Basic Statistics
Measure | Value |
---|---|
Filename | SRR2079213_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3761854 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 6830 | 0.0 | 39.449368 | 1 |
GGTATCA | 2785 | 0.0 | 35.27089 | 1 |
ATCAACG | 9455 | 0.0 | 28.729925 | 3 |
TCAACGC | 9420 | 0.0 | 28.616825 | 4 |
TATCAAC | 9355 | 0.0 | 28.483597 | 2 |
CAACGCA | 9770 | 0.0 | 27.379683 | 5 |
AACGCAG | 10260 | 0.0 | 26.212221 | 6 |
ACGCAGA | 12195 | 0.0 | 21.450598 | 7 |
CGCAGAG | 12420 | 0.0 | 20.863333 | 8 |
GAGTACT | 8760 | 0.0 | 19.614582 | 12 |
AGAGTAC | 12185 | 0.0 | 19.509562 | 11 |
CAGAGTA | 12875 | 0.0 | 18.651588 | 10 |
GCAGAGT | 13525 | 0.0 | 18.086843 | 9 |
AGTACTT | 9520 | 0.0 | 18.0084 | 13 |
GTACATG | 8020 | 0.0 | 17.897692 | 1 |
GTACTTT | 9510 | 0.0 | 17.887953 | 14 |
TACATGG | 7950 | 0.0 | 17.062658 | 2 |
ACATGGG | 8530 | 0.0 | 16.307121 | 3 |
TACTTTT | 11000 | 0.0 | 15.65358 | 15 |
TCGTATG | 580 | 0.0 | 15.462849 | 40 |