##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088117_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 974434 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.101309067622847 31.0 31.0 33.0 30.0 34.0 2 31.300119864454647 31.0 31.0 34.0 30.0 34.0 3 31.36766061118557 31.0 31.0 34.0 28.0 34.0 4 35.13192786786996 35.0 35.0 37.0 32.0 37.0 5 34.97988575932285 35.0 35.0 37.0 32.0 37.0 6 35.04430058885466 36.0 35.0 37.0 32.0 37.0 7 34.8913389721623 36.0 35.0 37.0 32.0 37.0 8 34.965259832887604 36.0 35.0 37.0 32.0 37.0 9 36.366626164522174 38.0 35.0 39.0 32.0 39.0 10 36.14630441877028 38.0 35.0 39.0 32.0 39.0 11 36.29018076134454 38.0 35.0 39.0 32.0 39.0 12 36.11402208872022 38.0 35.0 39.0 31.0 39.0 13 36.16535342568096 38.0 35.0 39.0 32.0 39.0 14 37.00779529449917 39.0 36.0 40.0 31.0 41.0 15 37.04909516704056 39.0 36.0 40.0 31.0 41.0 16 36.892229745678 38.0 36.0 40.0 31.0 41.0 17 36.91611848519243 38.0 36.0 40.0 31.0 41.0 18 36.8976749579756 38.0 36.0 40.0 31.0 41.0 19 36.934897591832794 39.0 36.0 40.0 31.0 41.0 20 36.870688009654835 39.0 36.0 40.0 31.0 41.0 21 36.786765445376496 39.0 36.0 40.0 30.0 41.0 22 36.666847626416974 38.0 35.0 40.0 30.0 41.0 23 36.41774814918199 38.0 35.0 40.0 30.0 41.0 24 36.26683592731781 38.0 35.0 40.0 29.0 41.0 25 36.14823066518615 38.0 34.0 40.0 29.0 41.0 26 36.250369958355314 38.0 35.0 40.0 30.0 41.0 27 36.12135249796292 38.0 35.0 40.0 29.0 41.0 28 36.02828616407063 38.0 35.0 40.0 29.0 41.0 29 35.93476931223664 38.0 34.0 40.0 29.0 41.0 30 35.708467684830374 38.0 34.0 40.0 27.0 41.0 31 35.51791193657036 38.0 34.0 40.0 27.0 41.0 32 35.35927112559701 38.0 34.0 40.0 27.0 41.0 33 35.14065293288206 38.0 34.0 40.0 26.0 41.0 34 34.98067083045132 38.0 33.0 40.0 25.0 41.0 35 34.74305083771708 38.0 33.0 40.0 25.0 41.0 36 34.668085267960684 37.0 33.0 40.0 25.0 41.0 37 34.489125995193106 37.0 33.0 40.0 24.0 41.0 38 34.36923075344251 37.0 33.0 40.0 24.0 41.0 39 34.24553330446187 37.0 33.0 40.0 23.0 41.0 40 34.03213557819206 37.0 33.0 40.0 22.0 41.0 41 33.86043795680364 37.0 33.0 40.0 21.0 41.0 42 33.64779246208568 37.0 32.0 40.0 20.0 41.0 43 33.30390462565961 37.0 31.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 6.0 12 1.0 13 3.0 14 7.0 15 20.0 16 26.0 17 80.0 18 164.0 19 355.0 20 691.0 21 1345.0 22 2189.0 23 3651.0 24 5757.0 25 8468.0 26 12027.0 27 16261.0 28 21398.0 29 27494.0 30 33983.0 31 41626.0 32 49842.0 33 59851.0 34 71424.0 35 86579.0 36 109040.0 37 141394.0 38 174656.0 39 106095.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.36473275768292 24.9676222299304 14.863294999969213 21.804350012417466 2 19.603790508130874 24.378664948062156 33.74071512283028 22.27682942097669 3 21.324584322796618 25.93895533201838 31.76972478382322 20.966735561361773 4 15.04114183207893 17.261815577042672 34.1496704753734 33.547372115505006 5 11.556452258439258 41.34328235673222 33.91086517917068 13.189400205657847 6 32.26529451969041 37.47652483390358 14.536746459996264 15.721434186409752 7 24.911692326006687 35.27350236137081 21.00460369814682 18.810201614475687 8 27.96577295127223 34.86403389044307 19.519639093052994 17.650554065231713 9 25.441435746289642 13.902737383958277 22.606867165965063 38.04895970378702 10 16.462685004833574 29.0158184135611 33.016397211098955 21.505099370506368 11 32.816691535804374 22.18446811174487 23.565680179468288 21.433160172982472 12 19.56212529529963 28.1565503666744 31.258556249063556 21.022768088962412 13 31.05320627153814 21.13288329430213 27.834004150101492 19.97990628405823 14 20.59482735618831 22.66413117768879 28.036583288349952 28.704458177772946 15 23.57347957891453 29.683795926661016 25.410751266889292 21.331973227535165 16 22.080612950697535 28.48566449857045 26.341855887622966 23.091866663109045 17 20.199828823706888 27.685097194884417 27.69402545477682 24.421048526631868 18 21.029849122670186 26.431754228608607 31.221406478016984 21.316990170704226 19 20.606218584326903 25.397615436242987 32.32225066038336 21.67391531904675 20 24.05796595767389 24.573239439510527 31.305044774710243 20.06374982810534 21 23.792478505470868 25.02129441296178 30.066171746880755 21.120055334686597 22 22.2959174248846 24.95458902296102 30.82158463272012 21.927908919434255 23 21.377743387443378 26.688723915626916 31.54333695252834 20.390195744401364 24 20.63177187988104 25.863013811094444 30.30251407483729 23.202700234187233 25 21.341209358458347 26.616887341779943 31.01297779018384 21.028925509577867 26 22.450263434978666 25.752282863693182 30.135237481450773 21.662216219877386 27 21.684998676154567 26.94928543133758 29.848712175478276 21.517003717029578 28 21.446090756274923 26.662554878011235 29.98776725771063 21.90358710800321 29 20.59698245340372 26.192333190344343 30.900707487628715 22.30997686862322 30 20.079861745382445 26.617195212810717 32.26508927233655 21.037853769470278 31 21.141093188456068 26.00412136686528 31.44132901766564 21.413456427013013 32 21.8574064533873 26.37469546423873 29.919522512556007 21.848375569817964 33 22.82237688750598 26.214602528236902 29.38988171594998 21.57313886830714 34 21.36614691195094 28.23413386642913 29.78539336681602 20.614325854803916 35 20.45515653189441 28.700661101726745 30.021325200064858 20.822857166313984 36 21.16007856868705 25.853469809140485 31.580691970928765 21.4057596512437 37 20.89797769782253 26.27053243216062 31.15747192729318 21.674017942723673 38 21.303443845350223 25.763571468154844 31.625230646713888 21.30775403978104 39 22.16712471034467 25.403978104212293 31.537692650297505 20.89120453514553 40 20.831682802529468 25.962250906680183 30.84754842298196 22.358517867808388 41 21.243203746995693 25.693171625784817 30.84128837868958 22.222336248529917 42 19.63468023488507 26.88175905192142 30.996455378199038 22.48710533499447 43 20.010898634489354 26.583739894133412 30.77006754690415 22.63529392447308 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 69.0 1 104.0 2 139.0 3 228.5 4 318.0 5 318.0 6 675.5 7 1033.0 8 1239.0 9 1445.0 10 2387.5 11 3330.0 12 3330.0 13 7001.0 14 10672.0 15 17357.5 16 24043.0 17 21798.0 18 19553.0 19 19553.0 20 22153.0 21 24753.0 22 20302.0 23 15851.0 24 17864.5 25 19878.0 26 19878.0 27 22145.5 28 24413.0 29 25657.0 30 26901.0 31 29150.0 32 31399.0 33 31399.0 34 34290.0 35 37181.0 36 40135.5 37 43090.0 38 45325.0 39 47560.0 40 47560.0 41 50041.0 42 52522.0 43 58242.0 44 63962.0 45 77322.0 46 90682.0 47 90682.0 48 92351.5 49 94021.0 50 85976.0 51 77931.0 52 72851.5 53 67772.0 54 67772.0 55 59835.5 56 51899.0 57 45119.0 58 38339.0 59 34454.0 60 30569.0 61 30569.0 62 26998.0 63 23427.0 64 20391.0 65 17355.0 66 14728.5 67 12102.0 68 12102.0 69 10219.0 70 8336.0 71 6986.5 72 5637.0 73 4543.5 74 3450.0 75 3450.0 76 2717.5 77 1985.0 78 1567.0 79 1149.0 80 917.5 81 686.0 82 686.0 83 532.5 84 379.0 85 310.5 86 242.0 87 201.0 88 160.0 89 160.0 90 143.5 91 127.0 92 85.5 93 44.0 94 34.0 95 24.0 96 24.0 97 14.0 98 4.0 99 3.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 974434.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.00240299484866 #Duplication Level Percentage of deduplicated Percentage of total 1 82.58149545753238 47.07343683987525 2 10.394011722569426 11.84967289886167 3 3.080698350906439 5.268216267118035 4 1.2318296804795583 2.8086900747084576 5 0.6354923049531225 1.8112294233531574 6 0.3873139464994058 1.324669539833063 7 0.2723144835308666 1.0865805952092376 8 0.1924831558618723 0.8777601936126969 9 0.15967489464936876 0.8191667423666991 >10 0.9321240633906429 10.074121750535733 >50 0.0813442560570442 3.14217866754022 >100 0.04310220570272649 4.795740899551335 >500 0.0041479109098790795 1.6940475714381003 >1k 0.0034265350994653267 4.141621976946306 >5k 1.8034395260343823E-4 0.7924881806066092 >10k+ 3.6068790520687647E-4 2.4403783784434165 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 12226 1.2546770740758224 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 11513 1.1815063924288356 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 7709 0.7911259254090067 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4687 0.48099717374393747 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4497 0.46149867512833087 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 3124 0.3205963667113422 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3061 0.31413107506511473 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 2856 0.2930932212956444 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 2533 0.25994577364911325 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2514 0.2579959237875526 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 2196 0.22536159452564258 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 1920 0.19703745969455091 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 1801 0.1848252421405657 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1615 0.1657372382326561 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1373 0.14090230841698873 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCATGTACTCTGCGTT 1286 0.1319740485245794 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1277 0.1310504354322612 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1258 0.12910058557070053 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1169 0.11996707832444271 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1096 0.1124755499089728 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1024 0.10508664517042714 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1001 0.10272630060116951 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 980 0.10057120338576035 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 2.052473538484905E-4 0.0 12 0.0 0.0 0.0 4.10494707696981E-4 0.0 13 0.0 0.0 0.0 4.10494707696981E-4 0.0 14 0.0 0.0 0.0 4.10494707696981E-4 0.0 15 0.0 0.0 0.0 0.0010262367692424525 0.0 16 0.0 0.0 0.0 0.001641978830787924 0.0 17 0.0 0.0 0.0 0.003283957661575848 0.0 18 0.0 0.0 0.0 0.003591828692348584 0.0 19 0.0 0.0 0.0 0.004207570753894056 0.0 20 0.0 0.0 0.0 0.005233807523136508 0.0 21 0.0 0.0 0.0 0.007183657384697168 0.0 22 0.0 0.0 0.0 0.015598798892485279 0.0 23 0.0 0.0 0.0 0.023706069369500652 0.0 24 0.0 0.0 0.0 0.03499467383116763 0.0 25 0.0 0.0 0.0 0.039612739292758666 0.0 26 0.0 0.0 0.0 0.045462288877440644 0.0 27 0.0 0.0 0.0 0.08199631786247195 0.0 28 0.0 0.0 0.0 0.14552037387857977 0.0 29 0.0 0.0 0.0 0.2224881315717637 0.0 30 0.0 0.0 0.0 0.3599012349733281 0.0 31 1.0262367692424525E-4 0.0 0.0 0.5433923693138786 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGGGT 35 8.868422E-4 26.428572 14 GGTATCA 2655 0.0 26.199623 1 TAGGGTG 95 1.675453E-7 19.473684 5 GTATTGG 295 0.0 19.440678 1 ACCGCAA 50 0.007034132 18.5 8 CCGCTGA 60 9.2354394E-4 18.5 35 ACGGGTG 50 0.007034132 18.5 15 ATTGGAC 290 0.0 18.5 3 AGTACCG 80 1.6162587E-5 18.5 5 TATACCG 95 3.605248E-6 17.526316 5 CGTGCAT 65 0.001579701 17.076923 3 CGTCTGT 195 0.0 17.076923 34 ACGAGAC 65 0.001579701 17.076923 19 GTATCAA 4130 0.0 16.88741 2 TAGTACC 80 3.3819038E-4 16.1875 4 ACAACGC 70 0.0025921136 15.857143 18 AAAGCCG 70 0.0025921136 15.857143 19 ATAAGAC 85 5.363111E-4 15.235293 3 GTATACT 85 5.363111E-4 15.235293 4 TATTGGA 385 0.0 14.896104 2 >>END_MODULE