##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088112_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3151630 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.49171508076773 31.0 31.0 34.0 30.0 34.0 2 31.703843408014265 31.0 31.0 34.0 30.0 34.0 3 31.779855820638844 31.0 31.0 34.0 30.0 34.0 4 35.48713840139864 37.0 35.0 37.0 33.0 37.0 5 35.36622097137037 37.0 35.0 37.0 33.0 37.0 6 35.40467631035369 37.0 35.0 37.0 33.0 37.0 7 35.285674079761904 37.0 35.0 37.0 32.0 37.0 8 35.311043491780445 37.0 35.0 37.0 32.0 37.0 9 36.85793287917681 39.0 37.0 39.0 33.0 39.0 10 36.664896260030524 39.0 35.0 39.0 32.0 39.0 11 36.726923845756005 39.0 35.0 39.0 32.0 39.0 12 36.593600771664185 38.0 35.0 39.0 32.0 39.0 13 36.62970780199452 38.0 35.0 39.0 32.0 39.0 14 37.626420614094926 39.0 36.0 41.0 32.0 41.0 15 37.621803320821286 39.0 36.0 41.0 32.0 41.0 16 37.50253138851959 39.0 36.0 41.0 32.0 41.0 17 37.48515276222145 39.0 36.0 41.0 32.0 41.0 18 37.45896536078156 39.0 36.0 41.0 32.0 41.0 19 37.49795217078147 39.0 36.0 41.0 32.0 41.0 20 37.40714423964742 39.0 36.0 41.0 32.0 41.0 21 37.31444807924788 39.0 36.0 41.0 31.0 41.0 22 37.19434736945644 39.0 36.0 40.0 31.0 41.0 23 36.98439093421499 39.0 36.0 40.0 31.0 41.0 24 36.84647626783601 39.0 36.0 40.0 30.0 41.0 25 36.68236785409455 39.0 35.0 40.0 30.0 41.0 26 36.87696271453184 39.0 36.0 40.0 31.0 41.0 27 36.80610985426589 39.0 36.0 40.0 30.0 41.0 28 36.73604896513867 39.0 35.0 40.0 30.0 41.0 29 36.658722946538774 39.0 35.0 40.0 30.0 41.0 30 36.43787373517831 39.0 35.0 40.0 30.0 41.0 31 36.25974273629836 38.0 35.0 40.0 30.0 41.0 32 36.107877193706116 38.0 35.0 40.0 29.0 41.0 33 35.95437472038279 38.0 35.0 40.0 29.0 41.0 34 35.83202089077715 38.0 35.0 40.0 28.0 41.0 35 35.64214581026326 38.0 34.0 40.0 27.0 41.0 36 35.55098758420246 38.0 34.0 40.0 27.0 41.0 37 35.391393025196486 38.0 34.0 40.0 26.0 41.0 38 35.31756646560669 38.0 34.0 40.0 26.0 41.0 39 35.23497872529453 38.0 34.0 40.0 25.0 41.0 40 35.0725294530132 38.0 34.0 40.0 25.0 41.0 41 34.932498421451754 38.0 34.0 40.0 24.0 41.0 42 34.754845270542546 38.0 33.0 40.0 24.0 41.0 43 34.42950473247177 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 3.0 13 7.0 14 9.0 15 27.0 16 49.0 17 125.0 18 252.0 19 607.0 20 1278.0 21 2632.0 22 4677.0 23 8092.0 24 12864.0 25 19701.0 26 28108.0 27 38996.0 28 53248.0 29 69979.0 30 88521.0 31 110213.0 32 135571.0 33 167589.0 34 205455.0 35 254767.0 36 327302.0 37 441669.0 38 613763.0 39 566124.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.56942915253377 22.558580797872846 14.359141142837197 23.512848906756187 2 18.818516132921694 23.561300025700987 35.21076395389053 22.40941988748679 3 19.219292873846232 25.286470810342585 32.740772235319504 22.753464080491682 4 13.922319561623667 17.080780421559638 36.98184748844249 32.015052528374206 5 12.143652649581329 38.96015712504323 35.73344586769386 13.16274435768158 6 31.713335639018542 38.68138074583628 13.867966734673804 15.737316880471376 7 25.647744183168708 33.31177834961591 22.233352265335714 18.807125201879664 8 26.239691841999218 35.81251606311655 19.211614307517063 18.736177787367172 9 24.526736958335846 14.694618340350866 21.846885579842812 38.93175912147048 10 15.81483232486047 28.151496209897736 34.42526565618426 21.608405809057533 11 33.24774799072226 22.76875775392416 23.528872361286066 20.454621894067515 12 20.551809698473487 27.471911360153317 31.159749082220944 20.816529859152247 13 30.38192935084385 21.67116698343397 26.634820711822137 21.312082953900045 14 20.345979699393645 22.832946760882464 27.79428422752671 29.02678931219718 15 22.32625657199608 29.93965027620628 25.646824024393727 22.087269127403914 16 21.926399989846523 28.8371731453248 26.484136780015422 22.752290084813257 17 21.402480621138903 27.42945713805237 27.28810171244721 23.879960528361515 18 22.37543747203828 26.4586896304452 29.708404857169146 21.457468040347376 19 22.510002760476326 25.298686711320812 30.456779507746784 21.73453102045608 20 23.22245948921669 25.252773961410448 30.426033512817174 21.098733036555686 21 22.377690274556343 25.910973052039736 30.714170127838607 20.99716654556531 22 21.27791016077395 26.218274353271166 30.347280613523797 22.15653487243109 23 22.151267756684636 26.381650130250062 31.17358319345862 20.293498919606677 24 22.147714040036426 26.435907768361133 28.871758423418992 22.54461976818345 25 22.019113918829305 26.57269412970431 29.973505773203073 21.434686178263313 26 21.81525115575115 27.188565916684382 29.79417000092016 21.202012926644308 27 21.043682158121353 27.118887686689106 29.458312048051326 22.37911810713821 28 21.263536646116453 26.757043180830237 29.967762713262662 22.011657459790648 29 21.80049688573849 26.472714119360457 29.284402039579522 22.442386955321535 30 21.80887350355213 26.686603440124635 30.396302865501347 21.108220190821893 31 22.358715966023933 26.516881740559644 30.316947103562285 20.80745518985414 32 21.67687831376145 26.316604423742636 29.71541710162678 22.29110016086914 33 21.583339414842477 26.363151765911606 30.324879506794893 21.728629312451016 34 20.898138423609367 26.755520159409574 30.966261902571052 21.380079514410003 35 20.70147828266643 28.434429168398573 29.601698168884038 21.26239438005096 36 22.458473869077274 26.487658767050696 29.56546295091746 21.48840441295457 37 21.590002633557873 26.917626751871254 29.764217246313812 21.72815336825706 38 21.56024025662911 25.66449741879599 30.749739023933646 22.025523300641257 39 21.023216557781215 25.734841970662796 31.373162458791164 21.868779012764826 40 20.108324898544563 26.28046439461485 30.94738278287743 22.663827923963158 41 21.307418700799268 25.217490631831787 31.13135107864819 22.34373958872076 42 20.18885465616205 27.182442101388805 30.471248211243072 22.157455031206077 43 20.696369814984628 26.73943324565384 29.8219334122343 22.742263527127232 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 164.0 1 301.5 2 439.0 3 790.0 4 1141.0 5 1141.0 6 2078.0 7 3015.0 8 3510.5 9 4006.0 10 6540.0 11 9074.0 12 9074.0 13 17961.0 14 26848.0 15 43104.5 16 59361.0 17 56191.0 18 53021.0 19 53021.0 20 59840.0 21 66659.0 22 57007.0 23 47355.0 24 54556.0 25 61757.0 26 61757.0 27 69570.0 28 77383.0 29 84795.0 30 92207.0 31 102931.0 32 113655.0 33 113655.0 34 127596.5 35 141538.0 36 154219.0 37 166900.0 38 176480.0 39 186060.0 40 186060.0 41 190121.0 42 194182.0 43 201052.0 44 207922.0 45 213839.5 46 219757.0 47 219757.0 48 263341.5 49 306926.0 50 282128.5 51 257331.0 52 236217.5 53 215104.0 54 215104.0 55 191417.5 56 167731.0 57 144944.5 58 122158.0 59 110811.5 60 99465.0 61 99465.0 62 88811.0 63 78157.0 64 68050.0 65 57943.0 66 49049.5 67 40156.0 68 40156.0 69 34202.5 70 28249.0 71 23298.0 72 18347.0 73 15037.5 74 11728.0 75 11728.0 76 9388.0 77 7048.0 78 5562.5 79 4077.0 80 3145.5 81 2214.0 82 2214.0 83 1687.5 84 1161.0 85 903.5 86 646.0 87 504.0 88 362.0 89 362.0 90 309.5 91 257.0 92 163.5 93 70.0 94 53.5 95 37.0 96 37.0 97 24.5 98 12.0 99 9.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3151630.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.45001410454892 #Duplication Level Percentage of deduplicated Percentage of total 1 74.64746111329904 34.67375621581508 2 13.737169349299286 12.761834200630581 3 5.008583533229088 6.979463272869078 4 2.3304275947117423 4.329935785759618 5 1.2117451399845887 2.8142789421701377 6 0.7092995209258898 1.9768183650814422 7 0.4487750824740551 1.4591926237482977 8 0.3130542985130946 1.1633101265138328 9 0.22390630652542326 0.9360405986583028 >10 1.1477082553538522 10.052002105510432 >50 0.1189983077667232 3.8543392169156343 >100 0.08905943524900807 8.20714566048629 >500 0.00800005609995866 2.556277334428422 >1k 0.005128241089596729 3.9920930696806245 >5k 4.102592871677384E-4 1.3355465230887429 >10k+ 2.735061914451589E-4 2.9079659586434987 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 29779 0.944876143455926 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 28222 0.8954731361232124 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 22406 0.7109337073197044 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11151 0.3538169137874687 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7817 0.2480303842773422 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7580 0.2405104660128251 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7203 0.22854840193804477 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6723 0.21331818773142786 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6509 0.20652805056431117 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6218 0.19729473320154967 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3643 0.11559097990563613 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3479 0.11038732338504202 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3394 0.10769030628595361 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3321 0.10537404454203064 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3182 0.10096362834469783 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.855665163740668E-4 2 0.0 0.0 0.0 0.0 2.855665163740668E-4 3 0.0 0.0 0.0 0.0 2.855665163740668E-4 4 0.0 0.0 0.0 3.1729612930451864E-5 2.855665163740668E-4 5 0.0 0.0 0.0 3.1729612930451864E-5 2.855665163740668E-4 6 0.0 0.0 0.0 3.1729612930451864E-5 3.172961293045186E-4 7 0.0 0.0 0.0 3.1729612930451864E-5 3.4902574223497047E-4 8 0.0 0.0 0.0 3.1729612930451864E-5 3.8075535516542234E-4 9 0.0 0.0 0.0 1.586480646522593E-4 4.124849680958742E-4 10 0.0 0.0 0.0 2.2210729051316304E-4 4.124849680958742E-4 11 0.0 0.0 0.0 4.442145810263261E-4 4.124849680958742E-4 12 0.0 0.0 0.0 6.980514844699409E-4 4.124849680958742E-4 13 0.0 0.0 0.0 7.297810974003929E-4 4.7594419395677795E-4 14 0.0 0.0 0.0 8.249699361917484E-4 4.7594419395677795E-4 15 0.0 0.0 0.0 0.0011105364525658152 4.7594419395677795E-4 16 0.0 0.0 0.0 0.0014912918077312374 4.7594419395677795E-4 17 0.0 0.0 0.0 0.0020306952275489193 4.7594419395677795E-4 18 0.0 0.0 0.0 0.0022845321309925342 4.7594419395677795E-4 19 0.0 0.0 0.0 0.0028873947766711195 4.7594419395677795E-4 20 0.0 0.0 0.0 0.004822901165428683 6.028626456785854E-4 21 0.0 0.0 0.0 0.007964132845543417 6.028626456785854E-4 22 0.0 0.0 0.0 0.012818763623902552 6.028626456785854E-4 23 0.0 0.0 0.0 0.0153571326583387 6.345922586090372E-4 24 0.0 0.0 0.0 0.019799278468601963 6.345922586090372E-4 25 0.0 0.0 0.0 0.022591484406481725 6.980514844699409E-4 26 0.0 0.0 0.0 0.027858600152936733 6.980514844699409E-4 27 0.0 0.0 0.0 0.06545819147552219 6.980514844699409E-4 28 0.0 0.0 0.0 0.1468446486421312 6.980514844699409E-4 29 0.0 0.0 0.0 0.24574585214634967 6.980514844699409E-4 30 0.0 0.0 0.0 0.40071328169867654 7.297810974003929E-4 31 0.0 0.0 0.0 0.6168554049809146 7.297810974003929E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6980 0.0 29.472776 1 GTATTGG 1015 0.0 17.86207 1 GTATCAA 11960 0.0 17.154264 2 CAATGCG 140 3.479181E-8 15.857142 19 CTAATAC 885 0.0 15.677967 3 ATTGGAC 1315 0.0 15.61597 3 GGGTAAG 405 0.0 15.074074 1 TACTAGG 345 0.0 15.014493 2 GTATTAG 795 0.0 14.893083 1 TTGGACC 1750 0.0 14.694286 4 GCGACGA 265 0.0 14.660377 23 GGACCCT 1665 0.0 14.555555 6 TGGACCC 1680 0.0 14.535715 5 GACCCTC 1645 0.0 14.5076 7 CTCTAAT 770 0.0 14.4155855 1 TAATACT 1095 0.0 14.19178 4 TATACCG 145 8.92338E-7 14.034483 5 TAGTACT 520 0.0 13.875 4 CGTACAC 95 0.0012459157 13.631579 23 CCTATCG 95 0.0012459157 13.631579 3 >>END_MODULE