##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088131_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2534424 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.663084787707188 31.0 31.0 34.0 30.0 34.0 2 31.85464665738645 31.0 31.0 34.0 30.0 34.0 3 31.956954716337915 31.0 31.0 34.0 30.0 34.0 4 35.65464144910244 37.0 35.0 37.0 33.0 37.0 5 35.53952811368579 37.0 35.0 37.0 33.0 37.0 6 35.55163263921112 37.0 35.0 37.0 33.0 37.0 7 35.42983612844575 37.0 35.0 37.0 33.0 37.0 8 35.45725853290531 37.0 35.0 37.0 33.0 37.0 9 37.00646774178275 39.0 37.0 39.0 33.0 39.0 10 36.8514056842896 39.0 37.0 39.0 33.0 39.0 11 36.91447011234111 39.0 37.0 39.0 33.0 39.0 12 36.79820148483442 39.0 37.0 39.0 32.0 39.0 13 36.806755696757925 39.0 37.0 39.0 32.0 39.0 14 37.860679191800585 40.0 37.0 41.0 33.0 41.0 15 37.86168336474086 40.0 37.0 41.0 33.0 41.0 16 37.75284798439409 40.0 37.0 41.0 32.0 41.0 17 37.72433933706436 39.0 37.0 41.0 32.0 41.0 18 37.69492594767095 39.0 37.0 41.0 32.0 41.0 19 37.71222376366386 40.0 37.0 41.0 32.0 41.0 20 37.62483033620263 39.0 37.0 41.0 32.0 41.0 21 37.537659049945866 39.0 36.0 41.0 32.0 41.0 22 37.42459983017837 39.0 36.0 41.0 32.0 41.0 23 37.210052461624414 39.0 36.0 41.0 31.0 41.0 24 37.0580932787884 39.0 36.0 41.0 31.0 41.0 25 36.94518833470643 39.0 36.0 40.0 31.0 41.0 26 37.12673925120659 39.0 36.0 41.0 31.0 41.0 27 37.04631111447808 39.0 36.0 41.0 31.0 41.0 28 36.98005700703592 39.0 36.0 41.0 31.0 41.0 29 36.89777598381328 39.0 36.0 41.0 30.0 41.0 30 36.7226655839749 39.0 35.0 40.0 30.0 41.0 31 36.568217472688076 39.0 35.0 40.0 30.0 41.0 32 36.42698183098014 39.0 35.0 40.0 30.0 41.0 33 36.237513533647096 38.0 35.0 40.0 30.0 41.0 34 36.11990416757417 38.0 35.0 40.0 29.0 41.0 35 35.92513131188783 38.0 35.0 40.0 28.0 41.0 36 35.840533391413594 38.0 35.0 40.0 28.0 41.0 37 35.6999476015063 38.0 35.0 40.0 27.0 41.0 38 35.61647616973324 38.0 35.0 40.0 27.0 41.0 39 35.536309630906274 38.0 34.0 40.0 26.0 41.0 40 35.36939675444992 38.0 34.0 40.0 25.0 41.0 41 35.23781143170993 38.0 34.0 40.0 25.0 41.0 42 35.072684365362704 38.0 34.0 40.0 24.0 41.0 43 34.76292088458758 38.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 8.0 13 10.0 14 11.0 15 18.0 16 59.0 17 110.0 18 197.0 19 427.0 20 927.0 21 1805.0 22 3205.0 23 5682.0 24 9121.0 25 13767.0 26 20035.0 27 28617.0 28 38519.0 29 50565.0 30 64991.0 31 81782.0 32 101207.0 33 126711.0 34 156944.0 35 195773.0 36 252381.0 37 346753.0 38 485956.0 39 548842.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.87066726009539 22.131064099771784 13.217677862899023 23.7805907772338 2 18.31366811551658 22.427226067934964 35.54180358140548 23.717302235142977 3 19.31937986698358 25.414532059355498 31.526098237706083 23.739989835954837 4 13.611179502719356 15.86940464578934 35.66123900341853 34.85817684807277 5 11.990101103840557 39.77751946793433 34.81702351303492 13.415355915190197 6 32.44855635836782 37.00398986120712 15.328177132160997 15.219276648264064 7 26.36259757641184 33.588184139670396 21.532427091915167 18.5167911920026 8 27.513075949407046 34.45800702644861 19.858674002455786 18.170243021688556 9 25.796157233359533 14.072309921307562 21.872820017487207 38.2587128278457 10 16.22822384889032 27.892452091678425 33.629810955073026 22.24951310435823 11 33.16481378017254 22.257956837529946 23.557897179003987 21.01933220329353 12 20.123507353150064 27.07569846245143 31.236367711164352 21.564426473234157 13 30.563433742736024 20.983821175935834 27.051787704030584 21.400957377297562 14 21.11935493035104 22.026622222643095 27.152520651635243 29.701502195370626 15 23.442446883394414 29.220761798341556 24.86967452959726 22.467116788666775 16 22.924538277730953 28.254822397515174 25.536255969798265 23.284383354955605 17 20.8389756410135 27.33323232418885 26.989327752578102 24.83846428221955 18 21.75646221784516 26.807156182233122 29.63493874742348 21.80144285249824 19 21.4810544723377 25.438837384746986 30.449522258311944 22.630585884603367 20 24.436005972165667 25.05969798265799 29.345997354823027 21.158298690353313 21 23.916203445043134 25.588220439831694 28.57154130484875 21.924034810276417 22 22.918185749503632 25.16855900985786 29.391372556446747 22.521882684191752 23 22.177228435336787 26.430897119029805 30.011986944568076 21.37988750106533 24 21.44885780753339 25.87013854035473 28.844818388714756 23.836185263397127 25 22.379799118063907 26.4114449673772 29.506822852056324 21.701933062502565 26 23.041843038102545 26.020429099471908 28.620349239117054 22.317378623308493 27 22.171625584353684 26.937915676303568 28.363525597926788 22.52693314141596 28 22.15939400826381 26.31213246086685 28.65901680223988 22.869456728629466 29 21.35546380558265 26.26119386495709 29.516253002654647 22.86708932680562 30 21.011559233971898 26.592511750204384 30.40189802495557 21.99403099086814 31 21.983930076419732 26.056295237103182 29.85384450273514 22.105930183741947 32 22.653352398809353 26.119307582314562 28.562663548009333 22.664676470866755 33 23.19477719592302 25.959271219022543 28.455380788692025 22.390570796362407 34 22.17466375002762 27.51599574498979 28.551260562557808 21.75807994242479 35 21.35846251455952 28.120945824376665 28.80559843183303 21.714993229230785 36 21.90667386356821 25.707616405147675 30.038738585177537 22.34697114610657 37 21.940843363225724 25.73531500648668 29.703632857012085 22.620208773275504 38 21.949721120065153 25.497351666493056 30.439736997440047 22.113190216001744 39 22.55285619138708 25.197086201835212 30.384260881367915 21.865796725409798 40 21.477384999510736 25.404983538665988 30.041303270486708 23.07632819133657 41 21.887497908795055 25.13865083348327 29.995651871983537 22.97819938573814 42 20.36549527624423 26.356205591487452 30.30408487293365 22.974214259334666 43 20.81893163890493 25.97813152021919 29.99588861216592 23.207048228709954 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 147.0 1 258.0 2 369.0 3 669.5 4 970.0 5 970.0 6 1735.0 7 2500.0 8 2798.5 9 3097.0 10 5033.5 11 6970.0 12 6970.0 13 13468.0 14 19966.0 15 30703.5 16 41441.0 17 39697.0 18 37953.0 19 37953.0 20 42613.5 21 47274.0 22 41042.5 23 34811.0 24 40421.0 25 46031.0 26 46031.0 27 51473.0 28 56915.0 29 62855.5 30 68796.0 31 76065.5 32 83335.0 33 83335.0 34 91976.0 35 100617.0 36 109757.0 37 118897.0 38 125818.5 39 132740.0 40 132740.0 41 139093.5 42 145447.0 43 158375.0 44 171303.0 45 198492.0 46 225681.0 47 225681.0 48 227776.5 49 229872.0 50 213961.5 51 198051.0 52 187941.5 53 177832.0 54 177832.0 55 161613.5 56 145395.0 57 127458.0 58 109521.0 59 100522.5 60 91524.0 61 91524.0 62 81575.0 63 71626.0 64 62820.5 65 54015.0 66 45999.0 67 37983.0 68 37983.0 69 32280.0 70 26577.0 71 22746.0 72 18915.0 73 15393.5 74 11872.0 75 11872.0 76 9345.0 77 6818.0 78 5312.0 79 3806.0 80 3065.5 81 2325.0 82 2325.0 83 1812.0 84 1299.0 85 976.0 86 653.0 87 555.5 88 458.0 89 458.0 90 417.5 91 377.0 92 256.0 93 135.0 94 101.0 95 67.0 96 67.0 97 45.0 98 23.0 99 21.5 100 20.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2534424.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.74452272749993 #Duplication Level Percentage of deduplicated Percentage of total 1 76.68133342486598 38.14476333328245 2 12.884202252501197 12.818369835505033 3 4.434411740581958 6.617630868374152 4 2.0059623348666227 3.9914255582912608 5 1.0687070182113112 2.658116027822562 6 0.6203050532220394 1.8514067290792076 7 0.3852967890739157 1.3416483416644098 8 0.285949922625926 1.1379553939993776 9 0.20531596641699748 0.9192010281974047 >10 1.2295320381883208 11.59425966299674 >50 0.12449673214550346 4.288199158952007 >100 0.0661291930425205 5.9996963434601955 >500 0.004377756039809892 1.5752645409044634 >1k 0.0032634181387666402 3.131523753678875 >5k 3.9797782180080974E-4 1.2384346942415962 >10k+ 3.1838225744064777E-4 2.6921047295503104 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 20331 0.8021941080103407 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 19771 0.7800983576544414 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16300 0.6431441621449292 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11590 0.4573031189729895 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8256 0.3257544909612598 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6270 0.24739349059194515 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 5854 0.23097950461327701 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 5515 0.21760368430854504 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5383 0.2123954002960831 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 4764 0.1879717048134014 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 4490 0.17716056981783634 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 4087 0.16125952090100157 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 3809 0.1502905591171801 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3370 0.1329690691060375 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3007 0.118646288071767 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2883 0.11375365763581784 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 2658 0.10487590079639396 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.9456697064106086E-5 0.0 3 0.0 0.0 0.0 7.891339412821217E-5 0.0 4 0.0 0.0 0.0 7.891339412821217E-5 0.0 5 0.0 0.0 0.0 7.891339412821217E-5 0.0 6 0.0 0.0 0.0 7.891339412821217E-5 0.0 7 0.0 0.0 0.0 1.1837009119231826E-4 0.0 8 0.0 0.0 0.0 1.1837009119231826E-4 0.0 9 0.0 0.0 0.0 1.5782678825642434E-4 0.0 10 0.0 0.0 0.0 1.9728348532053043E-4 0.0 11 0.0 0.0 0.0 2.761968794487426E-4 0.0 12 0.0 0.0 0.0 3.9456697064106086E-4 0.0 13 0.0 0.0 0.0 4.3402366770516694E-4 0.0 14 0.0 0.0 0.0 4.7348036476927303E-4 0.0 15 0.0 0.0 0.0 7.891339412821217E-4 0.0 16 3.9456697064106086E-5 0.0 0.0 0.0014993544884360313 0.0 17 3.9456697064106086E-5 0.0 0.0 0.0022490317326540467 0.0 18 3.9456697064106086E-5 0.0 0.0 0.002761968794487426 0.0 19 3.9456697064106086E-5 0.0 0.0 0.003274905856320805 0.0 20 3.9456697064106086E-5 0.0 0.0 0.004616433556500412 0.0 21 3.9456697064106086E-5 0.0 0.0 0.006470898318513398 0.0 22 3.9456697064106086E-5 0.0 0.0 0.010968961783821491 0.0 23 3.9456697064106086E-5 0.0 0.0 0.01937323825847609 0.0 24 3.9456697064106086E-5 0.0 0.0 0.02994763307165652 0.0 25 3.9456697064106086E-5 0.0 0.0 0.03555048405475958 0.0 26 3.9456697064106086E-5 0.0 0.0 0.040956051552542116 0.0 27 3.9456697064106086E-5 0.0 0.0 0.08005763834307125 0.0 28 3.9456697064106086E-5 0.0 0.0 0.1446482514370129 0.0 29 3.9456697064106086E-5 0.0 0.0 0.22841481930411012 0.0 30 3.9456697064106086E-5 0.0 0.0 0.3689201175493919 0.0 31 3.9456697064106086E-5 0.0 0.0 0.5627314135282809 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4540 0.0 29.5837 1 ATTGGAC 805 0.0 19.763975 3 GTATTGG 875 0.0 18.605715 1 GTATCAA 7830 0.0 17.082375 2 TTGGACC 1240 0.0 16.858871 4 ACGTTTA 135 2.222805E-8 16.444445 26 GGACCCT 1295 0.0 16.428572 6 AACCGTG 85 5.367321E-4 15.235293 7 TATTGGA 1060 0.0 15.183963 2 GGCGCTA 110 1.4531628E-5 15.136364 10 GTACTAG 245 0.0 15.10204 1 TTTACAC 445 0.0 14.966291 3 TGGACCC 1345 0.0 14.855019 5 CGGTCGT 75 0.00410622 14.8 22 GAACCGA 90 8.2788646E-4 14.388889 6 CGACTAT 90 8.2788646E-4 14.388889 36 GTCGTAA 130 4.4487624E-6 14.230769 1 GACCCTC 1495 0.0 13.983278 7 GTACTGT 390 0.0 13.756409 6 TAACGCC 220 2.8558134E-10 13.454545 4 >>END_MODULE