Basic Statistics
Measure | Value |
---|---|
Filename | SRR2077458_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2994239 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3977 | 0.13282172865960268 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2390 | 0.0 | 26.32787 | 1 |
GTATCAA | 5930 | 0.0 | 25.82273 | 1 |
TATCAAC | 8075 | 0.0 | 18.689295 | 2 |
ATCAACG | 8250 | 0.0 | 18.18619 | 3 |
TCAACGC | 8285 | 0.0 | 18.136826 | 4 |
CAACGCA | 8340 | 0.0 | 18.016315 | 5 |
AACGCAG | 8645 | 0.0 | 17.25172 | 6 |
TGCGATA | 185 | 4.2200554E-10 | 16.650438 | 13 |
GGACCGT | 225 | 2.5465852E-11 | 15.642465 | 6 |
GACCGTA | 85 | 0.0029828323 | 15.528227 | 7 |
GTACATG | 10310 | 0.0 | 15.300586 | 1 |
ACGCAGA | 9810 | 0.0 | 15.069187 | 7 |
TACATGG | 10480 | 0.0 | 14.925181 | 2 |
GTATAGG | 525 | 0.0 | 14.667509 | 1 |
AGAGTAC | 9610 | 0.0 | 14.423787 | 11 |
CGCAGAG | 10230 | 0.0 | 14.407502 | 8 |
GAGTACT | 4825 | 0.0 | 14.136234 | 12 |
TACCGAC | 110 | 0.0010192035 | 13.998932 | 7 |
CGATACT | 205 | 2.9282091E-8 | 13.952487 | 15 |
GTATCGA | 95 | 0.0062396117 | 13.895765 | 9 |