##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088127_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 551431 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.636284503410216 31.0 31.0 34.0 30.0 34.0 2 31.80321382004276 31.0 31.0 34.0 30.0 34.0 3 31.90428539563427 31.0 31.0 34.0 30.0 34.0 4 35.604218841523235 37.0 35.0 37.0 33.0 37.0 5 35.52176246892177 37.0 35.0 37.0 33.0 37.0 6 35.543106934503136 37.0 35.0 37.0 33.0 37.0 7 35.39237003360348 37.0 35.0 37.0 33.0 37.0 8 35.456856796226546 37.0 35.0 37.0 33.0 37.0 9 36.95021679956332 39.0 37.0 39.0 33.0 39.0 10 36.840402516361976 39.0 37.0 39.0 32.0 39.0 11 36.90867760426962 39.0 37.0 39.0 33.0 39.0 12 36.798272131962115 39.0 37.0 39.0 32.0 39.0 13 36.792632260427865 39.0 37.0 39.0 32.0 39.0 14 37.766184708512945 40.0 37.0 41.0 32.0 41.0 15 37.77382483030515 40.0 37.0 41.0 32.0 41.0 16 37.64798859694141 39.0 36.0 41.0 32.0 41.0 17 37.71783233079025 39.0 37.0 41.0 32.0 41.0 18 37.70781475832879 39.0 37.0 41.0 32.0 41.0 19 37.76465958569612 40.0 37.0 41.0 32.0 41.0 20 37.676853495722945 39.0 37.0 41.0 32.0 41.0 21 37.59528027985369 39.0 37.0 41.0 32.0 41.0 22 37.515999281868446 39.0 36.0 41.0 32.0 41.0 23 37.265199091092086 39.0 36.0 41.0 31.0 41.0 24 37.11669637724393 39.0 36.0 41.0 31.0 41.0 25 36.991369727128145 39.0 36.0 41.0 31.0 41.0 26 37.13247350983169 39.0 36.0 41.0 31.0 41.0 27 37.048441237434965 39.0 36.0 41.0 31.0 41.0 28 36.9571206551681 39.0 35.0 41.0 31.0 41.0 29 36.87115341719998 39.0 35.0 41.0 31.0 41.0 30 36.66118335748262 39.0 35.0 40.0 30.0 41.0 31 36.44793092880161 38.0 35.0 40.0 30.0 41.0 32 36.28958292152599 38.0 35.0 40.0 30.0 41.0 33 36.0615815940707 38.0 35.0 40.0 30.0 41.0 34 35.906546784638515 38.0 35.0 40.0 29.0 41.0 35 35.673518536317324 38.0 35.0 40.0 27.0 41.0 36 35.58530804398012 38.0 35.0 40.0 27.0 41.0 37 35.41615904800419 38.0 34.0 40.0 26.0 41.0 38 35.26994311164951 38.0 34.0 40.0 25.0 41.0 39 35.13086315422963 38.0 34.0 40.0 25.0 41.0 40 34.89002794547278 38.0 34.0 40.0 24.0 41.0 41 34.71770538834414 38.0 33.0 40.0 23.0 41.0 42 34.46305340106015 38.0 33.0 40.0 22.0 41.0 43 34.13889861106829 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 4.0 14 3.0 15 3.0 16 7.0 17 19.0 18 37.0 19 69.0 20 210.0 21 331.0 22 710.0 23 1173.0 24 1940.0 25 3150.0 26 4574.0 27 6569.0 28 9034.0 29 11728.0 30 14878.0 31 18397.0 32 23054.0 33 28466.0 34 35429.0 35 43608.0 36 56773.0 37 78424.0 38 100427.0 39 112413.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.701737842087226 22.98909564387929 14.055793018528156 22.25337349550533 2 17.728419330795695 22.72124708259057 36.61056415036514 22.939769436248596 3 19.680431459239685 25.951206950642963 32.47496060250512 21.893400987612228 4 12.898440602722733 15.417704118919684 35.28655443745455 36.39730084090303 5 10.718113417635207 41.40572437893408 34.348268414361904 13.527893789068804 6 31.526156491020636 36.22901142663361 15.295295331600872 16.94953675074488 7 24.889061369418837 35.475335989452894 20.717369897593716 18.91823274353455 8 28.68518454711469 33.72770119924342 19.738462291746384 17.848651961895502 9 25.46574276745413 13.674784333851377 23.477098675990288 37.3823742227042 10 16.47259584608047 28.118658544768067 32.75006301785717 22.658682591294287 11 31.43747812509634 21.65347976446736 24.985718974812805 21.923323135623495 12 19.910559979399054 27.650059572276497 31.708772267065143 20.730608181259306 13 31.492426069626116 20.96853459453676 28.757541741396476 18.781497594440648 14 20.666955611853524 22.395367688795154 28.247233108040714 28.69044359131061 15 22.98111640440962 28.9410642491989 27.061772007739865 21.016047338651617 16 21.89285694855748 28.884121494801708 26.347811421555917 22.8752101350849 17 19.24556290814263 27.080632028304542 27.531459058340936 26.14234600521189 18 20.573743587139642 26.703612963362595 32.134936193286194 20.587707256211566 19 19.716700729556372 24.529451554228906 33.309153819788875 22.444693896425843 20 25.12934528526688 23.466761933950032 31.90897863921325 19.494914141569843 21 23.736423958754585 24.824683414606724 30.636833982855517 20.802058643783177 22 22.048814810919225 23.87207102973899 32.01434086948321 22.064773289858568 23 20.816022312855097 26.354158543861335 33.29446476531062 19.535354377972947 24 19.548411315286955 25.150200115698972 31.2934891219391 24.007899447074973 25 20.797887677696757 26.544572213023933 32.404235525387584 20.25330458389173 26 22.794148315927107 25.059708286258843 30.703569440238216 21.442573957575835 27 20.922291274882987 27.234051041744117 30.1851002210612 21.658557462311695 28 20.56032395712247 26.185869129591914 30.634476480284935 22.619330433000684 29 19.548411315286955 25.998538348406235 31.96301985198511 22.490030484321704 30 18.86110864278577 26.297941174870477 34.12938336800071 20.711566814343048 31 20.349780842934113 25.811207567220556 32.731747036347244 21.10726455349808 32 22.009643998977207 25.788176580569466 30.384218515099803 21.817960905353527 33 23.012670669585134 25.76296943769937 29.996681361766026 21.227678530949476 34 20.734053761939393 29.089586911145727 30.078287219978566 20.098072106936314 35 19.285459105490986 29.91181126922498 30.442068001254917 20.360661624029117 36 20.260558437955066 25.556053250542675 33.07159009921459 21.111798212287667 37 20.55524625927813 26.116413476935463 31.95993696400819 21.368403299778212 38 20.754183206965152 25.29509585061413 32.97638326463329 20.97433767778743 39 21.915343896153825 24.90429446295185 32.8001146108942 20.380247030000127 40 20.05853860229113 25.772218101630123 31.51491301722246 22.654330278856285 41 21.309465735513598 25.347867638924903 31.30981029358161 22.032856331979886 42 18.560799084563616 27.25853279920788 31.833719903306125 22.346948212922378 43 19.544603041903702 26.90653953078445 31.278256028406094 22.270601398905757 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 33.0 1 50.5 2 68.0 3 170.0 4 272.0 5 272.0 6 519.5 7 767.0 8 853.5 9 940.0 10 1580.5 11 2221.0 12 2221.0 13 4436.0 14 6651.0 15 10609.5 16 14568.0 17 13754.5 18 12941.0 19 12941.0 20 14058.0 21 15175.0 22 12150.5 23 9126.0 24 10165.5 25 11205.0 26 11205.0 27 11981.5 28 12758.0 29 13482.5 30 14207.0 31 15173.0 32 16139.0 33 16139.0 34 17491.5 35 18844.0 36 20712.0 37 22580.0 38 23468.0 39 24356.0 40 24356.0 41 25638.5 42 26921.0 43 31497.0 44 36073.0 45 47880.5 46 59688.0 47 59688.0 48 59654.5 49 59621.0 50 53512.5 51 47404.0 52 44451.5 53 41499.0 54 41499.0 55 35649.0 56 29799.0 57 24428.0 58 19057.0 59 16466.5 60 13876.0 61 13876.0 62 12251.5 63 10627.0 64 9293.5 65 7960.0 66 6769.0 67 5578.0 68 5578.0 69 4765.5 70 3953.0 71 3268.0 72 2583.0 73 2143.0 74 1703.0 75 1703.0 76 1315.0 77 927.0 78 731.5 79 536.0 80 437.0 81 338.0 82 338.0 83 252.5 84 167.0 85 131.0 86 95.0 87 83.5 88 72.0 89 72.0 90 68.5 91 65.0 92 40.0 93 15.0 94 15.0 95 15.0 96 15.0 97 9.5 98 4.0 99 4.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 551431.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.98223907788547 #Duplication Level Percentage of deduplicated Percentage of total 1 84.49098837934524 46.45503723000003 2 9.246985179837678 10.168398998149978 3 2.3944515620309663 3.9495692473200865 4 1.0654611692961533 2.34325762953778 5 0.6332672908553876 1.7409226793007875 6 0.37375004474643964 1.2329768589371481 7 0.27356675454343055 1.0528918891447674 8 0.20622767608684806 0.9071087512867042 9 0.15968380877737898 0.7901796015958676 >10 1.01205537218906 10.324468024763702 >50 0.07938954617590704 3.1177119648699967 >100 0.051933994485300436 6.145941095377845 >500 0.0066157954758344515 2.631922158830871 >1k 0.004631056833084116 5.331865801139231 >5k 9.923693213751677E-4 3.8077480697452226 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 7552 1.3695276471580307 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 7241 1.3131289318155854 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6143 1.1140106377769838 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4956 0.8987525184474576 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2936 0.5324328882489378 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2528 0.4584435768029001 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 2416 0.4381327854255564 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 2255 0.4089360228206249 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2074 0.3761123331840248 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 1980 0.3590657761351828 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 1827 0.3313197843429187 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 1748 0.3169934225678281 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 1683 0.3052059097149054 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1380 0.25025796518512744 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1346 0.24409218923129092 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1112 0.20165714296076936 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1075 0.19494732795218261 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 979 0.17753807820017373 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 968 0.17554326833275605 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 890 0.16139825290924886 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 853 0.15468843790066208 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 819 0.14852266194682562 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 801 0.14525842761832394 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 747 0.13546572463281897 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 743 0.1347403392264853 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 730 0.13238283665590073 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 729 0.1322014903043173 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 727 0.13183879760115044 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 686 0.12440359718623002 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 671 0.12168340191247862 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 646 0.11714974312289297 No Hit CGCATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCA 639 0.115880318661809 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTCTGTCTC 612 0.11098396716905652 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTCTGTCTC 607 0.11007723541113937 No Hit GGGGAGAAGAGTAAAATGCAGCAACGCACATGCGAGGGTCCAA 570 0.10336742040255263 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 3.626927031668513E-4 0.0 12 0.0 0.0 0.0 0.001088078109500554 0.0 13 0.0 0.0 0.0 0.0012694244610839797 0.0 14 0.0 0.0 0.0 0.0023575025705845336 0.0 15 0.0 0.0 0.0 0.003264234328501662 0.0 16 0.0 0.0 0.0 0.004715005141169067 0.0 17 0.0 0.0 0.0 0.007797893118087304 0.0 18 0.0 0.0 0.0 0.008885971227587858 0.0 19 0.0 0.0 0.0 0.011424820149755818 0.0 20 0.0 0.0 0.0 0.013963669071923776 0.0 21 0.0 0.0 0.0 0.018134635158342568 0.0 22 0.0 0.0 0.0 0.031372918823932644 0.0 23 0.0 0.0 0.0 0.05059563209177576 0.0 24 0.0 0.0 0.0 0.07217584793020342 0.0 25 0.0 0.0 0.0 0.08106181915779127 0.0 26 0.0 0.0 0.0 0.08922240497904543 0.0 27 0.0 0.0 0.0 0.1383672662581538 0.0 28 0.0 0.0 0.0 0.2127192704073583 0.0 29 0.0 0.0 0.0 0.3059312951212391 0.0 30 0.0 0.0 0.0 0.4932620763069178 0.0 31 0.0 0.0 0.0 0.7074321175269436 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1720 0.0 30.116278 1 GTATTGG 325 0.0 26.184614 1 ATTGGAC 315 0.0 25.25397 3 AATGCGT 55 1.9003319E-5 23.545454 35 TGCGTTA 55 1.9003319E-5 23.545454 37 TCCGGCG 40 0.0019299203 23.125 17 CGTTTAG 40 0.0019299203 23.125 26 TTGGGTA 40 0.0019299203 23.125 4 CGTCTGT 105 4.0017767E-11 22.904764 34 TGGACCC 475 0.0 22.589474 5 TAACACC 50 2.6996317E-4 22.2 4 AAATGCG 75 3.7334758E-7 22.2 34 ATGCGTT 60 3.721762E-5 21.583334 36 GGACCCT 485 0.0 21.360825 6 TATTGGA 395 0.0 21.075949 2 TTGGACC 505 0.0 20.88119 4 GTATTAG 45 0.0038233225 20.555555 1 ACCGCCG 45 0.0038233225 20.555555 12 GGGGTTA 45 0.0038233225 20.555555 6 GTAAGTG 45 0.0038233225 20.555555 3 >>END_MODULE