##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088105_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3497354 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.428025873274482 31.0 31.0 34.0 30.0 34.0 2 31.633168389588242 31.0 31.0 34.0 30.0 34.0 3 31.709521541142248 31.0 31.0 34.0 30.0 34.0 4 35.443337448825595 37.0 35.0 37.0 33.0 37.0 5 35.31065514100088 37.0 35.0 37.0 33.0 37.0 6 35.33620417035279 37.0 35.0 37.0 33.0 37.0 7 35.19965694064713 37.0 35.0 37.0 32.0 37.0 8 35.21043566078813 37.0 35.0 37.0 32.0 37.0 9 36.75368492866321 39.0 35.0 39.0 32.0 39.0 10 36.582748271979334 39.0 35.0 39.0 32.0 39.0 11 36.64926798945717 39.0 35.0 39.0 32.0 39.0 12 36.51880879087447 38.0 35.0 39.0 32.0 39.0 13 36.552403331204104 38.0 35.0 39.0 32.0 39.0 14 37.51182837081977 39.0 36.0 41.0 32.0 41.0 15 37.522709454061555 39.0 36.0 41.0 32.0 41.0 16 37.39500605314761 39.0 36.0 41.0 32.0 41.0 17 37.40771080079397 39.0 36.0 41.0 32.0 41.0 18 37.39230744156868 39.0 36.0 41.0 32.0 41.0 19 37.4252291875515 39.0 36.0 41.0 32.0 41.0 20 37.335049011338285 39.0 36.0 41.0 31.0 41.0 21 37.24471328896074 39.0 36.0 41.0 31.0 41.0 22 37.15337852559392 39.0 36.0 40.0 31.0 41.0 23 36.958644449489526 39.0 36.0 40.0 31.0 41.0 24 36.81182945735547 39.0 35.0 40.0 30.0 41.0 25 36.6703705143946 39.0 35.0 40.0 30.0 41.0 26 36.779007787029855 39.0 36.0 40.0 30.0 41.0 27 36.70732044854481 39.0 35.0 40.0 30.0 41.0 28 36.616341954517615 39.0 35.0 40.0 30.0 41.0 29 36.515189769179784 39.0 35.0 40.0 30.0 41.0 30 36.31726613891531 38.0 35.0 40.0 30.0 41.0 31 36.1502813269689 38.0 35.0 40.0 30.0 41.0 32 36.0169822671654 38.0 35.0 40.0 29.0 41.0 33 35.862322487228916 38.0 35.0 40.0 29.0 41.0 34 35.72941915516702 38.0 34.0 40.0 27.0 41.0 35 35.54410991852698 38.0 34.0 40.0 27.0 41.0 36 35.44563661556708 38.0 34.0 40.0 27.0 41.0 37 35.28274432613913 38.0 34.0 40.0 26.0 41.0 38 35.19613570716604 38.0 34.0 40.0 25.0 41.0 39 35.12460448670623 38.0 34.0 40.0 25.0 41.0 40 34.95028898990494 38.0 33.0 40.0 24.0 41.0 41 34.832927979266614 38.0 33.0 40.0 24.0 41.0 42 34.648593765458116 38.0 33.0 40.0 23.0 41.0 43 34.31788374868543 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 8.0 14 17.0 15 29.0 16 38.0 17 109.0 18 297.0 19 628.0 20 1346.0 21 2790.0 22 5086.0 23 8970.0 24 14572.0 25 22348.0 26 32907.0 27 45850.0 28 62583.0 29 82645.0 30 104194.0 31 128943.0 32 158358.0 33 192722.0 34 235475.0 35 285568.0 36 360614.0 37 474187.0 38 630655.0 39 646415.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.46727897719247 21.74340944611269 14.075097916882306 23.714213659812533 2 18.68381067515613 23.302988487868255 35.19003223579883 22.823168601176775 3 19.311971278858245 24.76171986021432 32.65217075537678 23.274138105550655 4 13.839291075481636 16.574273007536554 36.56507176568343 33.021364151298386 5 12.34158738291863 38.62628718739939 35.51316223636498 13.518963193317004 6 32.26991033792976 37.78891127406605 13.705075322658217 16.236103065345972 7 25.86135118149321 33.07191665470524 21.928034737118406 19.138697426683144 8 26.5101845566677 35.11669107559601 19.33264405033062 19.040480317405674 9 24.43301421589007 14.65313491285126 21.845801139947515 39.068049731311156 10 16.005042669400922 27.807250853073494 34.23977098114746 21.94793549637812 11 33.27386933092847 22.468529065116087 23.625575220581045 20.632026383374402 12 20.7990955448033 27.162534876366536 30.998835119350225 21.03953445947994 13 30.711617983195293 21.343278375594807 26.616407718520918 21.328695922688983 14 20.48940427534645 22.63694209965591 27.61939454799257 29.254259077005074 15 22.358931923963087 29.61321616284768 25.757701393682197 22.270150519507034 16 22.09070056963064 28.60173719903676 26.40573416359911 22.901828067733494 17 21.60453302696839 27.06208750958582 27.00613092069033 24.327248542755466 18 22.80978705615731 26.04923607961905 29.605696192035463 21.535280672188172 19 22.672311696213765 24.88415527853343 30.424915521848806 22.018617503404002 20 23.466740856087203 24.787024704962665 30.49419646967393 21.252037969276202 21 22.583129989128924 25.597351597807943 30.753964282712015 21.065554130351117 22 21.30004569168577 25.802192171567416 30.42834668723841 22.4694154495084 23 22.259599685933996 26.079230183733188 31.32788388021344 20.333286250119375 24 22.277842048588735 26.041773294896657 28.884093517556416 22.796291138958193 25 22.129701482892493 26.213846239185397 30.0576378599364 21.59881441798571 26 21.9927693908023 26.910801708949105 29.72164098915923 21.374787911089356 27 20.9764296093561 26.993835911377573 29.39885410513205 22.630880374134275 28 21.366495928064474 26.443305424615293 29.823918310814406 22.366280336505827 29 21.882857726155258 26.16352248013784 29.223121251094398 22.7304985426125 30 21.873393428288928 26.38440375209373 30.504632931067317 21.237569888550027 31 22.556995946078093 26.17387316239649 30.45633927820861 20.81279161331681 32 21.910535793631414 26.080802801203422 29.589884238198366 22.418777166966798 33 21.66778084231679 26.023702490511397 30.30751247943445 22.001004187737358 34 20.941974990235476 26.612804994861825 30.904478071136065 21.54074194376663 35 20.713573747467372 28.38791840917448 29.48969420882187 21.40881363453628 36 22.65341169352602 26.320212366263178 29.373778004743013 21.652597935467785 37 21.733201729078612 26.84549519436694 29.541190282710872 21.880112793843573 38 21.548633624162726 25.55429047216839 30.698979857343577 22.198096046325308 39 21.2208429572757 25.428395295414763 31.32279431821886 22.02796742909068 40 20.166217088690477 25.952648773901643 30.934500768295116 22.946633369112764 41 21.52384345422282 25.023346221171778 30.946910149787527 22.505900174817878 42 20.189863536833847 27.05036436117133 30.452422031055477 22.307350070939343 43 20.731101283999276 26.76223224757917 29.579733707254114 22.926932761167443 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 245.0 1 368.5 2 492.0 3 968.5 4 1445.0 5 1445.0 6 2662.0 7 3879.0 8 4358.5 9 4838.0 10 7670.0 11 10502.0 12 10502.0 13 20988.5 14 31475.0 15 49876.5 16 68278.0 17 64766.0 18 61254.0 19 61254.0 20 67157.5 21 73061.0 22 60718.0 23 48375.0 24 55754.0 25 63133.0 26 63133.0 27 70699.5 28 78266.0 29 85757.0 30 93248.0 31 103942.0 32 114636.0 33 114636.0 34 129519.0 35 144402.0 36 158283.0 37 172164.0 38 183893.5 39 195623.0 40 195623.0 41 201703.0 42 207783.0 43 217432.0 44 227081.0 45 236481.5 46 245882.0 47 245882.0 48 303719.5 49 361557.0 50 333644.5 51 305732.0 52 279906.0 53 254080.0 54 254080.0 55 224729.5 56 195379.0 57 166562.0 58 137745.0 59 124636.5 60 111528.0 61 111528.0 62 99945.5 63 88363.0 64 77028.5 65 65694.0 66 55528.0 67 45362.0 68 45362.0 69 38807.0 70 32252.0 71 26897.0 72 21542.0 73 17696.0 74 13850.0 75 13850.0 76 10982.0 77 8114.0 78 6382.0 79 4650.0 80 3583.0 81 2516.0 82 2516.0 83 1946.5 84 1377.0 85 1051.5 86 726.0 87 565.0 88 404.0 89 404.0 90 341.0 91 278.0 92 182.5 93 87.0 94 61.5 95 36.0 96 36.0 97 23.0 98 10.0 99 10.0 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3497354.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.46703838069033 #Duplication Level Percentage of deduplicated Percentage of total 1 73.58444721804045 32.720824386664866 2 13.768277504031238 12.244690484155047 3 5.215287925209038 6.957252250098635 4 2.506613554734304 4.4584672457571575 5 1.3511032545679613 3.0039780138574583 6 0.8271181906704305 2.2067697797945507 7 0.5272491195586376 1.641164478491939 8 0.36602396605576065 1.3020801397483204 9 0.2702320413273489 1.0814776698055968 >10 1.351172514649808 11.112335703533125 >50 0.1323812320141174 4.11199180851503 >100 0.08679529930864793 7.708940362607229 >500 0.007100969814293117 2.180661030971926 >1k 0.00555166730769053 4.7242153797355995 >5k 3.87325626117944E-4 1.528675905553906 >10k+ 2.582170840786293E-4 3.016475360709555 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 33511 0.9581815280923808 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 32461 0.9281588309333285 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 26144 0.7475365662154875 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12968 0.3707946064367519 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9969 0.285044064741516 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9478 0.2710048796890449 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8699 0.24873089770151952 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8652 0.2473870245905905 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8594 0.24572862798561426 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7862 0.22479851910901785 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4824 0.13793284866216002 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4691 0.13412997368868007 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4583 0.1310419248380347 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4390 0.12552346716975174 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3998 0.11431499356370559 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3897 0.1114270960274539 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3692 0.10556552182021037 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 8.577913474014926E-5 0.0 3 2.859304491338309E-5 0.0 0.0 8.577913474014926E-5 0.0 4 2.859304491338309E-5 0.0 0.0 8.577913474014926E-5 0.0 5 5.718608982676618E-5 0.0 0.0 8.577913474014926E-5 0.0 6 8.577913474014926E-5 0.0 0.0 8.577913474014926E-5 0.0 7 1.1437217965353236E-4 0.0 0.0 8.577913474014926E-5 0.0 8 1.1437217965353236E-4 0.0 0.0 8.577913474014926E-5 0.0 9 1.1437217965353236E-4 0.0 0.0 1.7155826948029852E-4 0.0 10 1.1437217965353236E-4 0.0 0.0 2.573374042204478E-4 0.0 11 1.1437217965353236E-4 0.0 0.0 6.004539431810449E-4 0.0 12 1.1437217965353236E-4 0.0 0.0 9.149774372282589E-4 0.0 13 1.1437217965353236E-4 0.0 0.0 0.0010579426617951743 0.0 14 1.4296522456691544E-4 0.0 0.0 0.0012295009312754729 0.0 15 1.4296522456691544E-4 0.0 0.0 0.0016298035600628361 0.0 16 1.4296522456691544E-4 0.0 0.0 0.001972920099023433 0.0 17 1.7155826948029852E-4 0.0 0.0 0.0025447809972910947 0.0 18 1.7155826948029852E-4 0.0 0.0 0.0029736766709918413 0.0 19 1.7155826948029852E-4 0.0 0.0 0.0037170958387398017 0.0 20 1.7155826948029852E-4 0.0 0.0 0.005918760297070299 0.0 21 1.7155826948029852E-4 0.0 0.0 0.00989319354003055 0.0 22 1.7155826948029852E-4 0.0 0.0 0.015697581657447317 0.0 23 1.7155826948029852E-4 0.0 0.0 0.018528293103872242 0.0 24 1.7155826948029852E-4 0.0 0.0 0.023017401155273388 0.0 25 1.7155826948029852E-4 0.0 0.0 0.027134799622800552 0.0 26 2.0015131439368164E-4 0.0 0.0 0.03414009562657941 0.0 27 2.0015131439368164E-4 0.0 0.0 0.07937429267955146 0.0 28 2.0015131439368164E-4 0.0 0.0 0.16795554582121228 0.0 29 2.2874435930706472E-4 0.0 0.0 0.272577497159281 0.0 30 2.573374042204478E-4 0.0 0.0 0.4375879593544148 0.0 31 2.573374042204478E-4 0.0 0.0 0.6610997914423304 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7895 0.0 29.478151 1 GTATTGG 1140 0.0 18.337719 1 GTATCAA 13310 0.0 17.47145 2 ATTGGAC 1280 0.0 16.765625 3 TTGGACC 1875 0.0 16.378668 4 GGACCCT 1775 0.0 16.36338 6 TGGACCC 1860 0.0 16.112904 5 TATACCG 230 0.0 16.086956 5 CTAATAC 920 0.0 14.880435 3 CGGCGTA 75 0.0041066357 14.8 12 CTCTAAT 675 0.0 14.8 1 GACCCTC 2055 0.0 14.313869 7 TAATACT 1110 0.0 14.0 4 CGAACTA 655 0.0 13.839694 24 TTACACT 595 0.0 13.680673 4 TAGGGGT 285 0.0 13.631578 4 TAGGTCG 180 5.1686584E-8 13.361111 21 GTCGACG 125 4.8499132E-5 13.320001 36 GCGAACT 700 0.0 13.214285 23 TCTAATA 905 0.0 12.878453 2 >>END_MODULE