##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088104_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3331405 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.67724008338824 31.0 31.0 34.0 30.0 34.0 2 31.88124139814883 31.0 31.0 34.0 30.0 34.0 3 31.96953597656244 31.0 31.0 34.0 30.0 34.0 4 35.65279724320519 37.0 35.0 37.0 33.0 37.0 5 35.541233803755475 37.0 35.0 37.0 33.0 37.0 6 35.561206157762264 37.0 35.0 37.0 33.0 37.0 7 35.44469315499016 37.0 35.0 37.0 33.0 37.0 8 35.45961028454961 37.0 35.0 37.0 33.0 37.0 9 37.04519234377087 39.0 37.0 39.0 33.0 39.0 10 36.87846629275035 39.0 37.0 39.0 33.0 39.0 11 36.92154361298011 39.0 37.0 39.0 33.0 39.0 12 36.80439154050618 39.0 37.0 39.0 32.0 39.0 13 36.82498585431672 39.0 37.0 39.0 32.0 39.0 14 37.881356064483306 40.0 37.0 41.0 33.0 41.0 15 37.87746071102133 40.0 37.0 41.0 33.0 41.0 16 37.773617437687705 40.0 37.0 41.0 32.0 41.0 17 37.739900732573794 39.0 37.0 41.0 32.0 41.0 18 37.715254374655736 39.0 37.0 41.0 32.0 41.0 19 37.74316121876505 40.0 37.0 41.0 32.0 41.0 20 37.65241692319007 39.0 37.0 41.0 32.0 41.0 21 37.55870481073301 39.0 36.0 41.0 32.0 41.0 22 37.43853359168279 39.0 36.0 41.0 32.0 41.0 23 37.25309081303534 39.0 36.0 41.0 31.0 41.0 24 37.114691549061135 39.0 36.0 41.0 31.0 41.0 25 36.95925262764509 39.0 36.0 40.0 31.0 41.0 26 37.161074981877015 39.0 36.0 41.0 31.0 41.0 27 37.106111085262825 39.0 36.0 41.0 31.0 41.0 28 37.0402505849634 39.0 36.0 41.0 31.0 41.0 29 36.975778687970994 39.0 36.0 41.0 31.0 41.0 30 36.774152046959166 39.0 35.0 40.0 30.0 41.0 31 36.6100188959313 39.0 35.0 40.0 30.0 41.0 32 36.465696305312626 39.0 35.0 40.0 30.0 41.0 33 36.32153190620774 38.0 35.0 40.0 30.0 41.0 34 36.209619364802535 38.0 35.0 40.0 30.0 41.0 35 36.031005536702985 38.0 35.0 40.0 29.0 41.0 36 35.952027748052245 38.0 35.0 40.0 28.0 41.0 37 35.80176201932818 38.0 35.0 40.0 27.0 41.0 38 35.734994094083426 38.0 35.0 40.0 27.0 41.0 39 35.671537684550515 38.0 35.0 40.0 27.0 41.0 40 35.52050561249683 38.0 34.0 40.0 26.0 41.0 41 35.40042684693095 38.0 34.0 40.0 25.0 41.0 42 35.24367556631511 38.0 34.0 40.0 25.0 41.0 43 34.92683537426401 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 1.0 13 3.0 14 7.0 15 14.0 16 34.0 17 99.0 18 220.0 19 472.0 20 1056.0 21 2154.0 22 4046.0 23 7085.0 24 11626.0 25 17423.0 26 25383.0 27 36055.0 28 49127.0 29 65362.0 30 84242.0 31 105563.0 32 131829.0 33 164112.0 34 204136.0 35 254362.0 36 330848.0 37 453280.0 38 639972.0 39 742893.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.54118307440854 21.633995266261532 13.674290577098851 24.150531082231073 2 18.378041697121787 22.958841689917616 35.61065076146551 23.05246585149509 3 18.694694880988653 24.912521893915628 32.496139016421 23.89664420867472 4 13.359288348309498 16.611279625263215 37.465964060208826 32.563467966218454 5 12.174713071511869 38.74227240458605 36.00498888607059 13.078025637831486 6 31.84377162188326 38.776402148642994 14.1623128980115 15.217513331462252 7 26.188530064642396 32.90086314933189 22.283480993754885 18.627125792270828 8 26.225001163172895 35.617314616505645 19.44302779157743 18.71465642874403 9 24.7428937640425 14.631844522056008 21.50447033608943 39.12079137781206 10 15.768091841130094 27.862328356954496 34.535338693434156 21.834241108481255 11 33.58414842986668 22.720443776724835 23.482554657869578 20.212853135538907 12 20.698384015152765 27.106100879358706 31.061459054062773 21.134056051425752 13 29.991400024914412 21.61517437837789 26.34432018922947 22.049105407478226 14 20.58179656931535 22.367829789533246 27.5319872546268 29.518386386524604 15 22.668363648370583 29.71382945033702 25.305809410744118 22.311997490548283 16 22.270903717800746 28.630412693743327 26.06086621110312 23.0378173773528 17 21.785192733996617 27.295030174956214 26.968321173799044 23.951455917248126 18 22.39169359474456 26.6622641197933 29.23934496105997 21.706697324402167 19 22.7901440983609 25.434073611584303 29.872111016222885 21.90367127383191 20 23.34618576846706 25.449832728233286 29.728357855019127 21.475623648280532 21 22.351860551328944 26.148667003861735 30.06326159683377 21.436210847975552 22 21.620697573546295 26.442086747183247 29.668353142292816 22.26886253697764 23 22.36834008473902 26.514338544848194 30.339841598364654 20.777479772048128 24 22.48171567251655 26.699305548259666 28.207738176535123 22.611240602688657 25 22.405381513205388 26.529407262101124 29.38279794861327 21.68241327608021 26 22.030794814800363 27.192791029610632 29.212779592994547 21.563634562594462 27 21.53412749275456 27.156500035270405 28.688256156186355 22.621116315788683 28 21.642940441045145 26.688079053732583 29.366528536758512 22.302451968463757 29 22.202554177591736 26.634588109221184 28.772995177710303 22.389862535476773 30 22.071408309707166 26.66400512696595 29.734721536408813 21.52986502691807 31 22.48132544677096 26.581577442550515 29.7757852917913 21.161311818887228 32 21.809596851778753 26.406336065413843 29.20596565112918 22.578101431678228 33 21.747701045054562 26.337716368919416 29.90401947526644 22.010563110759573 34 21.311638783035985 26.6188289925722 30.45699937413794 21.61253285025387 35 21.180132706770866 28.079023715219254 29.059240770785898 21.681602807223978 36 22.714200164795333 26.4837208325016 29.027842606948116 21.774236395754944 37 21.763610248528774 26.723709666041806 29.326215215502167 22.186464869927253 38 21.7002135735523 25.72716316389031 30.186993175552058 22.38563008700533 39 21.27390695517357 25.86269156707155 30.797876571596667 22.065524906158213 40 20.497958068742765 26.28794757767368 30.485816044581792 22.728278309001755 41 21.492043146960516 25.171721841085066 30.70269150703682 22.633543504917593 42 20.37359612535852 27.028445955985536 30.100903372601053 22.497054546054894 43 21.02194119298014 26.29758315185335 29.608138308011185 23.07233734715533 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 220.0 1 315.5 2 411.0 3 870.0 4 1329.0 5 1329.0 6 2236.0 7 3143.0 8 3589.5 9 4036.0 10 6325.0 11 8614.0 12 8614.0 13 16346.5 14 24079.0 15 39126.0 16 54173.0 17 51449.0 18 48725.0 19 48725.0 20 54195.5 21 59666.0 22 51755.5 23 43845.0 24 50997.0 25 58149.0 26 58149.0 27 67139.5 28 76130.0 29 84580.5 30 93031.0 31 105242.0 32 117453.0 33 117453.0 34 133641.0 35 149829.0 36 165841.5 37 181854.0 38 194224.5 39 206595.0 40 206595.0 41 211734.5 42 216874.0 43 226183.0 44 235492.0 45 237215.5 46 238939.0 47 238939.0 48 275972.5 49 313006.0 50 289965.0 51 266924.0 52 246980.0 53 227036.0 54 227036.0 55 204238.5 56 181441.0 57 157802.5 58 134164.0 59 122311.5 60 110459.0 61 110459.0 62 98465.5 63 86472.0 64 75030.5 65 63589.0 66 53819.0 67 44049.0 68 44049.0 69 37617.5 70 31186.0 71 25781.0 72 20376.0 73 16578.0 74 12780.0 75 12780.0 76 10134.0 77 7488.0 78 5980.0 79 4472.0 80 3456.5 81 2441.0 82 2441.0 83 1912.5 84 1384.0 85 1051.5 86 719.0 87 572.5 88 426.0 89 426.0 90 338.5 91 251.0 92 166.5 93 82.0 94 67.0 95 52.0 96 52.0 97 32.0 98 12.0 99 10.5 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3331405.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.121004381578786 #Duplication Level Percentage of deduplicated Percentage of total 1 74.88169211102989 33.78737157841813 2 13.185292364640128 11.898672691146489 3 5.000769554126638 6.769192348890414 4 2.2821997883562837 4.119005866002482 5 1.2547332478326458 2.8307412186584693 6 0.7373914643015961 1.9963106095014667 7 0.4703165396193259 1.4854808251424803 8 0.3418981028498434 1.2341428637393006 9 0.25961922368439266 1.0542852116465007 >10 1.3373710222287707 11.280206345165022 >50 0.13719716103362767 4.30913913330228 >100 0.09566372440577514 8.489468354858795 >500 0.009659982791054624 3.0395639503412246 >1k 0.005529507390367504 4.070857995727194 >5k 3.997234258096991E-4 1.1278463503761074 >10k+ 2.6648228387313275E-4 2.507714657083592 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 27866 0.8364638943628889 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 24426 0.7332041586057534 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 21014 0.6307849090698969 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10118 0.30371569953217936 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7048 0.21156238884194506 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7031 0.2110520936361685 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6101 0.18313594414368714 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5823 0.1747911166609884 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5792 0.17386057834457233 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5725 0.17184941488651184 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.0017365045678924E-5 0.0 3 0.0 0.0 0.0 3.0017365045678924E-5 0.0 4 0.0 0.0 0.0 3.0017365045678924E-5 0.0 5 3.0017365045678924E-5 0.0 0.0 3.0017365045678924E-5 0.0 6 3.0017365045678924E-5 0.0 0.0 3.0017365045678924E-5 0.0 7 3.0017365045678924E-5 0.0 0.0 3.0017365045678924E-5 0.0 8 3.0017365045678924E-5 0.0 0.0 3.0017365045678924E-5 0.0 9 3.0017365045678924E-5 0.0 0.0 1.200694601827157E-4 0.0 10 3.0017365045678924E-5 0.0 0.0 1.8010419027407357E-4 0.0 11 3.0017365045678924E-5 0.0 0.0 2.1012155531975247E-4 0.0 12 6.003473009135785E-5 0.0 0.0 3.90225745593826E-4 0.0 13 6.003473009135785E-5 0.0 0.0 4.802778407308628E-4 0.0 14 1.5008682522839464E-4 0.0 0.0 5.102952057765418E-4 0.0 15 1.5008682522839464E-4 0.0 0.0 5.403125708222207E-4 0.0 16 1.8010419027407357E-4 0.0 0.0 9.905730465074045E-4 0.0 17 1.8010419027407357E-4 0.0 0.0 0.0016809724425580197 0.0 18 2.1012155531975247E-4 0.0 0.0 0.0019511287279691302 0.0 19 2.1012155531975247E-4 0.0 0.0 0.0024914412987913507 0.0 20 2.1012155531975247E-4 0.0 0.0 0.004172413741349371 0.0 21 2.1012155531975247E-4 0.0 0.0 0.007294219706099979 0.0 22 2.1012155531975247E-4 0.0 0.0 0.011616720272677744 3.0017365045678924E-5 23 2.1012155531975247E-4 0.0 0.0 0.014168196301560453 3.0017365045678924E-5 24 2.1012155531975247E-4 0.0 0.0 0.017380054361448096 3.0017365045678924E-5 25 2.1012155531975247E-4 0.0 0.0 0.020291738770878955 3.0017365045678924E-5 26 2.1012155531975247E-4 0.0 0.0 0.025544777653872766 9.005209513703678E-5 27 2.1012155531975247E-4 0.0 0.0 0.060515007932088714 9.005209513703678E-5 28 2.1012155531975247E-4 0.0 0.0 0.13841007022562551 9.005209513703678E-5 29 2.1012155531975247E-4 0.0 0.0 0.23209426653318946 9.005209513703678E-5 30 2.401389203654314E-4 0.0 0.0 0.3729057259624693 9.005209513703678E-5 31 2.401389203654314E-4 0.0 0.0 0.5948841404752649 1.200694601827157E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTAGG 30 3.6009325E-4 30.833334 33 GGTATCA 6555 0.0 28.420292 1 ACGTTTA 170 0.0 18.5 26 TCGCGTA 95 3.6105466E-6 17.526316 23 TAATACT 1095 0.0 17.063927 4 GTATCAA 11020 0.0 16.905172 2 TTAACGG 615 0.0 16.845528 35 GTATTGG 1065 0.0 16.328638 1 ATCGCGT 125 1.6603735E-7 16.279999 22 GTGTCGA 80 3.3849783E-4 16.1875 11 CTCTAAT 835 0.0 16.173653 1 GTATTAG 1055 0.0 16.132702 1 GGTAAAC 755 0.0 15.927153 35 TAACGGC 640 0.0 15.8984375 36 CTAATAC 1005 0.0 15.646766 3 GGACCCT 1420 0.0 14.591549 6 TATACTG 495 0.0 14.575758 5 AACGGCC 750 0.0 14.553332 37 TACCCCG 590 0.0 14.423729 5 ATTAGAG 975 0.0 14.420512 3 >>END_MODULE