##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088102_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3396828 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.51260793893597 31.0 31.0 34.0 30.0 34.0 2 31.71326013563242 31.0 31.0 34.0 30.0 34.0 3 31.78748879837307 31.0 31.0 34.0 30.0 34.0 4 35.510654940432666 37.0 35.0 37.0 33.0 37.0 5 35.38522586365868 37.0 35.0 37.0 33.0 37.0 6 35.41089275053079 37.0 35.0 37.0 33.0 37.0 7 35.2870657566412 37.0 35.0 37.0 32.0 37.0 8 35.28822271837137 37.0 35.0 37.0 32.0 37.0 9 36.85049493233099 39.0 37.0 39.0 33.0 39.0 10 36.67356575016456 39.0 35.0 39.0 32.0 39.0 11 36.73467275940966 39.0 35.0 39.0 32.0 39.0 12 36.615015832417775 39.0 35.0 39.0 32.0 39.0 13 36.652466359792136 39.0 35.0 39.0 32.0 39.0 14 37.641297116015295 39.0 36.0 41.0 32.0 41.0 15 37.65088547315319 39.0 36.0 41.0 32.0 41.0 16 37.52875241254488 39.0 36.0 41.0 32.0 41.0 17 37.52145501626812 39.0 36.0 41.0 32.0 41.0 18 37.509619857113755 39.0 36.0 41.0 32.0 41.0 19 37.53993254883674 39.0 36.0 41.0 32.0 41.0 20 37.44860734779624 39.0 36.0 41.0 32.0 41.0 21 37.35908912667936 39.0 36.0 41.0 31.0 41.0 22 37.26762438368972 39.0 36.0 40.0 31.0 41.0 23 37.08498075263157 39.0 36.0 40.0 31.0 41.0 24 36.95226546648815 39.0 36.0 40.0 31.0 41.0 25 36.80962356645671 39.0 35.0 40.0 30.0 41.0 26 36.93421804106655 39.0 36.0 40.0 31.0 41.0 27 36.86491779978262 39.0 36.0 40.0 30.0 41.0 28 36.78221387718189 39.0 35.0 40.0 30.0 41.0 29 36.67968057258124 39.0 35.0 40.0 30.0 41.0 30 36.48615119752899 39.0 35.0 40.0 30.0 41.0 31 36.335325486012245 38.0 35.0 40.0 30.0 41.0 32 36.20364498879543 38.0 35.0 40.0 30.0 41.0 33 36.061584219159755 38.0 35.0 40.0 29.0 41.0 34 35.93767244028841 38.0 35.0 40.0 29.0 41.0 35 35.748951374635396 38.0 35.0 40.0 27.0 41.0 36 35.65093758058989 38.0 34.0 40.0 27.0 41.0 37 35.50368078689883 38.0 34.0 40.0 27.0 41.0 38 35.41785218444973 38.0 34.0 40.0 26.0 41.0 39 35.359154187377165 38.0 34.0 40.0 26.0 41.0 40 35.19405074381158 38.0 34.0 40.0 25.0 41.0 41 35.08943431931202 38.0 34.0 40.0 24.0 41.0 42 34.909703994432455 38.0 33.0 40.0 24.0 41.0 43 34.58023632636095 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 2.0 14 7.0 15 14.0 16 38.0 17 94.0 18 216.0 19 530.0 20 1118.0 21 2229.0 22 4331.0 23 7628.0 24 12664.0 25 19540.0 26 28772.0 27 41018.0 28 56130.0 29 73968.0 30 95395.0 31 119355.0 32 148249.0 33 181781.0 34 223263.0 35 274293.0 36 347485.0 37 461563.0 38 625647.0 39 671496.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.30642705488768 21.94691635843793 13.957580425031823 23.789076161642566 2 18.465226970573724 23.034901973252694 35.642870348454494 22.857000707719084 3 19.001020952488616 24.983190199798162 32.677191780096024 23.3385970676172 4 13.439126149454728 16.552030305920702 37.23550324008163 32.77334030454294 5 12.09808091548939 38.66636756409215 36.051751810807026 13.183799709611439 6 31.86987978196129 38.31833698968567 13.910889806607813 15.900893421745227 7 25.82827272973492 32.99136724026062 22.261651163968267 18.918708866036198 8 26.083039824212474 35.539332577333916 19.4294500634121 18.948177535041516 9 24.369352819748304 14.600444885640368 21.92775141985405 39.102450874757274 10 15.79208602849482 27.75312732937906 34.67832342408859 21.776463218037534 11 33.102176501135766 22.595845300380237 23.724928079961657 20.57705011852234 12 20.541752482021465 27.235055763789042 31.230194758168505 20.99299699602099 13 30.270711381323988 21.54436433048715 26.667644049095212 21.517280239093648 14 20.328111991540343 22.666499451841542 27.68986242459141 29.315526132026704 15 22.283318437083068 29.66835530088659 25.851294207419397 22.19703205461095 16 22.021427048999833 28.62367479307165 26.5124993081781 22.842398849750413 17 21.456017201930745 27.14859274593827 27.243092673517765 24.152297378613223 18 22.52324815975375 26.26323734966857 29.716723955407808 21.496790535169872 19 22.534670580906656 25.141808769828796 30.36429869278044 21.959221956484107 20 23.20093922918676 25.049016317576278 30.572787318050842 21.17725713518612 21 22.28184647559429 25.823032546834874 30.82552310567388 21.06959787189696 22 21.174578165276547 26.094197292297398 30.36250289976413 22.368721642661917 23 22.150665267714466 26.322675154585397 31.25351062815073 20.2731489495494 24 22.18696383802771 26.329681691271972 28.766042908266183 22.71731156243413 25 21.967111670063954 26.44405309894996 30.03293072242692 21.555904508559163 26 21.87637996389573 27.05259141764022 29.787701938396644 21.283326680067404 27 21.002682502617148 27.079911022871926 29.32506444247398 22.592342032036946 28 21.281089298604464 26.562722634175177 30.05765967543838 22.09852839178198 29 21.875879496989544 26.406047053309734 29.22959302031189 22.48848042938883 30 21.80225198332091 26.53372499284627 30.45820983576443 21.205813188068397 31 22.348467452576344 26.471667096479422 30.410253330460062 20.76961212048417 32 21.660443213492115 26.152693041861408 29.705890318850408 22.480973425796066 33 21.52737789490666 26.19381964585784 30.40507202601957 21.87373043321593 34 20.91236294566578 26.74218417888689 30.95917720885485 21.386275666592482 35 20.724334585089384 28.484515553922655 29.39889803075104 21.392251830236916 36 22.63658919438959 26.496543245639753 29.346231248682596 21.52063631128806 37 21.629590900687347 26.934392910091415 29.590753491198257 21.845262698022978 38 21.534826020039873 25.68319620540104 30.62083214104453 22.16114563351456 39 21.180995917367614 25.769040999426522 31.14249529266716 21.907467790538703 40 20.102371977621473 26.45365028785679 30.794170325962927 22.649807408558807 41 21.449275618312143 25.201629284732697 30.968715519302126 22.380379577653034 42 20.206145262580264 27.273621154795002 30.327499655561013 22.19273392706372 43 20.828961607711665 26.746040717987484 29.55407221089793 22.870925463402916 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 204.0 1 337.0 2 470.0 3 953.5 4 1437.0 5 1437.0 6 2490.5 7 3544.0 8 4060.5 9 4577.0 10 7210.5 11 9844.0 12 9844.0 13 19059.5 14 28275.0 15 45069.5 16 61864.0 17 59068.5 18 56273.0 19 56273.0 20 62484.5 21 68696.0 22 58265.5 23 47835.0 24 54876.0 25 61917.0 26 61917.0 27 69778.0 28 77639.0 29 85317.0 30 92995.0 31 104553.5 32 116112.0 33 116112.0 34 132208.5 35 148305.0 36 162919.5 37 177534.0 38 189575.5 39 201617.0 40 201617.0 41 206373.0 42 211129.0 43 221269.0 44 231409.0 45 237068.0 46 242727.0 47 242727.0 48 293485.5 49 344244.0 50 316647.0 51 289050.0 52 265295.0 53 241540.0 54 241540.0 55 213073.5 56 184607.0 57 157256.0 58 129905.0 59 117647.5 60 105390.0 61 105390.0 62 94025.0 63 82660.0 64 71438.5 65 60217.0 66 50456.0 67 40695.0 68 40695.0 69 34674.5 70 28654.0 71 23729.0 72 18804.0 73 15183.5 74 11563.0 75 11563.0 76 9191.0 77 6819.0 78 5319.0 79 3819.0 80 2986.0 81 2153.0 82 2153.0 83 1602.0 84 1051.0 85 808.5 86 566.0 87 439.0 88 312.0 89 312.0 90 273.0 91 234.0 92 159.0 93 84.0 94 61.0 95 38.0 96 38.0 97 27.0 98 16.0 99 10.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3396828.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.12393084588438 #Duplication Level Percentage of deduplicated Percentage of total 1 74.04030350131168 32.66949231500168 2 13.858017284998 12.229403926886445 3 5.201162864983714 6.884872517181699 4 2.326771839893085 4.106652790303745 5 1.2613639626620878 2.7828168129996325 6 0.7392175741827073 1.9570311073980111 7 0.49380605373926695 1.5252064916529338 8 0.31023000085866514 1.0950853683365114 9 0.2337403846794303 0.9282190112537037 >10 1.2814506339454819 10.717160144180662 >50 0.13898216009176353 4.297162574438667 >100 0.0982468706505305 8.569594417326995 >500 0.009623155970387326 2.9486022930868545 >1k 0.006415437313104931 5.074136535773189 >5k 4.009648320690582E-4 1.394052527598916 >10k+ 2.673098880460388E-4 2.820511166580348 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 30682 0.9032544479732267 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 29642 0.8726376490066615 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 23755 0.6993289033180367 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11574 0.3407296454221409 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8623 0.2538544783545119 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8343 0.2456114940173597 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8131 0.23937037730494448 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7664 0.22562225699976568 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7593 0.22353207168570205 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6923 0.2038077877360879 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4455 0.13115176865004646 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4253 0.12520504423538667 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4037 0.11884617060386926 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3675 0.10818916942512251 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3528 0.1038616026481176 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3527 0.10383216341834205 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 2.9439229775543536E-5 0.0 6 5.887845955108707E-5 0.0 0.0 2.9439229775543536E-5 0.0 7 5.887845955108707E-5 0.0 0.0 2.9439229775543536E-5 0.0 8 8.831768932663061E-5 0.0 0.0 2.9439229775543536E-5 0.0 9 1.1775691910217414E-4 0.0 0.0 2.6495306797989185E-4 0.0 10 1.1775691910217414E-4 0.0 0.0 4.121492168576095E-4 0.0 11 1.1775691910217414E-4 0.0 0.0 6.182238252864143E-4 0.0 12 1.1775691910217414E-4 0.0 0.0 7.948592039396755E-4 0.0 13 1.1775691910217414E-4 0.0 0.0 9.714945825929367E-4 0.0 14 1.1775691910217414E-4 0.0 0.0 0.0011186907314706543 0.0 15 1.1775691910217414E-4 0.0 0.0 0.0013836437994505463 0.0 16 1.1775691910217414E-4 0.0 0.0 0.0019135499354103298 0.0 17 1.1775691910217414E-4 0.0 0.0 0.0022373814629413086 0.0 18 1.1775691910217414E-4 0.0 0.0 0.0025612129904722877 0.0 19 1.1775691910217414E-4 0.0 0.0 0.0030322406668809843 0.0 20 1.1775691910217414E-4 0.0 0.0 0.004798594453413596 0.0 21 1.1775691910217414E-4 0.0 0.0 0.008360741256254365 0.0 22 1.1775691910217414E-4 0.0 0.0 0.014219147981587528 0.0 23 1.1775691910217414E-4 0.0 0.0 0.017133631729366338 0.0 24 1.1775691910217414E-4 0.0 0.0 0.021490637736146782 0.0 25 1.1775691910217414E-4 0.0 0.0 0.024022411496843525 0.0 26 1.1775691910217414E-4 0.0 0.0 0.02979250053285006 0.0 27 1.1775691910217414E-4 0.0 0.0 0.06517845472305339 0.0 28 1.1775691910217414E-4 0.0 0.0 0.13865877224281006 0.0 29 1.1775691910217414E-4 0.0 0.0 0.22927272149193306 0.0 30 1.1775691910217414E-4 0.0 0.0 0.3719646682139926 0.0 31 1.1775691910217414E-4 0.0 0.0 0.572386944525893 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7405 0.0 29.455097 1 GTATTGG 1195 0.0 19.8159 1 GTATTAG 805 0.0 17.46584 1 GTATCAA 12510 0.0 17.405676 2 TGGACCC 1855 0.0 16.555258 5 ATTGGAC 1570 0.0 15.907643 3 TTGGACC 2030 0.0 15.766008 4 GGACCCT 1900 0.0 15.578947 6 GACCCTC 2045 0.0 14.745721 7 ACGCGAT 90 8.2798896E-4 14.388888 6 TAATACT 1155 0.0 14.255411 4 GTACCGT 105 1.6571351E-4 14.095239 6 TAGACAG 475 0.0 14.021052 5 CGCGATA 80 0.0063019665 13.875 14 GTCGTCA 160 1.7864659E-7 13.875 24 CTAATAC 935 0.0 13.652406 3 CTAGTAC 395 0.0 13.582278 3 TTAACGG 560 0.0 13.214285 35 CCCTCGC 2160 0.0 13.104167 9 TAACGGC 580 0.0 13.077586 36 >>END_MODULE