##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3203955_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2526758 Sequences flagged as poor quality 0 Sequence length 75 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.440327486842826 35.0 31.0 35.0 15.0 35.0 2 31.714850413058947 35.0 31.0 35.0 27.0 35.0 3 31.809775213930262 35.0 31.0 35.0 27.0 35.0 4 31.980324985613976 35.0 31.0 35.0 27.0 35.0 5 32.09893586960049 35.0 32.0 35.0 27.0 35.0 6 35.766429551227304 39.0 36.0 40.0 27.0 40.0 7 35.50957076221783 39.0 35.0 40.0 27.0 40.0 8 35.56907309683001 39.0 35.0 40.0 27.0 40.0 9 35.510680484636836 39.0 35.0 40.0 16.0 40.0 10 35.61337532126147 39.0 35.0 40.0 27.0 40.0 11 35.684703085930664 39.0 35.0 40.0 27.0 40.0 12 35.27417188349656 39.0 35.0 40.0 16.0 40.0 13 35.335996165837805 39.0 35.0 40.0 16.0 40.0 14 35.31521855278582 39.0 35.0 40.0 16.0 40.0 15 35.37396220769856 39.0 35.0 40.0 16.0 40.0 16 35.51926896046238 39.0 35.0 40.0 27.0 40.0 17 35.559255773603965 39.0 35.0 40.0 27.0 40.0 18 35.61109057535387 39.0 35.0 40.0 27.0 40.0 19 35.652221542387515 39.0 35.0 40.0 27.0 40.0 20 35.594148311789255 39.0 35.0 40.0 27.0 40.0 21 35.62058337205225 39.0 35.0 40.0 27.0 40.0 22 35.67661762622301 39.0 35.0 40.0 27.0 40.0 23 35.694145224829605 39.0 36.0 40.0 27.0 40.0 24 35.721863352169066 39.0 36.0 40.0 27.0 40.0 25 35.744642739827086 39.0 36.0 40.0 27.0 40.0 26 35.752913812878006 39.0 36.0 40.0 27.0 40.0 27 35.74902859711931 39.0 36.0 40.0 27.0 40.0 28 35.6177461395195 39.0 35.0 40.0 27.0 40.0 29 35.70603437289998 39.0 36.0 40.0 27.0 40.0 30 35.72218550411238 39.0 36.0 40.0 27.0 40.0 31 35.72134529701697 39.0 36.0 40.0 27.0 40.0 32 35.65474018485347 39.0 36.0 40.0 27.0 40.0 33 35.54555481767546 39.0 35.0 40.0 27.0 40.0 34 35.58267946514862 39.0 35.0 40.0 27.0 40.0 35 35.57807870797283 39.0 35.0 40.0 27.0 40.0 36 35.59861569647746 39.0 35.0 40.0 27.0 40.0 37 35.57210979444806 39.0 35.0 40.0 27.0 40.0 38 35.58275822219619 39.0 35.0 40.0 27.0 40.0 39 35.542582629598876 39.0 35.0 40.0 27.0 40.0 40 35.46230466075501 39.0 35.0 40.0 27.0 40.0 41 35.433480768637125 39.0 35.0 40.0 27.0 40.0 42 35.451212581497714 39.0 35.0 40.0 27.0 40.0 43 35.405150790063786 39.0 35.0 40.0 27.0 40.0 44 35.28266141830757 39.0 35.0 40.0 16.0 40.0 45 35.31137133037671 39.0 35.0 40.0 27.0 40.0 46 35.274999030378055 39.0 35.0 40.0 16.0 40.0 47 35.20011651293871 39.0 35.0 40.0 16.0 40.0 48 35.24558267946515 39.0 35.0 40.0 16.0 40.0 49 35.20423641678388 39.0 35.0 40.0 16.0 40.0 50 35.094828630205186 39.0 34.0 40.0 16.0 40.0 51 35.13863337921558 39.0 35.0 40.0 16.0 40.0 52 35.17282066584928 39.0 35.0 40.0 16.0 40.0 53 35.121426349496076 39.0 35.0 40.0 16.0 40.0 54 35.150349974156605 39.0 35.0 40.0 16.0 40.0 55 35.13686233505543 39.0 35.0 40.0 16.0 40.0 56 35.0924690848906 39.0 35.0 40.0 16.0 40.0 57 34.9867640668398 39.0 34.0 40.0 16.0 40.0 58 35.007464901664505 39.0 34.0 40.0 16.0 40.0 59 34.970221920737956 39.0 34.0 40.0 16.0 40.0 60 34.92993986760901 39.0 34.0 40.0 16.0 40.0 61 34.90597952000152 39.0 34.0 40.0 16.0 40.0 62 34.872532707920584 39.0 34.0 40.0 16.0 40.0 63 34.838247667564524 39.0 34.0 40.0 16.0 40.0 64 34.83107483977492 39.0 34.0 40.0 16.0 40.0 65 34.75955789988594 39.0 34.0 40.0 16.0 40.0 66 34.72403016038734 39.0 34.0 40.0 16.0 40.0 67 34.72068437103989 39.0 34.0 40.0 16.0 40.0 68 34.68986464077684 39.0 34.0 40.0 16.0 40.0 69 34.66606418184884 39.0 34.0 40.0 16.0 40.0 70 34.566159481834035 39.0 34.0 40.0 16.0 40.0 71 34.45293336362248 39.0 34.0 40.0 16.0 40.0 72 34.449300645332876 39.0 34.0 40.0 16.0 40.0 73 34.40701127690107 39.0 34.0 40.0 16.0 40.0 74 34.37449530188486 39.0 34.0 40.0 16.0 40.0 75 34.297204955915845 39.0 34.0 40.0 16.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 6071.0 3 1178.0 4 1413.0 5 1309.0 6 1372.0 7 1451.0 8 1526.0 9 1633.0 10 1823.0 11 1939.0 12 2180.0 13 2559.0 14 2792.0 15 3197.0 16 3623.0 17 4089.0 18 5113.0 19 9741.0 20 18142.0 21 25013.0 22 29620.0 23 33672.0 24 37514.0 25 40693.0 26 44544.0 27 48385.0 28 52716.0 29 57652.0 30 63524.0 31 70623.0 32 79198.0 33 89104.0 34 102489.0 35 122081.0 36 155375.0 37 221167.0 38 398511.0 39 783726.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.99556254410444 18.176550744793648 13.036827480247739 24.79105923085417 2 15.167578375135252 19.81329434793518 40.44760123446725 24.571526042462317 3 18.57095139304991 25.122904528253198 29.005626973378533 27.300517105318356 4 12.1439409709992 16.598542480126707 38.63939482926343 32.61812171961066 5 13.585313670719554 37.89405237858156 35.10264932375796 13.417984626940926 6 31.561194225960698 37.939842280107555 17.788644579338424 12.710318914593325 7 28.322736091070063 31.95786854142739 22.15613841927086 17.563256948231686 8 25.953692439085973 35.63416045383056 20.223385064972586 18.188762042110877 9 26.590199773781265 16.055949956426378 19.021647502451756 38.332202767340604 10 13.696008877779352 29.475755098034718 34.64324640507718 22.184989619108755 11 34.94845964670934 23.307178605944852 23.985874389237118 17.75848735810869 12 23.41514304100353 24.69654790842653 30.91946280569805 20.968846244871887 13 27.943594123378652 22.14248455926527 25.911266532054118 24.002654785301957 14 21.939695055877927 20.98194603519609 27.566945469253483 29.511413439672495 15 23.43576234843226 29.11794481307668 23.73484124716336 23.7114515913277 16 23.39349474702366 28.330493066609463 25.337962717442668 22.93804946892421 17 22.361500389036067 28.154971706827485 26.680315249818147 22.8032126543183 18 22.428265785643102 27.84936270113719 27.312983673149542 22.40938784007016 19 23.40192452146189 27.392373943211023 27.12911169174096 22.076589843586127 20 23.474784684564174 26.900795406604033 27.200270069393266 22.42414983943852 21 23.64967282185314 26.71399477116526 27.08332179021497 22.55301061676662 22 23.287073791791695 26.611096116050685 27.168885979583322 22.932944112574294 23 23.24255033525173 26.673310225989194 26.966531816659927 23.117607622099147 24 22.827631296705107 26.698045479622508 27.092582669175286 23.381740554497107 25 23.349841971411585 26.579632873429116 26.94144037537429 23.129084779785007 26 22.90215366885155 27.042835127067967 27.086290020650967 22.968721183429516 27 23.245004072412158 27.054233131942198 26.672439545061298 23.028323250584346 28 23.123206989739288 26.886379499807084 26.916366989834362 23.07404652061927 29 23.3379690496676 26.97694041138882 26.63927451698975 23.045816021953826 30 23.254462833401536 26.953946519611293 26.885162726307783 22.906427920679384 31 23.26890822152339 26.59914404149507 26.887339428627516 23.244608308354024 32 23.032478773194743 26.912747481159656 26.8849252678729 23.169848477772703 33 23.213404642712607 26.828688799184587 26.758915850339005 23.198990707763805 34 23.47047085633052 26.747832598135634 26.763979771707465 23.017716773826383 35 23.31502396154438 26.801429658649408 26.911095922560023 22.972450457246186 36 23.396542130271282 26.77498201252356 26.696224964955096 23.13225089225007 37 23.39173232397588 26.482849946730113 26.85126700005857 23.27415072923543 38 23.23061822988606 26.710570579365424 26.897729476437927 23.16108171431059 39 23.491846637715103 26.86717200640032 26.57113943648538 23.0698419193992 40 23.397044826269266 26.565377331795126 27.094554082212163 22.94302375972344 41 23.146830756955904 26.636941923958112 26.939664128348834 23.27656319073715 42 23.383538038612876 26.66743709834323 26.823924436483317 23.12510042656058 43 23.08442128959029 26.445094025699355 27.124621451378765 23.345863233331592 44 23.271141182369846 26.790262072972315 26.788837311649523 23.149759433008317 45 23.31158055460681 26.826443854045174 26.63489169981561 23.227083891532406 46 23.307569011576135 26.762046106658747 26.520589690313646 23.40979519145147 47 23.251580190070023 26.893052071175934 26.596268016699693 23.25909972205435 48 23.04859549216644 27.01260944364654 26.800915165170213 23.137879899016802 49 23.35656996039985 26.550306756721458 26.67449751816359 23.418625764715102 50 23.502406645047362 26.64446162942653 26.730144683653418 23.122987041872694 51 23.27821074811258 26.889357478355443 26.435925931202835 23.396505842329145 52 23.310320917921505 26.821983320879927 26.464726257266246 23.402969503932322 53 23.128314785770005 26.942151311548013 26.67908579687638 23.250448105805607 54 23.12717454585608 26.852106541516786 26.85064216755842 23.17007674506872 55 23.169627892047888 26.61544860852815 26.707544545027474 23.507378954396483 56 23.09311904965442 27.038750265163387 26.718021295390432 23.150109389791766 57 23.246371718260672 26.662621940384216 26.724123942761185 23.366882398593923 58 23.127209865051306 26.628047704194103 26.82498145830711 23.419760972447477 59 23.231774356068012 26.86111205655346 26.609048331804352 23.298065255574173 60 23.1945414644089 26.90556994639221 26.858591395445018 23.04129719375387 61 23.38927481351081 26.620223787028714 26.846844564900774 23.14365683455971 62 23.24070922547196 26.879922428464003 26.743182807614673 23.13618553844936 63 22.93171827699356 26.770089162919717 26.983923445506292 23.314269114580426 64 23.14934022821008 26.717304380761203 26.658532231873345 23.474823159155374 65 23.298224283937262 26.766583593851106 26.669025475531516 23.266166646680116 66 23.217234955449424 26.906306657869877 26.526954947581388 23.34950343909931 67 23.25618763829847 26.728911449797383 26.588767680733415 23.426133231170727 68 23.289916332233066 26.824582650613856 26.870374328164452 23.015126688988623 69 23.30623703083944 26.821737886314263 26.53737116921225 23.33465391363405 70 23.200171926711093 26.6041941568665 26.785540425336553 23.410093491085853 71 23.306329592862117 26.70734443957641 26.6496008409431 23.336725126618376 72 23.039346444857276 26.884112059282856 26.675859033835774 23.4006824620241 73 23.288937682373675 26.704393669493882 26.615386015785504 23.39128263234694 74 23.169031810712486 26.719122522060427 26.693357649673725 23.418488017553358 75 23.264487766343535 26.78284636433508 26.706343960821904 23.246321908499485 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 162.0 1 192.5 2 262.5 3 304.5 4 307.0 5 279.0 6 267.0 7 292.5 8 302.0 9 413.5 10 623.5 11 732.0 12 742.0 13 763.0 14 861.5 15 1067.5 16 1196.0 17 1326.0 18 1696.5 19 2324.0 20 2711.0 21 3335.0 22 5259.5 23 7921.0 24 9282.0 25 11462.5 26 16623.5 27 22335.0 28 25066.0 29 29151.5 30 37570.5 31 46131.0 32 50358.0 33 54889.5 34 64544.5 35 74465.0 36 79262.0 37 83217.5 38 89317.5 39 95087.5 40 98713.0 41 103096.0 42 109669.0 43 113999.0 44 116139.0 45 119108.5 46 123978.0 47 127867.5 48 129857.0 49 130724.0 50 130238.0 51 126870.0 52 124855.0 53 121127.5 54 115159.5 55 107532.5 56 102146.0 57 97536.5 58 85407.0 59 69580.5 60 61274.0 61 55332.5 62 42781.0 63 31044.0 64 25917.0 65 21433.5 66 14147.0 67 9678.0 68 8012.0 69 6521.5 70 4090.5 71 2540.5 72 1931.0 73 1695.5 74 1205.5 75 736.5 76 522.0 77 395.0 78 207.5 79 120.0 80 93.0 81 69.5 82 29.0 83 13.5 84 15.0 85 11.5 86 6.0 87 3.0 88 2.0 89 1.0 90 0.5 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0033639944941304236 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.09387523458914546 29 0.0 30 0.0 31 0.0 32 0.0 33 0.05635680187813791 34 0.0 35 3.95764058132991E-5 36 0.0 37 7.91528116265982E-5 38 0.0011081393627723746 39 3.561876523196919E-4 40 1.1872921743989729E-4 41 7.519517104526828E-4 42 0.0014247506092787676 43 7.91528116265982E-5 44 7.519517104526828E-4 45 0.001226868580212272 46 3.166112465063928E-4 47 1.978820290664955E-4 48 3.95764058132991E-5 49 0.0 50 1.583056232531964E-4 51 0.0010289865511457765 52 2.3745843487979457E-4 53 4.353404639462901E-4 54 0.003205688870877227 55 0.0017809382615984592 56 5.540696813861873E-4 57 4.353404639462901E-4 58 7.91528116265982E-4 59 6.332224930127856E-4 60 0.0028890776243708344 61 0.002770348406930937 62 0.0022954315371713475 63 0.0013851742034654685 64 0.002018396696478254 65 0.0023350079429846466 66 0.0031265360592506288 67 0.0026516191894910396 68 0.0038784877697033114 69 0.0036014529290102175 70 0.00395764058132991 71 0.002809924812744236 72 9.498337395191783E-4 73 3.561876523196919E-4 74 0.002453737160424544 75 0.001583056232531964 >>END_MODULE >>Sequence Length Distribution pass #Length Count 75 2526758.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.15211833904524 #Duplication Level Percentage of deduplicated Percentage of total 1 78.05130936557748 48.51054216206801 2 12.003112308951195 14.920377133255705 3 4.384726171559683 8.175600596972584 4 1.9748611062247652 4.909672047090376 5 1.0825445886631722 3.364121969094326 6 0.6295123328208837 2.34753150032232 7 0.4211170144455276 1.8321320161482697 8 0.28159381947465495 1.4001321913225997 9 0.20275586964960818 1.1341536123958629 >10 0.9079641903167923 9.604788643843463 >50 0.04389779671240519 1.8385979139813182 >100 0.01615432944563003 1.8096275616632402 >500 4.5110615820275255E-4 0.1527226518419299 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.95764058132991E-5 2 0.0 0.0 0.0 0.0 3.95764058132991E-5 3 0.0 0.0 0.0 0.0 3.95764058132991E-5 4 0.0 0.0 0.0 0.0 3.95764058132991E-5 5 0.0 0.0 0.0 0.0 3.95764058132991E-5 6 0.0 0.0 0.0 0.0 3.95764058132991E-5 7 0.0 0.0 0.0 0.0 3.95764058132991E-5 8 0.0 0.0 0.0 0.0 3.95764058132991E-5 9 0.0 0.0 0.0 0.0 3.95764058132991E-5 10 0.0 0.0 0.0 0.0 3.95764058132991E-5 11 0.0 0.0 0.0 3.95764058132991E-5 3.95764058132991E-5 12 0.0 0.0 0.0 3.95764058132991E-5 1.583056232531964E-4 13 0.0 0.0 0.0 3.95764058132991E-5 1.583056232531964E-4 14 0.0 0.0 0.0 3.95764058132991E-5 1.583056232531964E-4 15 0.0 0.0 0.0 3.95764058132991E-5 1.978820290664955E-4 16 0.0 0.0 0.0 3.95764058132991E-5 2.3745843487979457E-4 17 0.0 0.0 0.0 3.95764058132991E-5 2.3745843487979457E-4 18 0.0 0.0 0.0 3.95764058132991E-5 4.3534046394629007E-4 19 0.0 0.0 0.0 3.95764058132991E-5 4.3534046394629007E-4 20 0.0 0.0 0.0 7.91528116265982E-5 4.3534046394629007E-4 21 0.0 0.0 0.0 7.91528116265982E-5 4.7491686975958914E-4 22 0.0 0.0 0.0 7.91528116265982E-5 4.7491686975958914E-4 23 0.0 0.0 0.0 7.91528116265982E-5 4.7491686975958914E-4 24 0.0 0.0 0.0 1.583056232531964E-4 4.7491686975958914E-4 25 0.0 0.0 0.0 1.583056232531964E-4 4.7491686975958914E-4 26 0.0 0.0 0.0 2.3745843487979457E-4 5.144932755728883E-4 27 0.0 0.0 0.0 3.166112465063928E-4 5.144932755728883E-4 28 0.0 0.0 0.0 7.91528116265982E-4 5.540696813861874E-4 29 0.0 0.0 0.0 0.0014643270150920666 5.540696813861874E-4 30 0.0 0.0 0.0 0.002889077624370834 5.540696813861874E-4 31 0.0 0.0 0.0 0.007559093510340127 5.540696813861874E-4 32 0.0 0.0 0.0 0.011991650961429626 5.540696813861874E-4 33 0.0 0.0 0.0 0.016345055600892527 5.540696813861874E-4 34 0.0 0.0 0.0 0.02152956476243471 5.540696813861874E-4 35 0.0 3.95764058132991E-5 0.0 0.02802009531581576 5.540696813861874E-4 36 0.0 3.95764058132991E-5 0.0 0.034471049463383516 5.540696813861874E-4 37 0.0 3.95764058132991E-5 0.0 0.045196255438787566 5.540696813861874E-4 38 0.0 3.95764058132991E-5 0.0 0.05928545590832205 5.936460871994864E-4 39 0.0 3.95764058132991E-5 0.0 0.07729272055337313 5.936460871994864E-4 40 0.0 3.95764058132991E-5 0.0 0.09537913801005082 5.936460871994864E-4 41 0.0 3.95764058132991E-5 0.0 0.11362386108998171 5.936460871994864E-4 42 0.0 3.95764058132991E-5 0.0 0.13396613367801743 5.936460871994864E-4 43 0.0 3.95764058132991E-5 0.0 0.1534773017439739 6.332224930127856E-4 44 0.0 3.95764058132991E-5 0.0 0.17445279682502243 6.332224930127856E-4 45 0.0 3.95764058132991E-5 0.0 0.19475549300724485 6.332224930127856E-4 46 0.0 3.95764058132991E-5 0.0 0.21711616229175884 6.332224930127856E-4 47 0.0 3.95764058132991E-5 0.0 0.24280124966458996 6.332224930127856E-4 48 0.0 3.95764058132991E-5 0.0 0.26959447640019346 6.332224930127856E-4 49 0.0 3.95764058132991E-5 0.0 0.29615024470091716 6.332224930127856E-4 50 0.0 3.95764058132991E-5 0.0 0.32559509062601166 6.332224930127856E-4 51 0.0 3.95764058132991E-5 0.0 0.354881630927853 6.332224930127856E-4 52 0.0 3.95764058132991E-5 0.0 0.3821893509390294 6.727988988260847E-4 53 0.0 3.95764058132991E-5 0.0 0.4130193710675894 6.727988988260847E-4 54 0.0 3.95764058132991E-5 0.0 0.44507625977636167 7.123753046393837E-4 55 0.0 3.95764058132991E-5 0.0 0.47938900361649195 7.123753046393837E-4 56 0.0 3.95764058132991E-5 0.0 0.5148098868193947 7.123753046393837E-4 57 0.0 3.95764058132991E-5 0.0 0.5501516172106707 7.123753046393837E-4 58 0.0 3.95764058132991E-5 0.0 0.5906382803576757 7.123753046393837E-4 59 0.0 3.95764058132991E-5 0.0 0.6307291794465477 7.123753046393837E-4 60 0.0 3.95764058132991E-5 0.0 0.6736695797539772 7.123753046393837E-4 61 0.0 3.95764058132991E-5 0.0 0.717836848641619 7.123753046393837E-4 62 0.0 3.95764058132991E-5 0.0 0.7629935276745933 7.123753046393837E-4 63 0.0 3.95764058132991E-5 0.0 0.8108414023028719 7.123753046393837E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2820 0.0 36.08638 1 TCAACGC 3495 0.0 27.535505 4 ATCAACG 3520 0.0 27.24195 3 CAACGCA 3540 0.0 27.088037 5 TGACGCG 65 8.6696586E-4 26.533384 10 GGTATCA 1455 0.0 26.316635 1 AACGCAG 3830 0.0 25.397228 6 TATCAAC 3875 0.0 25.280325 2 ACGCAGA 4325 0.0 21.772713 7 GTACATG 6230 0.0 20.376528 1 CGCAGAG 4550 0.0 20.089563 8 TCGCAAT 340 0.0 19.276867 49 TACATGG 6305 0.0 18.928972 2 ACATGGG 6360 0.0 18.168694 3 AGAGTAC 4705 0.0 18.034807 11 CGTGCCG 285 3.2923708E-10 16.944126 10 GCACCGT 480 0.0 16.528088 6 CAGAGTA 5240 0.0 16.522602 10 GCAGAGT 5475 0.0 16.128422 9 GTATAGG 565 0.0 15.874326 1 >>END_MODULE