##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088078_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3492485 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.62792939697665 31.0 31.0 34.0 30.0 34.0 2 31.825726094743427 31.0 31.0 34.0 30.0 34.0 3 31.881566277306845 31.0 31.0 34.0 30.0 34.0 4 35.57302436517265 37.0 35.0 37.0 33.0 37.0 5 35.48549299424335 37.0 35.0 37.0 33.0 37.0 6 35.53451195924965 37.0 35.0 37.0 33.0 37.0 7 35.379174141048566 37.0 35.0 37.0 33.0 37.0 8 35.44095479293397 37.0 35.0 37.0 33.0 37.0 9 36.97689925654656 39.0 37.0 39.0 33.0 39.0 10 36.84236839957795 39.0 37.0 39.0 32.0 39.0 11 36.89618623988363 39.0 37.0 39.0 33.0 39.0 12 36.764827050080385 39.0 37.0 39.0 32.0 39.0 13 36.794117369151195 39.0 37.0 39.0 32.0 39.0 14 37.742500826775206 40.0 37.0 41.0 32.0 41.0 15 37.760702766082034 39.0 37.0 41.0 32.0 41.0 16 37.64299660556881 39.0 36.0 41.0 32.0 41.0 17 37.70538857002965 39.0 37.0 41.0 32.0 41.0 18 37.71012932052679 39.0 37.0 41.0 32.0 41.0 19 37.7682146093684 40.0 37.0 41.0 32.0 41.0 20 37.71055108325447 40.0 37.0 41.0 32.0 41.0 21 37.63143692814715 39.0 37.0 41.0 32.0 41.0 22 37.51565547167704 39.0 36.0 41.0 32.0 41.0 23 37.301834939878056 39.0 36.0 41.0 31.0 41.0 24 37.14279259610277 39.0 36.0 41.0 31.0 41.0 25 36.978822242615216 39.0 36.0 41.0 31.0 41.0 26 37.13456722076115 39.0 36.0 41.0 31.0 41.0 27 37.05456143691383 39.0 36.0 41.0 31.0 41.0 28 36.96438839393727 39.0 35.0 41.0 31.0 41.0 29 36.853202232794125 39.0 35.0 41.0 31.0 41.0 30 36.57128634768653 39.0 35.0 40.0 30.0 41.0 31 36.30042018791777 38.0 35.0 40.0 30.0 41.0 32 36.11540751069797 38.0 35.0 40.0 30.0 41.0 33 35.91383670939174 38.0 35.0 40.0 30.0 41.0 34 35.76879356675834 38.0 35.0 40.0 29.0 41.0 35 35.53757596668275 38.0 34.0 40.0 27.0 41.0 36 35.40690854792504 38.0 34.0 40.0 27.0 41.0 37 35.19517134647679 38.0 34.0 40.0 25.0 41.0 38 35.05090329664981 38.0 34.0 40.0 25.0 41.0 39 34.88735069728288 38.0 34.0 40.0 24.0 41.0 40 34.64221177757385 38.0 33.0 40.0 23.0 41.0 41 34.409735188554855 38.0 33.0 40.0 22.0 41.0 42 34.135638377831256 38.0 33.0 40.0 20.0 41.0 43 33.75815558262956 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 3.0 12 1.0 13 3.0 14 7.0 15 12.0 16 52.0 17 100.0 18 211.0 19 587.0 20 1202.0 21 2499.0 22 4821.0 23 8371.0 24 13674.0 25 21382.0 26 31058.0 27 43612.0 28 58676.0 29 76799.0 30 96579.0 31 118876.0 32 147500.0 33 183225.0 34 226966.0 35 276384.0 36 360687.0 37 501620.0 38 626612.0 39 690965.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.18027278570989 22.175814642009918 15.509357949998353 22.134554622281843 2 18.72154067948753 24.25138547481235 35.452722058935116 21.57435178676501 3 19.362803276177278 24.435953196649375 34.546232839940615 21.65501068723273 4 13.499671437386274 16.739799884609383 36.055645192463246 33.704883485541096 5 11.72780985458778 39.41643271195152 34.87937671886923 13.976380714591471 6 31.283341231243654 37.757957442909564 12.905538606465026 18.053162719381756 7 24.35684047318743 34.963299770793576 21.05137173101674 19.628488025002255 8 27.078656028587094 34.815697132557474 18.537574248708296 19.568072590147132 9 23.904469167369367 14.890973046412512 23.03004880479086 38.174508981427266 10 16.413671068021767 28.800381390328088 32.90024151857489 21.88570602307526 11 31.86178322884708 23.167085900154188 24.017111025530532 20.954019845468196 12 21.06296805856002 28.399492052220698 30.92250933074874 19.615030558470544 13 32.121884560706775 21.774610341919864 26.940072756217994 19.163432341155367 14 19.774229524249925 24.45510861177643 29.03402591564459 26.736635948329056 15 21.639634815897562 30.609809347785315 26.66611309712139 21.08444273919573 16 20.552013823967748 29.335043672342188 27.83662635630504 22.276316147385028 17 20.75719723921506 27.754678974999177 27.59015428842214 23.897969497363626 18 22.702803304810185 25.703675176843994 30.870311540350208 20.72320997799561 19 21.981941225230745 24.999563348160407 32.858294309066466 20.160201117542382 20 23.043534904230082 24.270254560864256 32.63358325089442 20.05262728401124 21 21.667036508388726 25.40159800256837 33.48234852834013 19.449016960702767 22 19.704680191897747 25.797476581860767 32.984622697019454 21.51322052922203 23 21.385660926245926 25.90018282111448 33.7451986193212 18.968957633318396 24 20.815407940191584 25.99063417595208 31.351888411832835 21.8420694720235 25 20.74436969664866 26.743822808115137 32.44288808684934 20.068919408386865 26 20.332141727165613 27.605444261034766 32.26361745290245 19.798796558897173 27 18.96669563362477 27.518371589283845 31.91813279083518 21.596799986256205 28 19.76019939956793 27.005298519535515 31.834381536355917 21.400120544540634 29 19.94811717158413 26.657666389404678 31.089925940984713 22.30429049802648 30 20.389436175101682 27.187203380973717 33.083578025388796 19.3397824185358 31 21.665547597197985 26.859413855750276 32.3979057891444 19.077132757907336 32 20.932373367387406 26.84063066842091 31.42327025026593 20.803725713925758 33 20.225970906102674 26.838683630709937 32.144361393105484 20.790984070081905 34 19.153095861542713 27.284211671632093 33.12598336141745 20.436709105407754 35 18.67638658433751 29.693928535126133 31.73725871406749 19.89242616646886 36 21.49870364511229 26.86840458870976 31.50676380857756 20.12612795760039 37 20.46674502539023 27.892718222125506 31.435009742346782 20.20552701013748 38 20.089477835982116 26.22525222012407 32.982704292216006 20.70256565167782 39 19.648846022244907 25.71080477081505 33.80867777528035 20.831671431659693 40 18.148023541976556 26.217320904742614 33.34173231953752 22.29292323374331 41 19.95653524639333 25.414396912227254 33.378239276618224 21.250828564761196 42 18.584016824696455 27.760262391964464 32.40460588950275 21.251114893836338 43 18.816716464064985 27.970628363471857 31.411530758185073 21.801124414278085 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 521.0 1 648.0 2 775.0 3 1403.5 4 2032.0 5 2032.0 6 3667.0 7 5302.0 8 6298.5 9 7295.0 10 12262.0 11 17229.0 12 17229.0 13 33584.0 14 49939.0 15 81885.0 16 113831.0 17 104753.5 18 95676.0 19 95676.0 20 104484.0 21 113292.0 22 89759.0 23 66226.0 24 73642.0 25 81058.0 26 81058.0 27 86502.5 28 91947.0 29 94597.0 30 97247.0 31 104154.0 32 111061.0 33 111061.0 34 122295.0 35 133529.0 36 144554.0 37 155579.0 38 160755.0 39 165931.0 40 165931.0 41 170191.0 42 174451.0 43 184319.0 44 194187.0 45 213463.5 46 232740.0 47 232740.0 48 321534.5 49 410329.0 50 368883.5 51 327438.0 52 288577.0 53 249716.0 54 249716.0 55 215228.0 56 180740.0 57 149297.5 58 117855.0 59 104748.5 60 91642.0 61 91642.0 62 79616.0 63 67590.0 64 58228.5 65 48867.0 66 40579.0 67 32291.0 68 32291.0 69 27326.5 70 22362.0 71 18208.0 72 14054.0 73 11380.0 74 8706.0 75 8706.0 76 6859.5 77 5013.0 78 3920.5 79 2828.0 80 2185.5 81 1543.0 82 1543.0 83 1167.0 84 791.0 85 588.5 86 386.0 87 307.0 88 228.0 89 228.0 90 189.5 91 151.0 92 105.5 93 60.0 94 43.5 95 27.0 96 27.0 97 19.5 98 12.0 99 10.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3492485.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.03092898288015 #Duplication Level Percentage of deduplicated Percentage of total 1 70.0033800745564 24.522834359533526 2 13.244082368794668 9.279050178093222 3 5.9578399117589855 6.261260005205939 4 3.2685791739533427 4.580054596707224 5 1.9176610924508748 3.3588724771439473 6 1.2186696156862238 2.5614677256418767 7 0.882023438184576 2.162867029699576 8 0.5968297131242317 1.6725999436262158 9 0.4353357412806706 1.3725193892861391 >10 2.138809482692843 13.41343704366558 >50 0.17960891403803703 4.412752573974699 >100 0.13609516153525397 9.16396675431704 >500 0.011322074117768626 2.7350014370011726 >1k 0.008368489565206753 6.167455400419211 >5k 6.563521227613138E-4 1.5387814013693366 >10k+ 7.383961381064781E-4 6.797079684315327 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 57262 1.6395775500825345 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 53930 1.5441727022449632 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 42087 1.2050731785533797 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20508 0.5872036673027944 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 13815 0.3955636173097379 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 13037 0.37328721526363035 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 12896 0.36924997530411724 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 11606 0.3323135246106998 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 11355 0.3251266648246163 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8646 0.24756011836843966 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 8015 0.22949275372693081 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6692 0.19161141708554225 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 6413 0.18362283588905895 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 6047 0.17314319173883352 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5967 0.17085255913769137 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 5906 0.16910595177932045 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5854 0.16761704058857804 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 4833 0.13838284201650114 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4792 0.13720889280841578 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 4674 0.13383020972173107 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4645 0.13299985540381706 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 4469 0.1279604636813043 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 4362 0.12489674257727663 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 4206 0.12043000900504941 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4133 0.11833980675650718 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAAAA 3894 0.11149654186059497 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 3682 0.10542636546756823 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 3654 0.10462464405716847 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3630 0.10393745427682581 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 3609 0.103336163219026 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.8632907514277085E-5 0.0 3 0.0 0.0 0.0 5.726581502855417E-5 0.0 4 0.0 0.0 0.0 5.726581502855417E-5 0.0 5 2.8632907514277085E-5 0.0 0.0 5.726581502855417E-5 0.0 6 2.8632907514277085E-5 0.0 0.0 5.726581502855417E-5 0.0 7 2.8632907514277085E-5 0.0 0.0 5.726581502855417E-5 0.0 8 5.726581502855417E-5 0.0 0.0 5.726581502855417E-5 0.0 9 5.726581502855417E-5 0.0 0.0 1.1453163005710834E-4 0.0 10 5.726581502855417E-5 0.0 0.0 2.2906326011421668E-4 0.0 11 5.726581502855417E-5 0.0 0.0 4.867594277427104E-4 0.0 12 5.726581502855417E-5 0.0 0.0 7.730885028854812E-4 0.0 13 5.726581502855417E-5 0.0 0.0 8.589872254283125E-4 0.0 14 5.726581502855417E-5 0.0 0.0 0.001030784670513975 0.0 15 5.726581502855417E-5 0.0 0.0 0.001317113745656746 0.0 16 5.726581502855417E-5 0.0 0.0 0.0018325060809137334 0.0 17 5.726581502855417E-5 0.0 0.0 0.0028060249363991542 0.0 18 5.726581502855417E-5 0.0 0.0 0.003521847624256081 0.0 19 8.589872254283125E-5 0.0 0.0 0.004352201942170117 0.0 20 8.589872254283125E-5 0.0 0.0 0.008017214103997583 0.0 21 8.589872254283125E-5 0.0 0.0 0.013428833624195953 0.0 22 8.589872254283125E-5 0.0 0.0 0.022047338785993353 0.0 23 8.589872254283125E-5 0.0 0.0 0.026370907820649193 0.0 24 8.589872254283125E-5 0.0 0.0 0.033987261219446896 0.0 25 8.589872254283125E-5 0.0 0.0 0.03962794399975948 0.0 26 8.589872254283125E-5 0.0 0.0 0.049792626167327846 0.0 27 8.589872254283125E-5 0.0 0.0 0.11765261697616454 0.0 28 8.589872254283125E-5 0.0 0.0 0.24916356118923919 0.0 29 8.589872254283125E-5 0.0 0.0 0.41821224715353106 0.0 30 8.589872254283125E-5 0.0 0.0 0.7005613481518174 0.0 31 8.589872254283125E-5 0.0 0.0 1.0285799366353756 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15240 0.0 26.912403 1 GTATTGG 890 0.0 20.786518 1 ATTGGAC 935 0.0 19.786095 3 TTGGACC 1540 0.0 18.620129 4 CGCGAAT 60 9.2419545E-4 18.5 35 AGCCGTC 280 0.0 17.178572 12 GTATCAA 24680 0.0 16.655998 2 TATTGGA 1205 0.0 15.659751 2 GCCGTCA 300 0.0 15.416667 13 CTAGTAC 410 0.0 15.341463 3 TGGACCC 1860 0.0 15.3172035 5 TTTTTAC 2485 0.0 15.187122 1 GGACCCT 1795 0.0 15.047354 6 GACCCTC 1765 0.0 14.988668 7 TATACCG 260 0.0 14.9423065 5 GTACTAG 360 0.0 14.902778 1 TCACGTT 300 0.0 14.8 24 TATACTG 430 0.0 14.627908 5 TAGGACG 165 1.6483682E-8 14.575757 4 CTACGTT 90 8.279973E-4 14.388888 4 >>END_MODULE