##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088126_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 639706 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.527101512257193 31.0 31.0 34.0 30.0 34.0 2 31.70266341100443 31.0 31.0 34.0 30.0 34.0 3 31.790858613175427 31.0 31.0 34.0 30.0 34.0 4 35.522186754540364 37.0 35.0 37.0 33.0 37.0 5 35.42562520908042 37.0 35.0 37.0 33.0 37.0 6 35.439948976561105 37.0 35.0 37.0 33.0 37.0 7 35.297338152213676 37.0 35.0 37.0 32.0 37.0 8 35.333106145635654 37.0 35.0 37.0 32.0 37.0 9 36.828421180980015 39.0 37.0 39.0 32.0 39.0 10 36.694289251624966 39.0 35.0 39.0 32.0 39.0 11 36.78513567169919 39.0 37.0 39.0 32.0 39.0 12 36.671366221357935 39.0 35.0 39.0 32.0 39.0 13 36.6803047024727 39.0 35.0 39.0 32.0 39.0 14 37.63047399899329 39.0 36.0 41.0 32.0 41.0 15 37.65071142055882 39.0 36.0 41.0 32.0 41.0 16 37.517150065811485 39.0 36.0 41.0 32.0 41.0 17 37.58161405395604 39.0 36.0 41.0 32.0 41.0 18 37.56922711370536 39.0 36.0 41.0 32.0 41.0 19 37.61001147402088 39.0 37.0 41.0 32.0 41.0 20 37.53696854492532 39.0 36.0 41.0 32.0 41.0 21 37.45118538828775 39.0 36.0 41.0 32.0 41.0 22 37.379547792267076 39.0 36.0 41.0 32.0 41.0 23 37.15015022525973 39.0 36.0 41.0 31.0 41.0 24 37.009141699468195 39.0 36.0 40.0 31.0 41.0 25 36.90677436197253 39.0 36.0 40.0 31.0 41.0 26 36.971371223655865 39.0 36.0 40.0 31.0 41.0 27 36.88365123978828 39.0 35.0 40.0 31.0 41.0 28 36.77679121346368 39.0 35.0 40.0 30.0 41.0 29 36.67257927860611 39.0 35.0 40.0 30.0 41.0 30 36.47447577480905 38.0 35.0 40.0 30.0 41.0 31 36.30649079420859 38.0 35.0 40.0 30.0 41.0 32 36.15563243114806 38.0 35.0 40.0 30.0 41.0 33 35.945528101971846 38.0 35.0 40.0 29.0 41.0 34 35.80413033487258 38.0 35.0 40.0 29.0 41.0 35 35.58530481189796 38.0 34.0 40.0 27.0 41.0 36 35.49038151901029 38.0 34.0 40.0 27.0 41.0 37 35.33204941019781 38.0 34.0 40.0 26.0 41.0 38 35.17517422065762 38.0 34.0 40.0 25.0 41.0 39 35.062267666709396 38.0 34.0 40.0 25.0 41.0 40 34.8457166260751 38.0 33.0 40.0 24.0 41.0 41 34.69591968810673 38.0 33.0 40.0 23.0 41.0 42 34.46786648866823 38.0 33.0 40.0 22.0 41.0 43 34.12192944884056 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 5.0 16 7.0 17 19.0 18 56.0 19 109.0 20 211.0 21 451.0 22 865.0 23 1412.0 24 2354.0 25 3842.0 26 5589.0 27 7925.0 28 10791.0 29 14180.0 30 18185.0 31 22568.0 32 28312.0 33 34558.0 34 42531.0 35 52431.0 36 66569.0 37 89221.0 38 114744.0 39 122770.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.379643148571375 23.185338264765377 14.044576727434166 22.39044185922908 2 17.771913972981338 22.81938890677905 36.32496803218979 23.08372908804982 3 19.673256152044846 25.938790631946553 32.498053793461374 21.88989942254723 4 12.935942448562306 15.707840789362612 35.54992449656561 35.80629226550947 5 10.839979615635933 41.17328897962501 34.68186948379412 13.304861920944935 6 31.211212650811465 36.61134958871732 15.61607988669795 16.561357873773265 7 24.678993162484016 35.30825097779292 21.209586903984018 18.803168955739043 8 28.165594820120493 33.95294088221777 19.93681472426396 17.94464957339778 9 25.416206820007943 13.765854939612884 23.487039358705406 37.33089888167377 10 16.380806182840242 28.22327756813286 33.16851803797369 22.227398211053202 11 31.541676957852516 21.84331552306841 24.93364139151423 21.68136612756485 12 19.785182568242284 27.864987978852785 31.698780377235792 20.651049075669135 13 30.829631111791976 21.197706446398815 28.666449900423007 19.3062125413862 14 20.641200801618243 22.618984345933914 28.318164907004157 28.42164994544369 15 23.062938287275717 29.105245222023868 26.713208880329404 21.118607610371015 16 21.813145413674405 28.619240713702858 26.801374381356435 22.766239491266298 17 19.344511384917446 27.297539807349004 27.801521323858147 25.556427483875403 18 20.52614794921417 26.77964564972034 31.99923089669317 20.69497550437232 19 19.7689250999678 24.99460689754356 33.091138741859545 22.1453292606291 20 24.57503915861349 24.077310514517606 31.718164281716916 19.629486045151992 21 23.485007175171095 25.16656088890834 30.621097816809595 20.727334119110967 22 21.907720108925037 24.563002379217952 31.808830931709252 21.720446580147758 23 20.893035238062485 26.514054893966915 32.921373255839406 19.6715366121312 24 19.64855730601245 25.68508033377833 31.12851841314604 23.537843947063184 25 20.754377792298335 26.860932991092785 32.023617099104904 20.36107211750398 26 22.355738417335463 25.705402169121438 30.726146073352446 21.21271334019065 27 20.860363979703177 27.251424873301172 30.297199025802477 21.591012121193174 28 20.48065830240767 26.58361809956449 30.61750241517197 22.318221182855876 29 19.626984896186688 26.403691695872794 31.879332068168814 22.089991339771707 30 18.81161033349695 26.807939897390366 33.69985587129087 20.68059389782181 31 20.37639165491648 26.17327334744398 32.55245378345678 20.897881214182764 32 21.740768415490866 26.17686874908161 30.373171425623646 21.70919140980388 33 22.48110850922142 26.200317020631353 30.06803125185632 21.2505432182909 34 20.634635285584316 28.85763147445858 30.160104798141646 20.34762844181546 35 19.293706796559672 29.77367728300188 30.418192106999154 20.514423813439297 36 20.28697557940679 25.86188030126339 32.71956179870128 21.13158232062854 37 20.62259850618878 26.27644574226285 31.68783785051258 21.41311790103579 38 20.68246975954579 25.719471132051286 32.67313422103278 20.924924887370135 39 21.7162258912688 25.3833792398383 32.435994034759716 20.46440083413318 40 19.977927360381177 26.135130825723067 31.431782725189382 22.455159088706374 41 20.94212028650661 25.620832069732035 31.394265490709795 22.042782153051558 42 18.663260935492243 27.43525932225116 31.6612631427562 22.240216599500396 43 19.40922861439474 26.927057116863057 31.37238043726337 22.291333831478834 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 52.0 1 71.0 2 90.0 3 219.5 4 349.0 5 349.0 6 624.0 7 899.0 8 1043.0 9 1187.0 10 1906.0 11 2625.0 12 2625.0 13 5093.0 14 7561.0 15 11872.5 16 16184.0 17 15255.0 18 14326.0 19 14326.0 20 15752.0 21 17178.0 22 13880.5 23 10583.0 24 11785.5 25 12988.0 26 12988.0 27 14278.0 28 15568.0 29 16522.0 30 17476.0 31 18909.5 32 20343.0 33 20343.0 34 22116.5 35 23890.0 36 26017.0 37 28144.0 38 29266.5 39 30389.0 40 30389.0 41 31974.0 42 33559.0 43 38013.0 44 42467.0 45 53810.0 46 65153.0 47 65153.0 48 65892.0 49 66631.0 50 60158.0 51 53685.0 52 50145.5 53 46606.0 54 46606.0 55 40223.0 56 33840.0 57 28050.5 58 22261.0 59 19499.0 60 16737.0 61 16737.0 62 14591.5 63 12446.0 64 10888.0 65 9330.0 66 7911.0 67 6492.0 68 6492.0 69 5330.5 70 4169.0 71 3428.5 72 2688.0 73 2193.5 74 1699.0 75 1699.0 76 1287.0 77 875.0 78 701.5 79 528.0 80 414.0 81 300.0 82 300.0 83 217.5 84 135.0 85 109.0 86 83.0 87 84.5 88 86.0 89 86.0 90 76.0 91 66.0 92 44.5 93 23.0 94 17.5 95 12.0 96 12.0 97 7.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 639706.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.75890621379859 #Duplication Level Percentage of deduplicated Percentage of total 1 83.98454594604455 45.98901874867912 2 9.382475303754095 10.275481704231039 3 2.595724664466014 4.264171303750149 4 1.0746853649629375 2.3539438043738965 5 0.6138395594373782 1.680659143277542 6 0.40736753647232693 1.3384200434540596 7 0.29370301920707836 1.1257999258428921 8 0.21691145962027214 0.9502267419235714 9 0.16936725916946388 0.8346929274493912 >10 1.1128115678958768 11.516441128314549 >50 0.08330131716455828 3.161221508717403 >100 0.05438916817122103 5.992792470706109 >500 0.005725175596970076 2.217886549345204 >1k 0.0042938816977275565 4.757271813278507 >5k 8.587763395455114E-4 3.5419721866565994 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 8175 1.2779307994610025 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 7935 1.2404135649814134 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6486 1.0139032618108943 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4755 0.7433102081268582 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3209 0.5016366893541722 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2562 0.40049647806961325 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 2381 0.37220223039958983 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 2295 0.3587585547110704 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2066 0.32296086014512915 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 1907 0.2981056923024014 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 1793 0.2802850059245966 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 1682 0.2629332849777867 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 1626 0.2541792635992159 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1432 0.2238528323948814 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1322 0.20665743325840308 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1209 0.18899306869092988 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1101 0.17211031317511483 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1009 0.15772870662460567 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 953 0.1489746852460349 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 935 0.1461608926600657 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 841 0.13146664248889334 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 809 0.12646434455828146 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 803 0.12552641369629175 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 802 0.12537009188596013 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 782 0.1222436556793277 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 768 0.12005515033468499 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 754 0.1178666449900423 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 748 0.11692871412805257 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 711 0.11114480714578259 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 667 0.10426664749119126 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 646 0.1009838894742272 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 1.563218103316211E-4 0.0 12 0.0 0.0 0.0 6.252872413264844E-4 0.0 13 0.0 0.0 0.0 6.252872413264844E-4 0.0 14 0.0 0.0 0.0 0.001563218103316211 0.0 15 1.563218103316211E-4 0.0 0.0 0.0021885053446426953 0.0 16 1.563218103316211E-4 0.0 0.0 0.0037517234479589063 0.0 17 1.563218103316211E-4 0.0 0.0 0.00719080327525457 0.0 18 1.563218103316211E-4 0.0 0.0 0.007972412326912676 0.0 19 1.563218103316211E-4 0.0 0.0 0.008910343188902402 0.0 20 1.563218103316211E-4 0.0 0.0 0.012036779395534825 0.0 21 1.563218103316211E-4 0.0 0.0 0.01735172094680994 0.0 22 1.563218103316211E-4 0.0 0.0 0.027981604049360176 0.0 23 1.563218103316211E-4 0.0 0.0 0.04564596861683336 0.0 24 1.563218103316211E-4 0.0 0.0 0.06753102206326031 0.0 25 1.563218103316211E-4 0.0 0.0 0.07440918171785164 0.0 26 1.563218103316211E-4 0.0 0.0 0.08347584671708566 0.0 27 1.563218103316211E-4 0.0 0.0 0.12630802274794983 0.0 28 1.563218103316211E-4 0.0 0.0 0.20024823903480662 0.0 29 1.563218103316211E-4 0.0 0.0 0.2921654635097998 0.0 30 1.563218103316211E-4 0.0 0.0 0.47193554539116406 0.0 31 1.563218103316211E-4 0.0 0.0 0.6696826354606648 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1695 0.0 28.923306 1 GGCGTCG 35 8.8650786E-4 26.42857 8 GTATACG 70 1.9201434E-7 23.785713 1 GTAAGAC 55 1.9009494E-5 23.545454 3 CGCTTAA 40 0.0019302564 23.125 29 GGGCGTC 65 2.6797588E-6 22.76923 7 GACCGTC 50 2.7002883E-4 22.199999 22 CGTCTGT 145 0.0 21.689655 34 ACGGGCG 60 3.7229613E-5 21.583334 5 CGGGCGT 60 3.7229613E-5 21.583334 6 TATACGG 70 5.096088E-6 21.142857 2 GTAGACC 45 0.003823981 20.555557 3 GTATACT 45 0.003823981 20.555557 4 GAACCGC 45 0.003823981 20.555557 6 AGTACGG 45 0.003823981 20.555557 36 CGTGGTT 55 5.1396684E-4 20.181818 36 AGACCGT 55 5.1396684E-4 20.181818 21 GTATTGG 240 0.0 20.041668 1 TCGACAA 65 6.896018E-5 19.923077 13 CGAATTA 60 9.230712E-4 18.5 15 >>END_MODULE