##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088108_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2082397 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.613574164772615 31.0 31.0 34.0 30.0 34.0 2 31.81277969570644 31.0 31.0 34.0 30.0 34.0 3 31.882653980004772 31.0 31.0 34.0 30.0 34.0 4 35.569711251024664 37.0 35.0 37.0 33.0 37.0 5 35.48073590194377 37.0 35.0 37.0 33.0 37.0 6 35.51396971855031 37.0 35.0 37.0 33.0 37.0 7 35.36908236037605 37.0 35.0 37.0 33.0 37.0 8 35.413045639232095 37.0 35.0 37.0 33.0 37.0 9 36.95600022474101 39.0 37.0 39.0 33.0 39.0 10 36.81119690433668 39.0 37.0 39.0 32.0 39.0 11 36.85582528211479 39.0 37.0 39.0 32.0 39.0 12 36.72303119914214 39.0 35.0 39.0 32.0 39.0 13 36.75113294919269 39.0 35.0 39.0 32.0 39.0 14 37.71629040956167 39.0 37.0 41.0 32.0 41.0 15 37.723815391589596 39.0 37.0 41.0 32.0 41.0 16 37.60281012698347 39.0 36.0 41.0 32.0 41.0 17 37.645191574901425 39.0 37.0 41.0 32.0 41.0 18 37.63510608207753 39.0 37.0 41.0 32.0 41.0 19 37.67346524221846 39.0 37.0 41.0 32.0 41.0 20 37.60090943273545 39.0 37.0 41.0 32.0 41.0 21 37.51653503150456 39.0 36.0 41.0 32.0 41.0 22 37.40557540180859 39.0 36.0 41.0 32.0 41.0 23 37.17892601650886 39.0 36.0 41.0 31.0 41.0 24 37.02176098025497 39.0 36.0 41.0 31.0 41.0 25 36.876054854093624 39.0 36.0 40.0 30.0 41.0 26 37.03666976085732 39.0 36.0 41.0 31.0 41.0 27 36.96705863483284 39.0 36.0 41.0 31.0 41.0 28 36.88344489547382 39.0 35.0 41.0 30.0 41.0 29 36.78831846184949 39.0 35.0 40.0 30.0 41.0 30 36.537994916435245 39.0 35.0 40.0 30.0 41.0 31 36.30680413004821 38.0 35.0 40.0 30.0 41.0 32 36.149046027246484 38.0 35.0 40.0 30.0 41.0 33 35.95835520316251 38.0 35.0 40.0 29.0 41.0 34 35.7999247982013 38.0 35.0 40.0 28.0 41.0 35 35.58469830680701 38.0 34.0 40.0 27.0 41.0 36 35.47967846669007 38.0 34.0 40.0 27.0 41.0 37 35.28678873432876 38.0 34.0 40.0 26.0 41.0 38 35.17909985463867 38.0 34.0 40.0 25.0 41.0 39 35.05736994434779 38.0 34.0 40.0 24.0 41.0 40 34.856359762331586 38.0 33.0 40.0 24.0 41.0 41 34.68295862892619 38.0 33.0 40.0 23.0 41.0 42 34.429398428829856 38.0 33.0 40.0 22.0 41.0 43 34.09005631491017 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 1.0 14 5.0 15 9.0 16 26.0 17 64.0 18 135.0 19 345.0 20 717.0 21 1528.0 22 2918.0 23 5073.0 24 8191.0 25 13024.0 26 18504.0 27 25778.0 28 35023.0 29 45866.0 30 58154.0 31 71766.0 32 88494.0 33 109113.0 34 134146.0 35 164416.0 36 211913.0 37 292028.0 38 378221.0 39 416936.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.46452237493619 21.862401837882018 14.791992112935237 22.881083674246554 2 18.662915860904526 23.72866461102278 35.53424250995367 22.074177018119023 3 19.162772516479805 24.498162454133386 33.764647183029936 22.574417846356866 4 13.503188873207176 16.381218374786364 36.54538495781544 33.57020779419102 5 11.894369805565413 39.031798451496044 35.192472905022434 13.881358837916114 6 31.66327074040157 37.874334240781174 13.198924124458497 17.26347089435876 7 25.133968210672602 34.231176860128016 21.239465865538605 19.395389063660772 8 26.89842522823458 34.87913207712074 18.85442593319141 19.36801676145327 9 24.110724323940154 14.769902184837955 22.38631730645021 38.733056184771684 10 16.154508482292282 28.14996371969418 33.503121642991225 22.19240615502231 11 32.59253638955492 22.626137091054204 23.95561461143096 20.825711907959914 12 20.871332411639088 27.715272352005886 31.050755451530136 20.362639784824893 13 31.727235488718048 21.393134930563193 26.83887846553755 20.04075111518121 14 20.194996439199635 23.383293387380025 28.274531705529732 28.147178467890612 15 21.921564427916483 30.020260305791837 26.16556785281577 21.89260741347591 16 21.259154714494883 29.090322354479 26.92565346569362 22.724869465332496 17 21.256945721685156 27.100115876079343 27.219545552553136 24.42339284968236 18 23.103183494789896 25.564865873318105 30.1793558096751 21.152594822216898 19 22.411336551099524 24.649766591096704 31.62590994896746 21.312986908836308 20 23.601311373383655 24.114181877903203 31.558871819350486 20.725634929362652 21 22.306409392637427 25.010792850738834 32.23112595725023 20.45167179937351 22 20.54007953334547 25.349921268614967 31.872788906246026 22.237210291793545 23 21.982455794932473 25.58047288773466 32.77328962729009 19.66378169004277 24 21.696487269238286 25.41143691620762 30.291246097646123 22.600829716907967 25 21.550597700630572 26.059248068451886 31.37177973268306 21.018374498234486 26 21.364177916122625 26.83527684682604 31.063000955149285 20.737544281902057 27 19.931790143762214 27.050797710523018 30.766227573320553 22.251184572394216 28 20.680830792591422 26.247636737855462 30.93680023549784 22.134732234055274 29 20.860863706584286 26.08445939943248 30.15625742833859 22.89841946564464 30 21.247101297207017 26.251766593977997 31.887435489006176 20.613696619808806 31 22.266599500479494 25.9046185717709 31.612896100023196 20.215885827726414 32 21.607023060444284 26.053197349016543 30.553828112506885 21.78595147803229 33 21.28148475050627 25.882768751587715 31.256864084994362 21.57888241291166 34 20.077391582873005 26.71166929264689 32.04211300726999 21.16882611721012 35 19.827391222711135 28.840754188562506 30.60290617014911 20.728948418577247 36 22.249695903326792 26.19193170178405 30.488230630374513 21.070141764514645 37 21.39712072193727 27.061122350829358 30.45519178139423 21.086565145839145 38 21.109471440844374 25.410716592465317 31.891757431459993 21.588054535230313 39 20.569852914693982 25.10385867824435 32.77886013089723 21.54742827616444 40 19.208825214404364 25.64510993821063 32.294034230744664 22.85203061664034 41 21.01693385074988 24.82787864177676 32.25177523786291 21.903412269610453 42 19.59703168992272 27.202978106480174 31.44323584791949 21.756754355677614 43 20.060295899389022 27.23760166769353 30.319290702013113 22.382811730904336 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 172.0 1 259.5 2 347.0 3 653.0 4 959.0 5 959.0 6 1761.5 7 2564.0 8 3016.0 9 3468.0 10 5609.0 11 7750.0 12 7750.0 13 15364.0 14 22978.0 15 38201.0 16 53424.0 17 50420.0 18 47416.0 19 47416.0 20 51315.0 21 55214.0 22 44555.0 23 33896.0 24 38218.5 25 42541.0 26 42541.0 27 46403.5 28 50266.0 29 53079.0 30 55892.0 31 61176.5 32 66461.0 33 66461.0 34 73518.0 35 80575.0 36 87398.5 37 94222.0 38 98729.0 39 103236.0 40 103236.0 41 107158.0 42 111080.0 43 115506.0 44 119932.0 45 130897.5 46 141863.0 47 141863.0 48 190522.0 49 239181.0 50 216595.0 51 194009.0 52 173745.0 53 153481.0 54 153481.0 55 133007.0 56 112533.0 57 95288.5 58 78044.0 59 69324.0 60 60604.0 61 60604.0 62 53317.0 63 46030.0 64 40394.5 65 34759.0 66 29325.5 67 23892.0 68 23892.0 69 20234.5 70 16577.0 71 13961.0 72 11345.0 73 9435.0 74 7525.0 75 7525.0 76 5944.0 77 4363.0 78 3467.0 79 2571.0 80 2037.5 81 1504.0 82 1504.0 83 1165.5 84 827.0 85 631.0 86 435.0 87 330.5 88 226.0 89 226.0 90 187.5 91 149.0 92 102.0 93 55.0 94 37.0 95 19.0 96 19.0 97 13.0 98 7.0 99 6.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2082397.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.16605102141754 #Duplication Level Percentage of deduplicated Percentage of total 1 76.08351692036163 35.12475524034299 2 12.827557825116026 11.843953780689805 3 4.5885100772512715 6.3550017101601215 4 2.1267407505283673 3.9273288799288175 5 1.114545160832259 2.572707438032804 6 0.7111024303635163 1.9697274648969663 7 0.42720390173724354 1.3805621986905157 8 0.3296192232624054 1.2173774303017781 9 0.23851987819277412 0.9910368779642915 >10 1.3416016794422114 11.694294274270122 >50 0.1270617299307948 4.057929259457328 >100 0.07267327239045807 6.3690732838853705 >500 0.004684603455030875 1.5847758775353593 >1k 0.005621524146037049 4.7304899120524 >5k 7.287160930048027E-4 2.51194786326431 >10k+ 3.123068970020583E-4 3.669038508527125 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 28128 1.350751081566099 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 26163 1.25638867132444 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 22052 1.0589719443506689 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9902 0.4755097130854491 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7833 0.3761530582304911 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7682 0.36890179922464356 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7219 0.34666780637889894 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6695 0.3215044969811232 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6553 0.31468543222065726 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6383 0.3065217631412262 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3965 0.19040557588202442 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3690 0.17719964060647417 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3520 0.1690359715270431 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3397 0.16312931684016066 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3285 0.1577508995643002 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3221 0.1546775182638085 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3005 0.14430485637464902 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2606 0.12514424482939612 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2574 0.12360755417915029 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2491 0.11962176280507512 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2409 0.11568399301382012 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2309 0.11088183473180187 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 2264 0.10872086350489366 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2263 0.10867284192207347 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2198 0.10555143903876159 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2196 0.10545539587312122 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2192 0.10526330954184049 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 4.8021582820182706E-5 0.0 0.0 0.0 0.0 6 4.8021582820182706E-5 0.0 0.0 0.0 0.0 7 4.8021582820182706E-5 0.0 0.0 0.0 0.0 8 4.8021582820182706E-5 0.0 0.0 0.0 0.0 9 4.8021582820182706E-5 0.0 0.0 9.604316564036541E-5 0.0 10 4.8021582820182706E-5 0.0 0.0 4.321942453816443E-4 0.0 11 4.8021582820182706E-5 0.0 0.0 7.683453251229233E-4 0.0 12 4.8021582820182706E-5 0.0 0.0 0.0013446043189651157 0.0 13 4.8021582820182706E-5 0.0 0.0 0.0015847122330660292 0.0 14 4.8021582820182706E-5 0.0 0.0 0.0018728417299871253 0.0 15 4.8021582820182706E-5 0.0 0.0 0.0023530575581889525 0.0 16 4.8021582820182706E-5 0.0 0.0 0.0033134892145926065 0.0 17 4.8021582820182706E-5 0.0 0.0 0.0040818345397155295 0.0 18 4.8021582820182706E-5 0.0 0.0 0.0051863309445797316 0.0 19 4.8021582820182706E-5 0.0 0.0 0.006098741018163203 0.0 20 4.8021582820182706E-5 0.0 0.0 0.009604316564036541 0.0 21 4.8021582820182706E-5 0.0 0.0 0.015174820171177734 0.0 22 4.8021582820182706E-5 0.0 0.0 0.02381870507881062 0.0 23 4.8021582820182706E-5 0.0 0.0 0.02828471228108761 0.0 24 4.8021582820182706E-5 0.0 0.0 0.03558399286975538 0.0 25 4.8021582820182706E-5 0.0 0.0 0.04000197848921219 0.0 26 4.8021582820182706E-5 0.0 0.0 0.048405755482744166 0.0 27 4.8021582820182706E-5 0.0 0.0 0.10156564766468641 0.0 28 4.8021582820182706E-5 0.0 0.0 0.21062266224932133 0.0 29 4.8021582820182706E-5 0.0 0.0 0.34152949701713936 0.0 30 4.8021582820182706E-5 0.0 0.0 0.5605559362599927 0.0 31 4.8021582820182706E-5 0.0 0.0 0.8354794979055387 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6435 0.0 30.387724 1 GTATTGG 705 0.0 21.25532 1 ATTGGAC 790 0.0 19.436708 3 GTGTACG 50 0.0070367525 18.5 1 TTGGACC 1220 0.0 18.045082 4 GTATCAA 11030 0.0 17.711697 2 TGGACCC 1230 0.0 17.146341 5 GTATTAG 270 0.0 17.12963 1 CGCATAC 65 0.0015805167 17.076923 37 ATAACGC 65 0.0015805167 17.076923 3 TATACCG 120 1.0423719E-7 16.958334 5 GGACCCT 1205 0.0 16.580914 6 TATCGGC 80 3.3842144E-4 16.1875 2 GATACTG 695 0.0 15.4388485 36 CGCCGGA 135 3.9763472E-7 15.074073 14 GACCCTC 1335 0.0 14.966291 7 TATTGGA 990 0.0 14.949495 2 ACGACGC 75 0.0041058944 14.8 27 CGAATTA 125 2.9613548E-6 14.799999 15 TGATACT 720 0.0 14.645834 35 >>END_MODULE