SRR2079144_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2079144_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18095794
Sequences flagged as poor quality	0
Sequence length	75
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	80769	0.44634128792580197	TruSeq Adapter, Index 2 (97% over 37bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA	23680	0.13085913776427827	TruSeq Adapter, Index 2 (97% over 36bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	14370	47.83069	48
TCGTATG	15015	45.91231	45
TATCTCG	14960	45.571068	41
CGTATGC	15230	45.151455	46
CTCGTAT	16135	42.53204	44
ATGCCGT	16245	42.246613	49
TGCCGTC	17050	40.494698	50
GTATGCC	17160	40.416443	47
TCTCGTA	16945	40.29375	43
ACCGCTC	17195	40.092937	32
GCCGTCT	17205	39.86776	51
TCACCGC	17680	39.168877	30
ATCTCGT	17845	38.300213	42
CGCTCAT	18065	38.181175	34
CACCGCT	18325	37.73376	31
CCGTCTT	18515	37.158733	52
GTCACCG	18770	36.87622	29
CCGCTCA	19100	36.148308	33
TTATCTC	19350	35.498734	40
CATTATC	20100	34.173397	38