6686 0.19199138077582206 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 6646 0.19084276348132118 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5257 0.15095702792977814 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5071 0.14561595751034906 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4701 0.1349912475362159 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 4432 0.12726679623069748 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4208 0.12083453938149255 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3634 0.10435188120540492 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3609 0.10363399539634187 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3531 0.10139419167206516 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 2.8715432362521997E-5 0.0 4 0.0 0.0 0.0 2.8715432362521997E-5 0.0 5 0.0 0.0 0.0 5.7430864725043995E-5 0.0 6 0.0 0.0 0.0 5.7430864725043995E-5 0.0 7 0.0 0.0 0.0 1.1486172945008799E-4 0.0 8 0.0 0.0 0.0 1.4357716181260998E-4 0.0 9 0.0 0.0 0.0 2.0100802653765396E-4 0.0 10 0.0 0.0 0.0 2.5843889126269797E-4 0.0 11 0.0 0.0 0.0 3.4458518835026394E-4 0.0 12 0.0 0.0 0.0 4.307314854378299E-4 0.0 13 0.0 0.0 0.0 5.455932148879179E-4 0.0 14 0.0 0.0 0.0 6.317395119754839E-4 0.0 15 0.0 0.0 0.0 8.614629708756598E-4 0.0 16 0.0 0.0 0.0 0.0015219179152136657 0.0 17 0.0 0.0 0.0 0.0022398037242767157 0.0 18 0.0 0.0 0.0 0.0028715432362521995 0.0 19 0.0 0.0 0.0 0.0035032827482276837 0.0 20 0.0 0.0 0.0 0.004651900042728563 0.0 21 0.0 0.0 0.0 0.006547118578655015 0.0 22 0.0 0.0 0.0 0.011199018621383578 0.0 23 0.0 0.0 0.0 0.018377876712014077 0.0 24 0.0 0.0 0.0 0.02908873298323478 0.0 25 0.0 0.0 0.0 0.033654486728875777 0.0 26 0.0 0.0 0.0 0.04040261333406845 0.0 27 0.0 0.0 0.0 0.07965660937363601 0.0 28 0.0 0.0 0.0 0.15302453905987973 0.0 29 0.0 0.0 0.0 0.24258797259858583 0.0 30 0.0 0.0 0.0 0.4025903617225584 0.0 31 0.0 0.0 0.0 0.622004980404589 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7990 0.0 29.93805 1 ATTGGAC 980 0.0 18.122448 3 GTATCAA 13540 0.0 17.666544 2 GTATTGG 1100 0.0 17.659092 1 TTGGACC 1640 0.0 16.92073 4 GGACCCT 1605 0.0 16.59813 6 CGAACGT 105 9.353915E-6 15.857144 4 TAACGGA 140 3.479545E-8 15.857142 28 TGGACCC 1720 0.0 15.703488 5 CGTCTGT 890 0.0 15.589889 34 TCGAACG 115 2.2122815E-5 14.478261 3 AATCGGC 115 2.2122815E-5 14.478261 25 GACCCTC 1840 0.0 14.076087 7 CGTTTAG 185 4.9094524E-9 14.000001 26 GTATGCG 80 0.006302009 13.875 33 TATACCG 160 1.7865204E-7 13.875 5 TATTGGA 1435 0.0 13.665505 2 TAACGCC 300 0.0 13.566667 4 CTAACGG 150 1.3075642E-6 13.566667 27 ACGGACC 260 1.8189894E-12 13.519231 8 >>END_MODULE