Basic Statistics
Measure | Value |
---|---|
Filename | SRR2079162_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3156504 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 3690 | 0.0 | 35.343094 | 1 |
GGTATCA | 1805 | 0.0 | 28.939388 | 1 |
TCAACGC | 4525 | 0.0 | 28.054262 | 4 |
CAACGCA | 4645 | 0.0 | 27.329935 | 5 |
ATCAACG | 4740 | 0.0 | 27.291195 | 3 |
TATCAAC | 4830 | 0.0 | 26.594955 | 2 |
AACGCAG | 5075 | 0.0 | 25.28619 | 6 |
ACGCAGA | 5950 | 0.0 | 21.045834 | 7 |
CGCAGAG | 6185 | 0.0 | 19.968271 | 8 |
AGAGTAC | 6015 | 0.0 | 18.07043 | 11 |
GTACATG | 6900 | 0.0 | 17.597364 | 1 |
TACATGG | 6920 | 0.0 | 17.315172 | 2 |
TACCGTA | 180 | 4.2048014E-6 | 17.248308 | 7 |
CAGAGTA | 6640 | 0.0 | 16.681322 | 10 |
GAGTACT | 3160 | 0.0 | 16.596727 | 12 |
ACATGGG | 7100 | 0.0 | 16.373487 | 3 |
GCAGAGT | 7010 | 0.0 | 16.29335 | 9 |
ACCGTAT | 245 | 2.923989E-7 | 15.489013 | 8 |
GTGTAGC | 1415 | 0.0 | 14.668457 | 1 |
AGTACTT | 3685 | 0.0 | 14.513099 | 13 |