##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088088_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4665744 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.522304267015077 31.0 31.0 34.0 30.0 34.0 2 31.71436602608287 31.0 31.0 34.0 30.0 34.0 3 31.779450822848403 31.0 31.0 34.0 30.0 34.0 4 35.496833516798176 37.0 35.0 37.0 33.0 37.0 5 35.38114178574735 37.0 35.0 37.0 33.0 37.0 6 35.420923436862374 37.0 35.0 37.0 33.0 37.0 7 35.28099891464255 37.0 35.0 37.0 32.0 37.0 8 35.30055570987178 37.0 35.0 37.0 32.0 37.0 9 36.847532354968465 39.0 37.0 39.0 33.0 39.0 10 36.690666268873734 39.0 35.0 39.0 32.0 39.0 11 36.75147564889973 39.0 35.0 39.0 32.0 39.0 12 36.62720286410913 39.0 35.0 39.0 32.0 39.0 13 36.66648684539915 39.0 35.0 39.0 32.0 39.0 14 37.62660874664362 39.0 36.0 41.0 32.0 41.0 15 37.63424439917835 39.0 36.0 41.0 32.0 41.0 16 37.5009141093039 39.0 36.0 41.0 32.0 41.0 17 37.53559518053284 39.0 36.0 41.0 32.0 41.0 18 37.5276678274676 39.0 36.0 41.0 32.0 41.0 19 37.56240891056174 39.0 36.0 41.0 32.0 41.0 20 37.4869930712015 39.0 36.0 41.0 32.0 41.0 21 37.40382798541883 39.0 36.0 41.0 32.0 41.0 22 37.31067521064165 39.0 36.0 41.0 31.0 41.0 23 37.12735846630248 39.0 36.0 40.0 31.0 41.0 24 36.980272813939216 39.0 36.0 40.0 31.0 41.0 25 36.83345228542329 39.0 35.0 40.0 30.0 41.0 26 36.95256169219743 39.0 36.0 40.0 31.0 41.0 27 36.87588153143422 39.0 35.0 40.0 31.0 41.0 28 36.78881588874143 39.0 35.0 40.0 30.0 41.0 29 36.67708472646592 39.0 35.0 40.0 30.0 41.0 30 36.45941569018789 38.0 35.0 40.0 30.0 41.0 31 36.2723188413252 38.0 35.0 40.0 30.0 41.0 32 36.125082301986566 38.0 35.0 40.0 30.0 41.0 33 35.96269212369989 38.0 35.0 40.0 29.0 41.0 34 35.82008549976167 38.0 35.0 40.0 29.0 41.0 35 35.606006458991324 38.0 34.0 40.0 27.0 41.0 36 35.490072322870695 38.0 34.0 40.0 27.0 41.0 37 35.32178233525028 38.0 34.0 40.0 26.0 41.0 38 35.20269950515931 38.0 34.0 40.0 25.0 41.0 39 35.1084185073163 38.0 34.0 40.0 25.0 41.0 40 34.909609056990696 38.0 33.0 40.0 24.0 41.0 41 34.7610541855704 38.0 33.0 40.0 24.0 41.0 42 34.54174489641952 38.0 33.0 40.0 23.0 41.0 43 34.19103234125147 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 5.0 14 9.0 15 26.0 16 50.0 17 135.0 18 355.0 19 779.0 20 1659.0 21 3286.0 22 6228.0 23 10914.0 24 18334.0 25 28368.0 26 41238.0 27 58482.0 28 79839.0 29 105009.0 30 133987.0 31 166117.0 32 204850.0 33 252674.0 34 309415.0 35 377538.0 36 480535.0 37 642131.0 38 840295.0 39 903484.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.403759829086205 21.810047872322187 14.650482323933762 23.135709974657846 2 18.65906059140836 23.450536506074915 35.47905757366885 22.411345328847876 3 19.280654918058087 24.589433110775044 33.246444725642895 22.883467245523974 4 13.570032989379616 16.450795414407647 36.3107148613383 33.66845673487443 5 12.136628156195453 38.803114787266516 35.26481521489392 13.795441841644118 6 31.91782489566509 37.676499182124005 13.316311396424666 17.08936452578624 7 25.38628351662672 33.7342983241258 21.484226309887553 19.39519184935993 8 26.627050262509044 35.005221032272665 18.95899132056967 19.40873738464862 9 24.13062096848863 14.703378496548462 22.33485163352297 38.831148901439946 10 16.235095624620637 27.94383918191825 33.69529061174381 22.1257745817173 11 32.76772150379447 22.53824899094335 23.8068140901001 20.887215415162082 12 20.997572948708715 27.49242135873721 30.90201691305824 20.60798877949583 13 31.297109314184407 21.35325041408187 26.821102915204946 20.528537356528776 14 20.299013404936062 23.18830608794653 28.108164528529638 28.404515978587767 15 22.02883398660535 29.799448919614964 26.185877322030528 21.98583977174916 16 21.557097860491275 28.726158143267185 26.970339564279566 22.746404431961974 17 21.42063516558131 27.061171808826202 27.093771111316865 24.424421914275623 18 22.902885370478963 25.555795603016367 30.156198025438176 21.385121001066494 19 22.644127067408757 24.58476075841281 31.28671440181887 21.484397772359564 20 23.487550967219807 24.249080103837674 31.27394044765422 20.9894284812883 21 22.266995360225508 25.246798795647596 31.883253774746322 20.602952069380574 22 20.77405018363631 25.47786590948839 31.391692300306236 22.35639160656907 23 21.99490584995662 25.670139639037203 32.451416108556316 19.883538402449854 24 21.92267728362293 25.703081866471884 29.75392563329664 22.620315216608542 25 21.715293423728347 26.111226848279717 30.982411379621343 21.191068348370592 26 21.518990326087327 26.822667510262026 30.742814007798113 20.915528155852527 27 20.26941469570555 26.941555301791098 30.328282048907955 22.460747953595398 28 20.81175049466923 26.24280286273743 30.720159528683954 22.225287113909378 29 21.21217966523667 26.15098470897675 29.9021335075392 22.73470211824738 30 21.39639465860107 26.292891337372986 31.594510971883583 20.716203032142356 31 22.29648690541101 26.067889708479502 31.33937481353456 20.29624857257492 32 21.617281188166345 25.954402984818714 30.37048324983111 22.05783257718383 33 21.16457739644524 25.91119444187251 31.19648227592427 21.727745885757983 34 20.319203111015092 26.51787153345747 31.914395646224914 21.248529709302524 35 19.900320291897714 28.648357046593215 30.370676145112117 21.080646516396957 36 22.26410193101036 26.14907718897565 30.302584110915642 21.284236769098346 37 21.338761835197133 26.903362036151147 30.355523149148343 21.402352979503377 38 21.18382405892822 25.303617172309494 31.66088838135997 21.851670387402308 39 20.656148301321288 25.190366209547715 32.340522754784665 21.812962734346332 40 19.33322959853777 25.84400258565408 32.03636976225014 22.786398053558017 41 20.96471645251004 24.918619624222845 32.028846846290755 22.087817076976364 42 19.57111234564091 27.18155989698535 31.263074013490666 21.984253743883077 43 20.061023493787914 27.062136285231254 30.340991704645603 22.53584851633523 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 287.0 1 542.0 2 797.0 3 1555.0 4 2313.0 5 2313.0 6 4218.5 7 6124.0 8 6987.0 9 7850.0 10 12460.0 11 17070.0 12 17070.0 13 33806.5 14 50543.0 15 81898.0 16 113253.0 17 106236.5 18 99220.0 19 99220.0 20 107385.5 21 115551.0 22 92967.5 23 70384.0 24 79130.0 25 87876.0 26 87876.0 27 95732.0 28 103588.0 29 111170.5 30 118753.0 31 130906.5 32 143060.0 33 143060.0 34 160778.5 35 178497.0 36 197227.5 37 215958.0 38 229182.0 39 242406.0 40 242406.0 41 251368.5 42 260331.0 43 273252.0 44 286173.0 45 307932.0 46 329691.0 47 329691.0 48 428805.0 49 527919.0 50 480465.0 51 433011.0 52 389957.5 53 346904.0 54 346904.0 55 302799.0 56 258694.0 57 217771.0 58 176848.0 59 158393.5 60 139939.0 61 139939.0 62 123692.5 63 107446.0 64 92307.5 65 77169.0 66 65204.5 67 53240.0 68 53240.0 69 45146.0 70 37052.0 71 30378.0 72 23704.0 73 19218.0 74 14732.0 75 14732.0 76 11719.0 77 8706.0 78 6828.5 79 4951.0 80 3842.5 81 2734.0 82 2734.0 83 2071.0 84 1408.0 85 1076.0 86 744.0 87 579.0 88 414.0 89 414.0 90 325.5 91 237.0 92 169.0 93 101.0 94 74.5 95 48.0 96 48.0 97 29.0 98 10.0 99 9.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4665744.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.189108236093425 #Duplication Level Percentage of deduplicated Percentage of total 1 70.77910772646453 27.029910058200706 2 13.858671788040294 10.585006338439305 3 5.910004296472264 6.770933812612695 4 3.055523233373822 4.667508299088443 5 1.6781148595229227 3.2042855001458808 6 1.0518036814466314 2.410046678033216 7 0.7125901577829113 1.904922786448255 8 0.5095166605676151 1.5566389518807626 9 0.3569617026225476 1.22688441878334 >10 1.7848707897277276 12.38905760091113 >50 0.16664726600667443 4.4240053124251855 >100 0.11744489540207602 8.72241857023032 >500 0.011088167314022365 2.9272884809835786 >1k 0.006472787900367844 5.056174676768593 >5k 6.191362339482273E-4 1.5203044650856419 >10k+ 5.628511217711157E-4 5.604614049962894 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 56943 1.2204484429492917 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 54187 1.161379621342277 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 44083 0.9448225191952239 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20826 0.44635968025678224 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 15740 0.33735241367721847 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 15113 0.32391404243353256 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 14562 0.31210456467392983 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 13646 0.2924721116289278 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 13345 0.2860208361195985 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 12298 0.2635806850954532 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 8491 0.18198598122828855 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 7356 0.15765974301204694 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 7288 0.15620231199997256 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 7163 0.15352321087483584 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6667 0.14289253761029325 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 6433 0.13787726030403724 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 5718 0.1225528018682551 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5560 0.11916641804608226 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 5524 0.11839483692204288 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 5288 0.1133366939977847 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 5241 0.11232935197473329 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4889 0.10478500320634822 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4731 0.10139861938417538 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 4702 0.10077706792314366 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.143280900109393E-5 0.0 2 0.0 0.0 0.0 4.286561800218786E-5 0.0 3 0.0 0.0 0.0 4.286561800218786E-5 0.0 4 0.0 0.0 0.0 4.286561800218786E-5 0.0 5 0.0 0.0 0.0 4.286561800218786E-5 0.0 6 0.0 0.0 0.0 4.286561800218786E-5 0.0 7 0.0 0.0 0.0 4.286561800218786E-5 0.0 8 2.143280900109393E-5 0.0 0.0 6.429842700328179E-5 0.0 9 4.286561800218786E-5 0.0 0.0 2.3576089901203323E-4 0.0 10 4.286561800218786E-5 0.0 0.0 4.7152179802406645E-4 0.0 11 4.286561800218786E-5 0.0 0.0 9.001779780459451E-4 0.0 12 4.286561800218786E-5 0.0 0.0 0.0013502669670689177 0.0 13 6.429842700328179E-5 0.0 0.0 0.001543162248078763 0.0 14 6.429842700328179E-5 0.0 0.0 0.0018003559560918901 0.0 15 6.429842700328179E-5 0.0 0.0 0.0023576089901203323 0.0 16 6.429842700328179E-5 0.0 0.0 0.003043458878155338 0.0 17 6.429842700328179E-5 0.0 0.0 0.004500889890229725 0.0 18 6.429842700328179E-5 0.0 0.0 0.005208172587265825 0.0 19 8.573123600437572E-5 0.0 0.0 0.006408409891327085 0.0 20 8.573123600437572E-5 0.0 0.0 0.010566374837539307 0.0 21 8.573123600437572E-5 0.0 0.0 0.01772493304390468 0.0 22 8.573123600437572E-5 0.0 0.0 0.028055546982431956 0.0 23 8.573123600437572E-5 0.0 0.0 0.03412103192974154 0.0 24 8.573123600437572E-5 0.0 0.0 0.04260842429417473 0.0 25 8.573123600437572E-5 0.0 0.0 0.046980717330397895 0.0 26 8.573123600437572E-5 0.0 0.0 0.056454018908881416 0.0 27 8.573123600437572E-5 0.0 0.0 0.11271514253675298 0.0 28 8.573123600437572E-5 0.0 0.0 0.22581607563552566 0.0 29 8.573123600437572E-5 0.0 0.0 0.3636504703215607 0.0 30 8.573123600437572E-5 0.0 0.0 0.5912454691041772 0.0 31 8.573123600437572E-5 0.0 0.0 0.8929765542215775 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14495 0.0 28.729563 1 GTATTGG 1705 0.0 18.228739 1 ATTGGAC 1765 0.0 17.294617 3 GTATCAA 24455 0.0 17.02106 2 TTAACGG 540 0.0 16.787037 35 GGACCCT 2745 0.0 15.366121 6 GTACTAG 495 0.0 15.323231 1 TTGGACC 2835 0.0 15.269841 4 GTATTAG 960 0.0 15.223959 1 TATACCG 305 0.0 15.163934 5 TGCGACG 265 0.0 14.6603775 22 ATTAGAG 915 0.0 14.557378 3 ACGTTTA 255 0.0 14.509804 26 TGGACCC 2855 0.0 14.450088 5 AACGGCC 670 0.0 14.358209 37 TACTCCG 1080 0.0 14.217592 5 TAACGGC 640 0.0 14.1640625 36 CTAATAC 920 0.0 14.076087 3 TCCGGTC 910 0.0 14.0274725 8 CGAATTA 345 0.0 13.405797 15 >>END_MODULE