FastQCFastQC Report
Mon 6 Feb 2017
SRR2079202_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2079202_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3648606
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA55900.041.766111
GGTATCA22550.038.4998661
ATCAACG81850.028.842153
TCAACGC82400.028.6496334
TATCAAC82100.028.249862
CAACGCA85050.027.5540645
AACGCAG88850.026.3425466
ACGCAGA105550.021.743227
CGCAGAG108250.020.9429748
GAGTACT72100.020.6740512
TACCGTA2402.7284841E-1120.1315527
AGAGTAC105350.020.07719411
AGTACTT76450.019.35805113
GTACTTT77400.019.21512214
CAGAGTA113400.018.8953810
GTACATG74950.018.1364781
GCAGAGT120850.017.9018529
GTACCGT2802.5283953E-1017.2605846
ACCGTAA1804.1937055E-617.2532488
TACATGG75400.016.9821552
Produced by FastQC (version 0.11.5)