##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088090_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4172273 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.692971912432384 31.0 31.0 34.0 30.0 34.0 2 31.89159889585365 31.0 31.0 34.0 30.0 34.0 3 31.967201570942265 31.0 31.0 34.0 30.0 34.0 4 35.64504623738667 37.0 35.0 37.0 33.0 37.0 5 35.54876418681136 37.0 35.0 37.0 33.0 37.0 6 35.58817795479826 37.0 35.0 37.0 33.0 37.0 7 35.46185352684256 37.0 35.0 37.0 33.0 37.0 8 35.500035112755086 37.0 35.0 37.0 33.0 37.0 9 37.06824337717115 39.0 37.0 39.0 33.0 39.0 10 36.92056344347554 39.0 37.0 39.0 33.0 39.0 11 36.96502505948197 39.0 37.0 39.0 33.0 39.0 12 36.846464505079126 39.0 37.0 39.0 32.0 39.0 13 36.87412376898635 39.0 37.0 39.0 33.0 39.0 14 37.90159896056658 40.0 37.0 41.0 33.0 41.0 15 37.89236202904268 40.0 37.0 41.0 33.0 41.0 16 37.784277778563386 40.0 37.0 41.0 32.0 41.0 17 37.80076998796579 40.0 37.0 41.0 32.0 41.0 18 37.79138996896895 40.0 37.0 41.0 32.0 41.0 19 37.83687237148672 40.0 37.0 41.0 32.0 41.0 20 37.75622903870384 40.0 37.0 41.0 32.0 41.0 21 37.678119336869855 39.0 37.0 41.0 32.0 41.0 22 37.566303786928614 39.0 36.0 41.0 32.0 41.0 23 37.37906963422576 39.0 36.0 41.0 31.0 41.0 24 37.237120629450665 39.0 36.0 41.0 31.0 41.0 25 37.07139561577107 39.0 36.0 41.0 31.0 41.0 26 37.268131303967884 39.0 36.0 41.0 31.0 41.0 27 37.21441573933441 39.0 36.0 41.0 31.0 41.0 28 37.1483287407128 39.0 36.0 41.0 31.0 41.0 29 37.06344119859846 39.0 36.0 41.0 31.0 41.0 30 36.83596303501712 39.0 35.0 40.0 30.0 41.0 31 36.63369894539499 39.0 35.0 40.0 30.0 41.0 32 36.489948045106345 38.0 35.0 40.0 30.0 41.0 33 36.333701078524825 38.0 35.0 40.0 30.0 41.0 34 36.21378442877539 38.0 35.0 40.0 30.0 41.0 35 36.00508811384106 38.0 35.0 40.0 29.0 41.0 36 35.902399483447034 38.0 35.0 40.0 29.0 41.0 37 35.74128706343041 38.0 35.0 40.0 27.0 41.0 38 35.647648176425655 38.0 35.0 40.0 27.0 41.0 39 35.54875843455114 38.0 35.0 40.0 26.0 41.0 40 35.36328015928009 38.0 34.0 40.0 25.0 41.0 41 35.20016499399728 38.0 34.0 40.0 24.0 41.0 42 35.000264364292555 38.0 34.0 40.0 24.0 41.0 43 34.66130548025021 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 5.0 13 5.0 14 5.0 15 25.0 16 41.0 17 96.0 18 236.0 19 571.0 20 1214.0 21 2405.0 22 4650.0 23 8243.0 24 13723.0 25 21419.0 26 31222.0 27 44492.0 28 60796.0 29 81245.0 30 104111.0 31 130332.0 32 164043.0 33 205526.0 34 256215.0 35 320236.0 36 419017.0 37 583361.0 38 796230.0 39 922808.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.09399672552587 22.097475404893206 14.653954810723077 23.154573058857846 2 18.43167980618718 23.53944720299942 35.919821162229795 22.109051828583603 3 18.7424696322604 24.858512374429957 33.58541015892297 22.813607834386676 4 13.272693325676435 16.70358099769598 37.12305019350364 32.90067548312395 5 11.72360964874542 39.05405998121408 35.77805191558654 13.444278454453961 6 31.278945553179287 38.6870657792527 13.485670760278628 16.548317907289384 7 25.07575606869445 34.086288217477616 21.790903902980464 19.047051810847467 8 26.231960372679353 35.438836336931935 19.111069673532867 19.218133616855848 9 24.11687825796634 14.81348416079197 22.42029704192415 38.64934053931754 10 15.95372594266962 28.179148392255254 34.08597663671576 21.781149028359362 11 32.52795298869465 22.896608155794215 23.983138207878536 20.592300647632598 12 20.82183979811484 27.872049599822446 31.003316417693664 20.30279418436905 13 30.714409148202908 21.945376057606968 26.71244187520807 20.62777291898205 14 20.088905975232205 23.477131050628756 28.2101386941842 28.223824279954833 15 21.847132246619527 30.209911959260577 26.341972349364482 21.60098344475541 16 21.345774833046637 29.121632261359697 26.90487894727886 22.627713958314807 17 21.162733119333275 27.464645769823786 27.290759736958726 24.081861373884212 18 22.417852331331147 26.19277309993857 30.300557993208976 21.088816575521303 19 22.314767034659525 25.14672457914427 31.31935518121657 21.219153204979634 20 23.176455615440315 24.78373299158516 31.31748569664545 20.722325696329076 21 21.868751157941965 25.785297366687175 31.867401773565636 20.47854970180523 22 20.548271889207633 26.06833253720454 31.330404314386907 22.05299125920092 23 21.75936234278054 26.28684652226736 32.30440577594036 19.64938535901174 24 21.695799867362467 26.313738338790394 29.611581025498573 22.378880768348573 25 21.46674007189846 26.58387885931721 30.999889029313277 20.949492039471053 26 21.169875509104987 27.431905822078278 30.74166048098962 20.656558187827116 27 20.071577291322978 27.337760496496756 30.26542127037229 22.325240941807976 28 20.494272546403362 26.830818596961414 30.816727476845358 21.858181379789865 29 21.14931117882267 26.513701284647478 29.95098834616047 22.385999190369375 30 21.176922027873058 26.757669021178625 31.59821996307528 20.467188987873037 31 22.07892436568748 26.547280103674904 31.25411496323467 20.11968056740295 32 21.2225326578582 26.4257396388012 30.455773148113753 21.89595455522685 33 20.91330073559424 26.350552804190908 31.284985426409058 21.451161033805793 34 20.08346529577523 26.76629741150687 32.1587777214003 20.9914595713176 35 19.734135326235844 28.829009990477612 30.571992772285032 20.86486191100151 36 22.069121555564557 26.60027280094088 30.330877198112393 20.999728445382168 37 21.120334167970313 27.239636524263872 30.464257731936524 21.17577157582929 38 20.85469958461491 25.67161832411254 31.85951638351565 21.6141657077569 39 20.29397405203351 25.572775319352303 32.58653017192307 21.546720456691112 40 19.074422982388736 26.244543441908043 32.21788219514878 22.463151380554436 41 20.64469415112578 25.159595261383906 32.35452234309692 21.841188244393404 42 19.349644666108855 27.521281565228357 31.513661737858477 21.61541203080431 43 19.893640708553825 27.247953333830267 30.58076496911875 22.277640988497158 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 274.0 1 466.0 2 658.0 3 1224.5 4 1791.0 5 1791.0 6 3319.0 7 4847.0 8 5676.0 9 6505.0 10 10562.0 11 14619.0 12 14619.0 13 28602.5 14 42586.0 15 69541.0 16 96496.0 17 91377.0 18 86258.0 19 86258.0 20 92870.0 21 99482.0 22 81695.5 23 63909.0 24 72495.0 25 81081.0 26 81081.0 27 90251.0 28 99421.0 29 108015.0 30 116609.0 31 129628.5 32 142648.0 33 142648.0 34 160599.0 35 178550.0 36 196153.0 37 213756.0 38 227777.0 39 241798.0 40 241798.0 41 248355.0 42 254912.0 43 266225.0 44 277538.0 45 287566.5 46 297595.0 47 297595.0 48 377692.0 49 457789.0 50 412590.0 51 367391.0 52 328870.0 53 290349.0 54 290349.0 55 253259.0 56 216169.0 57 179580.0 58 142991.0 59 127409.5 60 111828.0 61 111828.0 62 98808.0 63 85788.0 64 73807.5 65 61827.0 66 51681.0 67 41535.0 68 41535.0 69 35001.5 70 28468.0 71 23514.5 72 18561.0 73 15275.0 74 11989.0 75 11989.0 76 9477.0 77 6965.0 78 5680.0 79 4395.0 80 3349.5 81 2304.0 82 2304.0 83 1771.0 84 1238.0 85 950.5 86 663.0 87 498.5 88 334.0 89 334.0 90 274.5 91 215.0 92 151.0 93 87.0 94 58.5 95 30.0 96 30.0 97 21.5 98 13.0 99 12.0 100 11.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4172273.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.91296738619468 #Duplication Level Percentage of deduplicated Percentage of total 1 71.93923454134084 27.993690874950055 2 13.878939724217862 10.80141457686903 3 5.609249513293742 6.548176301154833 4 2.823527709244702 4.394873666554243 5 1.5788090790677989 3.071807310139666 6 0.9389589275793663 2.1922606875523325 7 0.6341362314404343 1.7273285744712215 8 0.4308257250690867 1.3411765910997635 9 0.32109867912621737 1.124541218572982 >10 1.5316434729498927 11.152734522078537 >50 0.1633397619835666 4.437037125305841 >100 0.1287509873440146 9.777497181346744 >500 0.013150697953311702 3.481536051754345 >1k 0.007347103535740082 5.671367514047001 >5k 3.704421950793319E-4 0.879171158340581 >10k+ 6.174036584655532E-4 5.405386645762894 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 49464 1.185540831100937 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 45586 1.0925938930650032 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 39045 0.9358208343509641 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17827 0.42727309550453674 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 13930 0.3338707702012788 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 12877 0.3086327284911606 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 12748 0.3055408886235393 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 11974 0.28698984941781136 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11370 0.27251332786708826 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 10169 0.24372805902202468 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 7580 0.18167555191139217 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 6142 0.14720992610023362 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 6124 0.14677850658382136 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5858 0.14040308484128436 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5647 0.135345889398896 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5243 0.12566291803053156 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4966 0.11902385102796485 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4725 0.1132476230582227 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4397 0.10538620075915454 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4211 0.10092819908956101 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.3967750911793164E-5 0.0 3 0.0 0.0 0.0 2.3967750911793164E-5 0.0 4 0.0 0.0 0.0 2.3967750911793164E-5 0.0 5 0.0 0.0 0.0 4.793550182358633E-5 0.0 6 0.0 0.0 0.0 4.793550182358633E-5 0.0 7 0.0 0.0 0.0 4.793550182358633E-5 0.0 8 0.0 0.0 0.0 4.793550182358633E-5 0.0 9 0.0 0.0 0.0 1.917420072943453E-4 0.0 10 0.0 0.0 0.0 2.636452600297248E-4 0.0 11 0.0 0.0 0.0 5.033227691476564E-4 0.0 12 0.0 0.0 0.0 9.347422855599334E-4 0.0 13 0.0 0.0 0.0 0.0010545810401188993 0.0 14 0.0 0.0 2.3967750911793164E-5 0.0012942585492368309 0.0 15 0.0 0.0 2.3967750911793164E-5 0.001725678065649108 0.0 16 0.0 0.0 2.3967750911793164E-5 0.0023967750911793166 0.0 17 0.0 0.0 2.3967750911793164E-5 0.0034273883803864224 0.0 18 0.0 0.0 4.793550182358633E-5 0.004194356409563804 0.0 19 0.0 0.0 4.793550182358633E-5 0.005033227691476565 0.0 20 0.0 0.0 4.793550182358633E-5 0.008963938841010644 0.0 21 0.0 0.0 4.793550182358633E-5 0.015938554356342453 0.0 22 0.0 0.0 4.793550182358633E-5 0.02562152572470689 0.0 23 0.0 0.0 7.190325273537949E-5 0.031014269679860353 0.0 24 0.0 0.0 7.190325273537949E-5 0.03765333668242706 0.0 25 0.0 0.0 7.190325273537949E-5 0.0417278543374319 0.0 26 0.0 0.0 7.190325273537949E-5 0.049733083141970814 0.0 27 0.0 0.0 7.190325273537949E-5 0.10121581210050253 0.0 28 0.0 0.0 7.190325273537949E-5 0.2110839822801624 0.0 29 0.0 0.0 7.190325273537949E-5 0.3457348069026164 0.0 30 0.0 0.0 7.190325273537949E-5 0.5644165662218172 0.0 31 0.0 0.0 7.190325273537949E-5 0.8733369077239194 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10975 0.0 29.296583 1 GTATTGG 1225 0.0 19.632652 1 CGTTCGT 70 1.2201734E-4 18.5 24 GTATTAG 935 0.0 16.818182 1 GTATCAA 19280 0.0 16.686462 2 ATTGGAC 1565 0.0 15.840256 3 CGAATTA 230 0.0 15.282607 15 GCCGTAT 85 5.368353E-4 15.235293 30 GGACCCT 2120 0.0 15.183963 6 TATACTG 665 0.0 14.74436 5 TAGGTCG 215 1.2732926E-11 14.627907 21 ATTAGAG 835 0.0 14.622754 3 GTACTAG 355 0.0 14.59155 1 TTAACGG 660 0.0 14.575759 35 GACCCTC 2135 0.0 14.384075 7 TGGACCC 2260 0.0 14.325221 5 TTGGACC 2365 0.0 14.31501 4 TATACCG 260 0.0 14.230769 5 TTATGCG 395 0.0 14.050632 4 GACGCGA 145 8.925381E-7 14.034483 33 >>END_MODULE