##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088116_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2521586 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.26706564836575 31.0 31.0 33.0 30.0 34.0 2 31.46630731610978 31.0 31.0 34.0 30.0 34.0 3 31.55106270418697 31.0 31.0 34.0 30.0 34.0 4 35.321924772742236 37.0 35.0 37.0 33.0 37.0 5 35.16525789721231 37.0 35.0 37.0 32.0 37.0 6 35.19166072463918 37.0 35.0 37.0 32.0 37.0 7 35.05332992806908 37.0 35.0 37.0 32.0 37.0 8 35.071987233431656 37.0 35.0 37.0 32.0 37.0 9 36.562346475591156 38.0 35.0 39.0 32.0 39.0 10 36.36940639740227 38.0 35.0 39.0 32.0 39.0 11 36.47341990318792 38.0 35.0 39.0 32.0 39.0 12 36.3388220746784 38.0 35.0 39.0 32.0 39.0 13 36.37138650040094 38.0 35.0 39.0 32.0 39.0 14 37.31660312200337 39.0 36.0 40.0 32.0 41.0 15 37.33277905254867 39.0 36.0 41.0 32.0 41.0 16 37.19132641123483 39.0 36.0 40.0 31.0 41.0 17 37.19157387453769 39.0 36.0 40.0 31.0 41.0 18 37.16471141575183 39.0 36.0 40.0 31.0 41.0 19 37.19706565629727 39.0 36.0 40.0 31.0 41.0 20 37.10540865947067 39.0 36.0 40.0 31.0 41.0 21 37.00815161568949 39.0 36.0 40.0 31.0 41.0 22 36.91995712222387 39.0 36.0 40.0 31.0 41.0 23 36.695397658457814 39.0 35.0 40.0 30.0 41.0 24 36.551174935140025 38.0 35.0 40.0 30.0 41.0 25 36.44981967698107 38.0 35.0 40.0 30.0 41.0 26 36.52817314182423 38.0 35.0 40.0 30.0 41.0 27 36.418084887844394 38.0 35.0 40.0 30.0 41.0 28 36.31269843661886 38.0 35.0 40.0 30.0 41.0 29 36.21741237459282 38.0 35.0 40.0 30.0 41.0 30 36.056974856300755 38.0 35.0 40.0 29.0 41.0 31 35.92927268790356 38.0 35.0 40.0 29.0 41.0 32 35.78583756413622 38.0 34.0 40.0 28.0 41.0 33 35.59342175916269 38.0 34.0 40.0 27.0 41.0 34 35.459773333132404 38.0 34.0 40.0 27.0 41.0 35 35.26412305588626 38.0 34.0 40.0 26.0 41.0 36 35.182405041906165 38.0 34.0 40.0 25.0 41.0 37 35.04208859027612 38.0 33.0 40.0 25.0 41.0 38 34.944113744286334 38.0 33.0 40.0 25.0 41.0 39 34.87383139024408 38.0 33.0 40.0 24.0 41.0 40 34.70346004459098 38.0 33.0 40.0 24.0 41.0 41 34.586824324056366 38.0 33.0 40.0 24.0 41.0 42 34.42565274394766 38.0 33.0 40.0 23.0 41.0 43 34.09837816358435 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 5.0 13 7.0 14 21.0 15 18.0 16 63.0 17 146.0 18 292.0 19 640.0 20 1318.0 21 2531.0 22 4632.0 23 7708.0 24 12430.0 25 18298.0 26 26530.0 27 36929.0 28 49723.0 29 64165.0 30 80699.0 31 99231.0 32 120013.0 33 145207.0 34 174976.0 35 212106.0 36 264725.0 37 343937.0 38 460452.0 39 394780.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.781232922454365 23.118981466426288 13.872301004209255 23.227484606910096 2 18.81415109379573 22.814926796071997 34.96212304478213 23.40879906535014 3 20.20914614849543 25.71195271547351 31.181327942017447 22.89757319401361 4 14.290133273265319 16.35363616390637 35.20645339877363 34.14977716405468 5 12.146244466776068 39.996771872940286 34.51145429900071 13.345529361282937 6 32.62982107292791 36.791051346255884 15.129763569436061 15.44936401138014 7 26.09056363732984 33.79349346006838 21.626389105903982 18.48955379669779 8 27.344655308206818 34.79881312792822 19.808723557316704 18.04780800654826 9 25.711119906281205 14.080701590189667 22.140827241267996 38.067351262261134 10 16.43263406443405 27.81483558363665 33.621617505807855 22.130912846121447 11 33.30098596676853 22.10136794858474 23.439771635787952 21.157874448858774 12 19.868606504001846 27.15878022799936 31.304623360059896 21.667989907938892 13 30.37727049563251 20.89657065037639 27.602746842661723 21.12341201132938 14 21.053535354336518 22.181079685562974 27.332083855161 29.433301104939506 15 23.776583467706438 29.061511286944008 25.01397929715663 22.147925948192924 16 22.924342060909282 28.09985461530957 25.776792859731927 23.199010464049213 17 20.8003613598743 27.224968729997705 27.28588277377809 24.6887871363499 18 21.725057166402415 26.450971729697102 29.903322750046996 21.920648353853487 19 21.434684361350357 25.33219172378019 30.678668108087532 22.554455806781924 20 24.410985784343666 24.669632524926772 29.883414644592726 21.035967046136836 21 24.050022485848192 25.173601059016033 28.863976878044216 21.91239957709156 22 22.74635883923848 24.978961653499027 29.860254617530398 22.4144248897321 23 21.92195705401283 26.28516338526626 30.52566916218602 21.267210398534893 24 21.375197990471076 25.671383010533848 29.267135842283388 23.68628315671169 25 22.17572591218384 26.356507372740808 29.80239420745515 21.665372507620205 26 23.081901628578205 25.783217387786895 28.999486830907216 22.135394152727688 27 22.267096977854415 26.62602029040453 28.770305672699642 22.336577059041414 28 22.12643153951521 26.067720870912197 29.188415544819808 22.617432044752785 29 21.19761134460613 26.076683484124676 29.919146124700884 22.80655904656831 30 20.9645834010817 26.2419762800079 30.8624809941045 21.930959324805897 31 21.92957130948538 25.71976525884899 30.23541532987572 22.115248101789906 32 22.44135238695012 25.819345443700907 28.997067718491458 22.742234450857516 33 23.161058159428233 25.715521897726273 28.95439616178072 22.169023781064777 34 22.196466826830417 27.321415965983313 28.84351356646174 21.638603640724526 35 21.474064338872438 27.79119966560728 29.099701537048507 21.63503445847177 36 21.837407092203083 25.523618865269714 30.317109945883264 22.321864096643935 37 21.98299007053497 25.508985218033413 30.023643849545483 22.48438086188613 38 21.88138734907316 25.2500608743862 30.739978727673773 22.128573048866865 39 22.683184313364684 24.79808342844543 30.621283588979313 21.89744866921057 40 21.647645569098177 25.337664469901082 30.030227007922793 22.984462953077944 41 21.899471205820465 25.20227348977985 30.117830603437678 22.780424700962012 42 20.603778732908573 26.336995843092403 30.155544962575142 22.903680461423882 43 20.933134939676854 25.911549318563793 29.936198884352944 23.219116857406412 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 180.0 1 249.0 2 318.0 3 620.5 4 923.0 5 923.0 6 1784.5 7 2646.0 8 2942.0 9 3238.0 10 5363.0 11 7488.0 12 7488.0 13 14438.5 14 21389.0 15 32514.5 16 43640.0 17 41760.5 18 39881.0 19 39881.0 20 45584.5 21 51288.0 22 43958.0 23 36628.0 24 40895.5 25 45163.0 26 45163.0 27 51178.5 28 57194.0 29 62379.0 30 67564.0 31 73937.5 32 80311.0 33 80311.0 34 89206.0 35 98101.0 36 106989.0 37 115877.0 38 122323.0 39 128769.0 40 128769.0 41 135401.5 42 142034.0 43 155131.0 44 168228.0 45 197661.5 46 227095.0 47 227095.0 48 228399.5 49 229704.0 50 212833.5 51 195963.0 52 186884.0 53 177805.0 54 177805.0 55 160745.0 56 143685.0 57 127336.5 58 110988.0 59 101828.5 60 92669.0 61 92669.0 62 82880.5 63 73092.0 64 63916.5 65 54741.0 66 45905.0 67 37069.0 68 37069.0 69 31361.0 70 25653.0 71 21782.5 72 17912.0 73 14313.5 74 10715.0 75 10715.0 76 8183.0 77 5651.0 78 4404.0 79 3157.0 80 2550.0 81 1943.0 82 1943.0 83 1529.0 84 1115.0 85 860.0 86 605.0 87 532.5 88 460.0 89 460.0 90 465.5 91 471.0 92 293.0 93 115.0 94 93.0 95 71.0 96 71.0 97 48.5 98 26.0 99 23.5 100 21.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2521586.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.78594538710807 #Duplication Level Percentage of deduplicated Percentage of total 1 77.64138517341735 38.65449762023178 2 12.498937594456237 12.445428489489403 3 4.195725724811461 6.266645153842434 4 1.85353737380351 3.6912044186058104 5 1.0020953709537037 2.4945132705487447 6 0.5872524618698719 1.7542151397058927 7 0.390130299050387 1.3596104033665093 8 0.25380363487480895 1.0108683123941404 9 0.18960722558942247 0.849579748037646 >10 1.182648199695152 11.236790083047099 >50 0.12059222442538059 4.133118463073526 >100 0.07430587110140473 6.812536068848477 >500 0.005827646035582235 1.9630604608011242 >1k 0.0034327230072601135 3.2948987350443626 >5k 3.9915383805350156E-4 1.2977772357169137 >10k+ 3.193230704428012E-4 2.735256397246002 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 21649 0.8585469621103544 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 20028 0.7942620239801459 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 15553 0.6167943508569607 No Hit GTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11591 0.4596710165744892 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8728 0.3461313633562369 No Hit ACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTAGGAAT 6882 0.2729234695941364 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6448 0.25571207961973136 No Hit GGTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACT 5578 0.22120998450974902 No Hit GAGTACATGGGCTTGCTACACGATTCAGACTTAGGAATGTTCG 5017 0.1989620818008983 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4969 0.19705851793276136 No Hit TATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTTA 4695 0.18619234085214623 No Hit GTATCAACGCAGAGTACATGGGCTTGCTACACGATTCAGACTT 3967 0.15732162218540235 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCATGT 3605 0.14296557801320278 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3286 0.13031480980620927 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3171 0.12575418803879782 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2715 0.1076703312914967 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 3.965758058618663E-5 0.0 5 0.0 0.0 0.0 3.965758058618663E-5 0.0 6 0.0 0.0 0.0 3.965758058618663E-5 0.0 7 0.0 0.0 0.0 7.931516117237325E-5 0.0 8 3.965758058618663E-5 0.0 0.0 7.931516117237325E-5 0.0 9 3.965758058618663E-5 0.0 0.0 1.1897274175855989E-4 0.0 10 3.965758058618663E-5 0.0 0.0 1.1897274175855989E-4 0.0 11 3.965758058618663E-5 0.0 0.0 2.3794548351711977E-4 0.0 12 3.965758058618663E-5 0.0 0.0 5.552061282066128E-4 0.0 13 3.965758058618663E-5 0.0 0.0 6.741788699651727E-4 0.0 14 7.931516117237325E-5 0.0 0.0 8.328091923099192E-4 0.0 15 7.931516117237325E-5 0.0 0.0 0.001189727417585599 0.0 16 7.931516117237325E-5 0.0 0.0 0.001824248706964585 0.0 17 7.931516117237325E-5 0.0 0.0 0.0028553458022054375 0.0 18 7.931516117237325E-5 0.0 0.0 0.0033312367692396767 0.0 19 7.931516117237325E-5 0.0 0.0 0.0039261004780324765 0.0 20 7.931516117237325E-5 0.0 0.0 0.0052744582179628215 0.0 21 7.931516117237325E-5 0.0 0.0 0.0074952827307892735 0.0 22 7.931516117237325E-5 0.0 0.0 0.013642207721648201 0.0 23 7.931516117237325E-5 0.0 0.0 0.021732354161230275 0.0 24 7.931516117237325E-5 0.0 0.0 0.03450209510998237 3.965758058618663E-5 25 7.931516117237325E-5 0.0 0.0 0.039459292683255695 3.965758058618663E-5 26 7.931516117237325E-5 0.0 0.0 0.046359711705252174 3.965758058618663E-5 27 7.931516117237325E-5 0.0 0.0 0.08316194648923336 3.965758058618663E-5 28 7.931516117237325E-5 0.0 0.0 0.15113503961395724 3.965758058618663E-5 29 7.931516117237325E-5 0.0 0.0 0.23731096222774078 3.965758058618663E-5 30 7.931516117237325E-5 0.0 0.0 0.38749421990762956 3.965758058618663E-5 31 7.931516117237325E-5 0.0 0.0 0.6087438619979648 3.965758058618663E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5180 0.0 30.357143 1 GTATCAA 8165 0.0 19.236374 2 TAGGACG 155 2.1827873E-11 17.903225 4 TATATCG 125 8.592906E-9 17.76 5 CGAACGA 200 0.0 17.575 16 GCGCGAC 95 3.6098427E-6 17.526316 25 GTATTGG 835 0.0 17.05988 1 ATTGGAC 825 0.0 16.818182 3 CGTAATA 70 0.0025936444 15.857143 2 ACGGACC 320 0.0 15.609376 8 CGAATTA 180 2.0190782E-10 15.416666 15 ACGAACG 230 0.0 15.282609 15 GTATTAG 440 0.0 15.136364 1 TGGACCC 1235 0.0 15.129556 5 AAGACGG 380 0.0 15.092106 5 GTTACGA 75 0.0041062133 14.8 25 ACGTAGA 75 0.0041062133 14.8 7 TTGGACC 1325 0.0 14.6603775 4 GGACCCT 1285 0.0 14.252918 6 TAGACTG 340 0.0 14.147059 5 >>END_MODULE