##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088085_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1812004 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.408999097132234 31.0 31.0 34.0 30.0 34.0 2 31.627806009258258 31.0 31.0 34.0 30.0 34.0 3 31.693375952812467 31.0 31.0 34.0 30.0 34.0 4 35.42188207090051 37.0 35.0 37.0 33.0 37.0 5 35.289599802207945 37.0 35.0 37.0 33.0 37.0 6 35.32138891525626 37.0 35.0 37.0 33.0 37.0 7 35.18707740159514 37.0 35.0 37.0 32.0 37.0 8 35.220342780700264 37.0 35.0 37.0 32.0 37.0 9 36.745928265059014 39.0 35.0 39.0 32.0 39.0 10 36.547066673142005 38.0 35.0 39.0 32.0 39.0 11 36.613476570691894 38.0 35.0 39.0 32.0 39.0 12 36.47052379575321 38.0 35.0 39.0 32.0 39.0 13 36.50069922582952 38.0 35.0 39.0 32.0 39.0 14 37.45997139079163 39.0 36.0 41.0 32.0 41.0 15 37.46508396228706 39.0 36.0 41.0 32.0 41.0 16 37.33112509685409 39.0 36.0 41.0 32.0 41.0 17 37.33635301025826 39.0 36.0 41.0 32.0 41.0 18 37.30510914986942 39.0 36.0 40.0 32.0 41.0 19 37.33932209862672 39.0 36.0 40.0 31.0 41.0 20 37.248551327701264 39.0 36.0 40.0 31.0 41.0 21 37.15786278617487 39.0 36.0 40.0 31.0 41.0 22 37.034665486389656 39.0 36.0 40.0 31.0 41.0 23 36.81801530239448 39.0 36.0 40.0 30.0 41.0 24 36.66069225012748 39.0 35.0 40.0 30.0 41.0 25 36.51175990781477 38.0 35.0 40.0 30.0 41.0 26 36.67646318661548 39.0 35.0 40.0 30.0 41.0 27 36.59814934183368 39.0 35.0 40.0 30.0 41.0 28 36.523164408025586 39.0 35.0 40.0 30.0 41.0 29 36.436369897638194 39.0 35.0 40.0 30.0 41.0 30 36.20782404453853 38.0 35.0 40.0 30.0 41.0 31 36.028754351535646 38.0 35.0 40.0 29.0 41.0 32 35.85660296555637 38.0 35.0 40.0 28.0 41.0 33 35.692282136242525 38.0 34.0 40.0 27.0 41.0 34 35.550062251518206 38.0 34.0 40.0 27.0 41.0 35 35.354430233045846 38.0 34.0 40.0 26.0 41.0 36 35.263424363301624 38.0 34.0 40.0 26.0 41.0 37 35.092606859587505 38.0 34.0 40.0 25.0 41.0 38 35.00487636892634 38.0 33.0 40.0 25.0 41.0 39 34.909168522806794 38.0 33.0 40.0 24.0 41.0 40 34.74276215725793 38.0 33.0 40.0 24.0 41.0 41 34.601951761695894 38.0 33.0 40.0 23.0 41.0 42 34.39843510279227 38.0 33.0 40.0 23.0 41.0 43 34.0694970872029 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 4.0 14 3.0 15 14.0 16 22.0 17 60.0 18 187.0 19 417.0 20 902.0 21 1694.0 22 3231.0 23 5289.0 24 8485.0 25 12720.0 26 18203.0 27 25335.0 28 33789.0 29 43682.0 30 54567.0 31 67460.0 32 82090.0 33 100521.0 34 122631.0 35 149921.0 36 190526.0 37 254157.0 38 340756.0 39 295337.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.6030030838784 22.524177650821965 14.476402921847855 23.396416343451783 2 19.523080523001052 23.65977117048307 34.43524407230889 22.38190423420699 3 19.718223580080398 24.787252125271248 32.598051659930114 22.896472634718247 4 14.495994490078386 17.069498742828383 35.948265014867516 32.486241752225716 5 12.5016280317262 38.85830274105355 35.15803497122523 13.482034255995021 6 32.421396420758455 38.04837075414845 13.440091743726834 16.090141081366266 7 25.992768227884707 33.36135019569493 21.53521736155108 19.11066421486928 8 26.630073664296543 35.37955766102062 18.982187677289897 19.00818099739294 9 24.613577011971277 14.725574557230559 21.69068059452407 38.97016783627409 10 16.26387138218238 28.206449875386593 33.79308213447653 21.73659660795451 11 33.50511367524575 22.710104392705535 23.10265319502606 20.682128737022655 12 20.852602974386368 27.557279123004143 30.696124291116355 20.89399361149313 13 31.109202849441836 21.541674300939732 26.063904936192195 21.28521791342624 14 20.46562811119622 23.06435305882327 27.523283613060457 28.94673521692005 15 22.657014002176595 29.903024496634668 25.28311195781025 22.15684954337849 16 22.191783241096598 28.620632184034918 26.359544460166756 22.828040114701732 17 21.7420601720526 27.33448712033748 26.98664020609226 23.936812501517657 18 22.846693495157847 26.07416981419467 29.397396473738468 21.681740216909013 19 22.787256540272537 25.256732325094205 30.3211251189291 21.63488601570416 20 23.576769146204978 25.023896194489637 30.24275884600696 21.156575813298424 21 22.585270231191544 25.680848386648155 30.653133216041468 21.080748166118838 22 21.429919580751477 26.042712929993534 30.200595583674207 22.326771905580785 23 22.439685563608027 26.167105591378387 30.8400533332156 20.55315551179799 24 22.35867028991106 26.140229271017063 28.759152849552212 22.741947589519672 25 22.178814174803147 26.484599371745315 29.83508866426343 21.501497789188104 26 22.058836514709682 27.015172151937854 29.580894964911774 21.34509636844069 27 21.186377072015294 27.002644585773538 29.308268635168577 22.50270970704259 28 21.601166443341185 26.567491020991124 29.712793128491988 22.118549407175703 29 21.892777278637354 26.28399275056788 29.169361657038284 22.65386831375648 30 21.995922746307404 26.652590170882622 30.248498347685764 21.102988735124207 31 22.648294374626104 26.32610082538449 30.05826697954309 20.967337820446314 32 21.933505665550406 26.41362822598626 29.398334661512887 22.25453144695045 33 21.833340323752047 26.293264253279798 30.000320087593625 21.873075335374537 34 21.048904969304704 26.691552557279124 30.62901627148726 21.630526201928916 35 20.824733278734485 28.27195745704756 29.47278262078892 21.430526643429044 36 22.70811764212441 26.33984251690394 29.314560012008805 21.63747982896285 37 21.83582376197845 26.846187977509985 29.52603857386628 21.791949686645285 38 21.68196096697358 25.69883951691056 30.575760318409895 22.043439197705965 39 21.20249182672886 25.559159913554275 31.284754338290643 21.953593921426222 40 20.230198167332965 26.024887362279554 30.970185496279257 22.774728974108225 41 21.46501884101801 25.15242791958517 31.03033988887442 22.352213350522405 42 20.296478374219927 26.945580694082356 30.363895443939416 22.394045487758305 43 20.788585455661245 26.71760106489831 29.70639137661948 22.787422102820965 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 115.0 1 206.5 2 298.0 3 448.5 4 599.0 5 599.0 6 1197.5 7 1796.0 8 2136.0 9 2476.0 10 3938.0 11 5400.0 12 5400.0 13 10942.5 14 16485.0 15 26322.0 16 36159.0 17 34147.5 18 32136.0 19 32136.0 20 36213.5 21 40291.0 22 33785.5 23 27280.0 24 30734.5 25 34189.0 26 34189.0 27 38196.0 28 42203.0 29 45594.0 30 48985.0 31 54102.0 32 59219.0 33 59219.0 34 66921.5 35 74624.0 36 81236.5 37 87849.0 38 93302.0 39 98755.0 40 98755.0 41 101956.5 42 105158.0 43 109286.5 44 113415.0 45 119113.0 46 124811.0 47 124811.0 48 153949.5 49 183088.0 50 168423.0 51 153758.0 52 140522.0 53 127286.0 54 127286.0 55 114530.5 56 101775.0 57 89434.0 58 77093.0 59 70451.0 60 63809.0 61 63809.0 62 56481.5 63 49154.0 64 42737.5 65 36321.0 66 30209.0 67 24097.0 68 24097.0 69 20302.5 70 16508.0 71 13522.5 72 10537.0 73 8729.0 74 6921.0 75 6921.0 76 5469.5 77 4018.0 78 3223.0 79 2428.0 80 1869.5 81 1311.0 82 1311.0 83 1051.0 84 791.0 85 603.0 86 415.0 87 317.0 88 219.0 89 219.0 90 186.5 91 154.0 92 102.5 93 51.0 94 34.5 95 18.0 96 18.0 97 11.5 98 5.0 99 4.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1812004.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.35208765465433 #Duplication Level Percentage of deduplicated Percentage of total 1 78.04230390979376 39.29592927237108 2 12.331352001673197 12.41818633777292 3 4.090877127699817 6.179526111550851 4 1.8559620091847477 3.7380624708071517 5 0.9214668012328848 2.3198888573266077 6 0.5671258375272874 1.7133581929435937 7 0.36178365358882597 1.2751593566267965 8 0.25779133847925406 1.0384265657374452 9 0.19263454606198022 0.8729596393764638 >10 1.1783642082082197 11.486088603546337 >50 0.11353882151953737 3.9603382313076105 >100 0.07770377107023739 7.283240335867126 >500 0.005479502385741479 2.016585145804297 >1k 0.003178111383730058 3.336566901797856 >5k 1.0959004771482959E-4 0.3712569396900071 >10k+ 3.2877014314448876E-4 2.694427037473745 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 17928 0.9894017894000234 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 17733 0.9786402237522653 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 13168 0.7267092125624447 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6728 0.37130160860572053 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4723 0.26065063874031186 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4507 0.24873013525356455 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4505 0.24861976022127985 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4004 0.22097081463396331 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3845 0.21219599956732987 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3533 0.19497749453091714 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2441 0.1347127269034726 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2246 0.12395116125571468 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2063 0.1138518458016649 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2004 0.11059578234926634 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1968 0.1086090317681418 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1932 0.10662228118701726 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1847 0.10193134231491763 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 5.518751614234847E-5 0.0 0.0 0.0 0.0 7 5.518751614234847E-5 0.0 0.0 0.0 0.0 8 5.518751614234847E-5 0.0 0.0 0.0 0.0 9 5.518751614234847E-5 0.0 0.0 1.1037503228469694E-4 0.0 10 5.518751614234847E-5 0.0 0.0 2.2075006456939388E-4 0.0 11 5.518751614234847E-5 0.0 0.0 3.311250968540908E-4 0.0 12 5.518751614234847E-5 0.0 0.0 5.518751614234847E-4 0.0 13 5.518751614234847E-5 0.0 0.0 6.622501937081816E-4 0.0 14 5.518751614234847E-5 0.0 0.0 8.278127421352271E-4 0.0 15 5.518751614234847E-5 0.0 0.0 9.933752905622725E-4 0.0 16 5.518751614234847E-5 0.0 0.0 0.0014900629358434087 0.0 17 5.518751614234847E-5 0.0 0.0 0.002317875677978636 0.0 18 5.518751614234847E-5 0.0 0.0 0.002759375807117424 0.0 19 5.518751614234847E-5 0.0 0.0 0.0038079386138220447 0.0 20 5.518751614234847E-5 0.0 0.0 0.005629126646519544 0.0 21 5.518751614234847E-5 0.0 0.0 0.010099315454049771 0.0 22 5.518751614234847E-5 0.0 0.0 0.017880755230120903 0.0 23 5.518751614234847E-5 0.0 0.0 0.02168869384394295 0.0 24 5.518751614234847E-5 0.0 0.0 0.02781450813574363 0.0 25 5.518751614234847E-5 0.0 0.0 0.032339884459416206 0.0 26 5.518751614234847E-5 0.0 0.0 0.0398453866547756 0.0 27 5.518751614234847E-5 0.0 0.0 0.08377464950408497 0.0 28 5.518751614234847E-5 0.0 0.0 0.1744477385259635 0.0 29 5.518751614234847E-5 0.0 0.0 0.2800766444224185 0.0 30 5.518751614234847E-5 0.0 0.0 0.44861931872115074 0.0 31 5.518751614234847E-5 0.0 0.0 0.6832214498422741 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4325 0.0 29.942198 1 TAGGGCG 55 5.144666E-4 20.181818 5 CAATGCG 120 5.178663E-9 18.5 19 GTATCAA 7390 0.0 17.573748 2 GTATTGG 380 0.0 17.526316 1 CGTCGAG 90 4.4482327E-5 16.444445 10 TGCGACG 135 2.2215318E-8 16.444443 22 CCGAGTT 170 8.54925E-11 16.323528 13 GACGTCG 95 7.063268E-5 15.578948 36 ATGCGAC 185 3.0559022E-10 15.0 21 TAATACT 445 0.0 14.966293 4 GTGGTAT 645 0.0 14.627907 1 AATGCGA 165 1.6467311E-8 14.575757 20 GTACTAG 260 0.0 14.230769 1 GCGACGA 160 1.7849197E-7 13.875 23 GGCGTCG 80 0.0063004694 13.875 8 GCGTCGG 80 0.0063004694 13.875 9 AAGACCG 240 5.456968E-12 13.874999 5 TATACGG 120 3.302424E-5 13.874999 2 CGAGTTC 190 7.1322575E-9 13.631579 14 >>END_MODULE