##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088118_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 999455 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.573902777013473 31.0 31.0 34.0 30.0 34.0 2 31.756320194506007 31.0 31.0 34.0 30.0 34.0 3 31.837246299233083 31.0 31.0 34.0 30.0 34.0 4 35.558125178222134 37.0 35.0 37.0 33.0 37.0 5 35.44589901496315 37.0 35.0 37.0 33.0 37.0 6 35.47684688155044 37.0 35.0 37.0 33.0 37.0 7 35.32891025608957 37.0 35.0 37.0 32.0 37.0 8 35.36815764591702 37.0 35.0 37.0 33.0 37.0 9 36.87341701227169 39.0 37.0 39.0 33.0 39.0 10 36.74213946600897 39.0 35.0 39.0 32.0 39.0 11 36.827501988583776 39.0 37.0 39.0 32.0 39.0 12 36.7106883251372 39.0 35.0 39.0 32.0 39.0 13 36.72443881915644 39.0 35.0 39.0 32.0 39.0 14 37.710297111925996 39.0 37.0 41.0 32.0 41.0 15 37.7177661825695 39.0 37.0 41.0 32.0 41.0 16 37.593315356869496 39.0 36.0 41.0 32.0 41.0 17 37.63450380457349 39.0 36.0 41.0 32.0 41.0 18 37.62674057361262 39.0 36.0 41.0 32.0 41.0 19 37.65505000225123 39.0 37.0 41.0 32.0 41.0 20 37.57434801967072 39.0 36.0 41.0 32.0 41.0 21 37.49156390232677 39.0 36.0 41.0 32.0 41.0 22 37.40779224677449 39.0 36.0 41.0 32.0 41.0 23 37.1728612093591 39.0 36.0 41.0 31.0 41.0 24 37.033547283269385 39.0 36.0 41.0 31.0 41.0 25 36.93203696014328 39.0 36.0 40.0 31.0 41.0 26 37.01521729342492 39.0 36.0 41.0 31.0 41.0 27 36.924440820247035 39.0 36.0 41.0 31.0 41.0 28 36.81260186801807 39.0 35.0 41.0 30.0 41.0 29 36.696858788039485 39.0 35.0 40.0 30.0 41.0 30 36.52920441640694 39.0 35.0 40.0 30.0 41.0 31 36.36772741143923 38.0 35.0 40.0 30.0 41.0 32 36.204804618517095 38.0 35.0 40.0 30.0 41.0 33 36.00080143678305 38.0 35.0 40.0 29.0 41.0 34 35.841123412259684 38.0 35.0 40.0 29.0 41.0 35 35.63681906639118 38.0 34.0 40.0 27.0 41.0 36 35.52123607366015 38.0 34.0 40.0 27.0 41.0 37 35.37228589581322 38.0 34.0 40.0 26.0 41.0 38 35.24781706029786 38.0 34.0 40.0 25.0 41.0 39 35.14001931052424 38.0 34.0 40.0 25.0 41.0 40 34.921664307047344 38.0 34.0 40.0 24.0 41.0 41 34.77582782616526 38.0 33.0 40.0 23.0 41.0 42 34.56859688530249 38.0 33.0 40.0 23.0 41.0 43 34.23741439084301 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 5.0 14 5.0 15 4.0 16 17.0 17 42.0 18 77.0 19 169.0 20 354.0 21 710.0 22 1319.0 23 2342.0 24 3826.0 25 5927.0 26 8718.0 27 12096.0 28 16612.0 29 22000.0 30 27893.0 31 34547.0 32 42890.0 33 52762.0 34 65606.0 35 79679.0 36 101997.0 37 138659.0 38 180996.0 39 200199.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.5699106012777 22.761104802117156 13.844245113586906 22.824739483018245 2 18.168501833499256 22.354783356929527 36.08446603398852 23.39224877558269 3 19.911251632139514 25.56633365184025 31.93740588620798 22.585008829812246 4 13.378291168686934 15.68254698810852 35.01208158446353 35.927080258741015 5 11.349485469580923 40.53559189758418 34.44817425496896 13.666748377865936 6 31.98963435072114 35.994116793652545 15.256614855096027 16.759634000530287 7 25.271773116348413 34.79656412744946 21.031862364988918 18.899800391213212 8 28.02067126583988 34.25316797654722 19.724249716095272 18.001911041517626 9 25.436562926795105 13.849347894602559 23.056865991965623 37.65722318663672 10 16.644771400413223 27.858182709576717 33.07142392603969 22.425621963970364 11 31.95611608326538 21.56465273574098 24.56008524645932 21.91914593453432 12 19.827906208883842 27.334097082910187 31.519578170102708 21.318418538103266 13 31.14517411989534 20.732098993951702 28.451305961749153 19.6714209244038 14 20.779024568389772 22.31606225392839 27.871990234677902 29.032922943003936 15 23.411459245288682 28.547958637457416 26.463322510768368 21.577259606485537 16 22.23481797579681 28.277711352687213 26.48373363483098 23.003737036684992 17 19.778479271202805 26.853235013082127 27.68078602838547 25.687499687329595 18 20.96162408512639 26.376875397091414 31.48165750333932 21.17984301444287 19 20.380907594639076 24.59680525886608 32.513319759268796 22.50896738722604 20 24.843739838211825 23.653291043618772 31.478956031036915 20.024013087132488 21 23.825885107383524 24.8318333491753 30.207563121901437 21.134718421539738 22 22.383098788839916 23.974165920426632 31.40111360691577 22.24162168381768 23 21.26899160042223 26.03328814203741 32.51211910491218 20.185601152628184 24 20.245133597810806 24.975611708381066 30.75686249005708 24.022392203751046 25 21.14182229314977 26.173964810821897 31.874871805133797 20.809341090894538 26 22.767108073900275 25.11668859528443 30.443791866567278 21.672411464248015 27 21.462797224487346 26.667233642335077 29.81665007429049 22.053319058887094 28 21.209659264299045 25.864195986812817 30.273098838867185 22.65304591002096 29 20.220119965381134 25.75743780360296 31.490662411014004 22.5317798200019 30 19.67842474148411 25.79305721618282 33.20609732304106 21.322420719292015 31 20.9413130155935 25.259366354663292 32.19964880860069 21.599671821142522 32 22.142067426747577 25.399642805328902 30.18194916229345 22.276340605630068 33 23.177031482157776 25.20433636331801 29.8894897719257 21.729142382598514 34 21.30431084941293 28.049587024928584 29.79954074970859 20.846561375949893 35 20.140676668784486 28.629302970118715 30.149231331075438 21.080789030021364 36 20.93050712638388 24.98921912442281 32.34602858557914 21.73424516361417 37 21.06628112321215 25.29628647612949 31.53548684032798 22.10194556033038 38 21.187247049642053 24.68435297236994 32.43057466319144 21.697825314796564 39 22.239920756812463 24.39289412729938 32.236668984596605 21.130516131291554 40 20.821847907109376 24.984916779644905 31.184895768193666 23.008339545052053 41 21.551345483288394 24.74048356354213 31.099849417932774 22.6083215352367 42 19.253693262828243 26.464723274184433 31.418322986027388 22.863260476959944 43 19.906549069242736 26.191774517111828 31.036815064209993 22.864861349435444 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 44.0 1 89.5 2 135.0 3 288.0 4 441.0 5 441.0 6 849.5 7 1258.0 8 1385.5 9 1513.0 10 2526.5 11 3540.0 12 3540.0 13 7266.5 14 10993.0 15 17009.5 16 23026.0 17 21864.5 18 20703.0 19 20703.0 20 22972.5 21 25242.0 22 20275.0 23 15308.0 24 16801.5 25 18295.0 26 18295.0 27 20028.0 28 21761.0 29 23039.5 30 24318.0 31 26482.5 32 28647.0 33 28647.0 34 31712.0 35 34777.0 36 38329.0 37 41881.0 38 44285.5 39 46690.0 40 46690.0 41 49366.0 42 52042.0 43 59093.5 44 66145.0 45 83867.0 46 101589.0 47 101589.0 48 102656.0 49 103723.0 50 94085.0 51 84447.0 52 79846.0 53 75245.0 54 75245.0 55 65427.5 56 55610.0 57 47110.5 58 38611.0 59 34337.5 60 30064.0 61 30064.0 62 26527.5 63 22991.0 64 20001.5 65 17012.0 66 14282.5 67 11553.0 68 11553.0 69 9748.0 70 7943.0 71 6796.0 72 5649.0 73 4597.5 74 3546.0 75 3546.0 76 2765.5 77 1985.0 78 1557.0 79 1129.0 80 916.5 81 704.0 82 704.0 83 532.0 84 360.0 85 275.0 86 190.0 87 164.0 88 138.0 89 138.0 90 134.5 91 131.0 92 84.0 93 37.0 94 30.0 95 23.0 96 23.0 97 14.0 98 5.0 99 8.0 100 11.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 999455.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.4297570117891 #Duplication Level Percentage of deduplicated Percentage of total 1 80.88236244030169 41.59760246844173 2 10.943483347371695 11.256413788357735 3 3.3198361644813676 5.122151017746799 4 1.4816038100840356 3.047940957614515 5 0.7822917501249216 2.011653731062598 6 0.4829119024157112 1.4901625079604504 7 0.32139327202517914 1.1570424519835159 8 0.23634584367943326 0.9724167448943636 9 0.18844540953021355 0.8722531459913372 >10 1.194216342445046 11.718312700775275 >50 0.09733670053835657 3.4577166832672717 >100 0.056873803875874616 5.429856316194607 >500 0.006840491809528965 2.316283011288691 >1k 0.0052769508244937735 5.5220291525415215 >5k 3.90885246258798E-4 1.6566992098620121 >10k+ 3.90885246258798E-4 2.371466112017622 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 12193 1.2199648808600687 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 11400 1.1406216387931423 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 9353 0.9358100164589701 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7129 0.7132887423645886 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4804 0.48066196076861895 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3995 0.3997178462261932 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 3930 0.393214301794478 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 3492 0.3493904177776888 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2985 0.2986627712103096 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 2842 0.284354973460536 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2764 0.27655072014247767 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 2543 0.2544386690746457 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 2516 0.2517371967722409 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2165 0.21661805684097835 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2076 0.20771320369601434 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1654 0.16549019215472432 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 1582 0.15828626601497817 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1549 0.15498446653426118 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1477 0.14778054039451502 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1436 0.14367830467604845 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1413 0.14137705049251842 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1349 0.13497356059052182 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1313 0.13137159752064875 No Hit AGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTTGATACC 1174 0.1174640178897499 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1171 0.11716385430059383 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1146 0.11466249105762641 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1138 0.11386205481987684 No Hit CATGTGCGTTGCTGCATTTTACTCTTCTCCCCTCGGCAGCAAC 1129 0.11296156405240856 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 1126 0.11266140046325247 No Hit AACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAA 1121 0.11216112781465899 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 1047 0.10475709261547543 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.0005452971869668E-4 0.0 5 0.0 0.0 0.0 1.0005452971869668E-4 0.0 6 0.0 0.0 0.0 1.0005452971869668E-4 0.0 7 0.0 0.0 0.0 2.0010905943739337E-4 0.0 8 0.0 0.0 0.0 2.0010905943739337E-4 0.0 9 0.0 0.0 0.0 2.0010905943739337E-4 0.0 10 0.0 0.0 0.0 2.0010905943739337E-4 0.0 11 0.0 0.0 0.0 7.003817080308768E-4 0.0 12 0.0 0.0 0.0 0.001300708886343057 0.0 13 0.0 0.0 0.0 0.0017009270052178438 0.0 14 0.0 0.0 0.0 0.002201199653811327 0.0 15 0.0 0.0 0.0 0.0031016904212795974 0.0 16 0.0 0.0 0.0 0.005703108193965712 0.0 17 0.0 0.0 0.0 0.0078042533180583415 0.0 18 0.0 0.0 0.0 0.009505180323276186 0.0 19 0.0 0.0 0.0 0.01150627091765012 1.0005452971869668E-4 20 0.0 0.0 0.0 0.01420774322005493 1.0005452971869668E-4 21 0.0 0.0 0.0 0.018410033468240192 1.0005452971869668E-4 22 0.0 0.0 0.0 0.03241766762885773 1.0005452971869668E-4 23 0.0 0.0 0.0 0.05252862810231576 1.0005452971869668E-4 24 0.0 0.0 0.0 0.07824264224002081 1.0005452971869668E-4 25 0.0 0.0 0.0 0.08564667743920437 1.0005452971869668E-4 26 0.0 0.0 0.0 0.09505180323276186 1.0005452971869668E-4 27 0.0 0.0 0.0 0.1482808130431085 1.0005452971869668E-4 28 0.0 0.0 0.0 0.24293239815699555 1.0005452971869668E-4 29 0.0 0.0 0.0 0.3540929806744676 1.0005452971869668E-4 30 0.0 0.0 0.0 0.572011746401789 1.0005452971869668E-4 31 0.0 0.0 0.0 0.8287516696599647 1.0005452971869668E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2640 0.0 30.973486 1 ATTGGAC 425 0.0 25.682354 3 TATACCG 60 1.3371155E-6 24.666668 5 GCGTTAT 40 0.0019310114 23.125002 1 GTATTGG 450 0.0 23.022223 1 TTGGACC 650 0.0 20.492308 4 GGACCCT 660 0.0 19.901516 6 CGTCTGT 295 0.0 18.813559 34 TATTGGA 605 0.0 18.652893 2 GTATCAA 4380 0.0 18.542236 2 ACGGACC 70 1.2189952E-4 18.5 8 TCTACGC 50 0.0070342566 18.499998 3 GACCCTC 655 0.0 18.35878 7 TGGACCC 690 0.0 18.231884 5 GACCGTG 75 2.066926E-4 17.266666 7 AGGCGGG 75 2.066926E-4 17.266666 29 GTTCGCT 75 2.066926E-4 17.266666 37 TACTATA 140 1.8681021E-9 17.178572 2 GTTCTAA 100 5.876247E-6 16.65 1 TATAGAC 90 4.4450237E-5 16.444445 3 >>END_MODULE