Basic Statistics
Measure | Value |
---|---|
Filename | SRR2077429_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3425733 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3602 | 0.1051453805652688 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 6055 | 0.0 | 22.672165 | 1 |
GGTATCA | 2940 | 0.0 | 19.829926 | 1 |
ATCAACG | 7465 | 0.0 | 17.770666 | 3 |
TCAACGC | 7500 | 0.0 | 17.688251 | 4 |
TATCAAC | 7705 | 0.0 | 17.502659 | 2 |
CAACGCA | 7650 | 0.0 | 17.28315 | 5 |
AACGCAG | 7770 | 0.0 | 17.015732 | 6 |
TATACCG | 190 | 6.184564E-10 | 16.210047 | 5 |
CGCGACA | 100 | 4.945899E-4 | 15.400445 | 28 |
ACGCAGA | 8715 | 0.0 | 15.019856 | 7 |
GTACATG | 7585 | 0.0 | 14.473298 | 1 |
AGAGTAC | 8180 | 0.0 | 14.416064 | 11 |
GAGTACT | 5005 | 0.0 | 14.374251 | 12 |
CGCAGAG | 9030 | 0.0 | 14.325368 | 8 |
TACATGG | 7505 | 0.0 | 13.835902 | 2 |
ATACCGT | 210 | 4.0259692E-8 | 13.618247 | 6 |
CAGAGTA | 9145 | 0.0 | 13.400059 | 10 |
GTACTTT | 5400 | 0.0 | 13.200575 | 14 |
ACATGGG | 7615 | 0.0 | 13.173802 | 3 |
CTATACT | 720 | 0.0 | 13.139076 | 4 |